Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 RNU7-74P-201ENST00000459104 62 ntBASIC0.25□□□□□ -2.37
HOXA1P49639 AC108740.1-201ENST00000498629 225 ntBASIC0.25□□□□□ -2.37
HOXA1P49639 FGF7P7-201ENST00000514120 227 ntBASIC0.25□□□□□ -2.37
HOXA1P49639 RNA5SP134-201ENST00000516492 96 ntBASIC0.25□□□□□ -2.37
HOXA1P49639 MIR4460-201ENST00000577862 86 ntBASIC0.25□□□□□ -2.37
HOXA1P49639 MIR3140-201ENST00000583685 90 ntBASIC0.25□□□□□ -2.37
HOXA1P49639 AC104996.3-201ENST00000590718 94 ntBASIC0.25□□□□□ -2.37
HOXA1P49639 DLEU2_3.1-201ENST00000620005 73 ntBASIC0.25□□□□□ -2.37
HOXA1P49639 MIR2052-201ENST00000636055 55 ntBASIC0.25□□□□□ -2.37
HOXA1P49639 AC073869.9-201ENST00000641610 120 ntBASIC0.25□□□□□ -2.37
HOXA1P49639 RNA5SP128-201ENST00000365305 116 ntBASIC0.24□□□□□ -2.37
HOXA1P49639 Y_RNA.491-201ENST00000384417 107 ntBASIC0.24□□□□□ -2.37
HOXA1P49639 MIR643-201ENST00000385267 97 ntBASIC0.24□□□□□ -2.37
HOXA1P49639 RNU6-127P-201ENST00000390897 107 ntBASIC0.24□□□□□ -2.37
HOXA1P49639 AC069113.3-201ENST00000521019 150 ntBASIC0.24□□□□□ -2.37
HOXA1P49639 YWHAEP2-201ENST00000580066 112 ntBASIC0.24□□□□□ -2.37
HOXA1P49639 MIR5093-201ENST00000583199 100 ntBASIC0.24□□□□□ -2.37
HOXA1P49639 RN7SL793P-201ENST00000583259 296 ntBASIC0.24□□□□□ -2.37
HOXA1P49639 PVT1_3.1-201ENST00000620853 95 ntBASIC0.24□□□□□ -2.37
HOXA1P49639 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.24□□□□□ -2.37
HOXA1P49639 RNU6-1327P-201ENST00000365302 105 ntBASIC0.23□□□□□ -2.37
HOXA1P49639 RNU6-49P-201ENST00000384256 107 ntBASIC0.23□□□□□ -2.37
HOXA1P49639 RNU7-153P-201ENST00000516455 62 ntBASIC0.23□□□□□ -2.37
HOXA1P49639 SNORA18.5-201ENST00000516616 101 ntBASIC0.23□□□□□ -2.37
HOXA1P49639 RNU6-1057P-201ENST00000517162 102 ntBASIC0.23□□□□□ -2.37
HOXA1P49639 SNORA9.1-201ENST00000362412 131 ntBASIC0.22□□□□□ -2.37
HOXA1P49639 RNY4P30-201ENST00000410216 95 ntBASIC0.22□□□□□ -2.37
HOXA1P49639 MIR548AE1-201ENST00000583292 70 ntBASIC0.22□□□□□ -2.37
HOXA1P49639 MIR548U-201ENST00000390728 81 ntBASIC0.21□□□□□ -2.38
HOXA1P49639 RNU4ATAC4P-201ENST00000516307 126 ntBASIC0.21□□□□□ -2.38
HOXA1P49639 RNU6-267P-201ENST00000516714 103 ntBASIC0.21□□□□□ -2.38
HOXA1P49639 MIR5706-201ENST00000579841 80 ntBASIC0.21□□□□□ -2.38
HOXA1P49639 RNU6V-201ENST00000384105 107 ntBASIC0.2□□□□□ -2.38
HOXA1P49639 MIR193B-201ENST00000384907 83 ntBASIC0.2□□□□□ -2.38
HOXA1P49639 MT-TY-201ENST00000387409 66 ntBASIC0.2□□□□□ -2.38
HOXA1P49639 RNU6-402P-201ENST00000410678 103 ntBASIC0.2□□□□□ -2.38
HOXA1P49639 RNU6-762P-201ENST00000517107 102 ntBASIC0.2□□□□□ -2.38
HOXA1P49639 MIR4668-201ENST00000582284 70 ntBASIC0.2□□□□□ -2.38
HOXA1P49639 AC069503.3-201ENST00000618674 145 ntBASIC0.2□□□□□ -2.38
HOXA1P49639 AC010487.4-201ENST00000637027 61 ntBASIC0.2□□□□□ -2.38
HOXA1P49639 Y_RNA.125-201ENST00000363371 111 ntBASIC0.19□□□□□ -2.38
HOXA1P49639 RNU6-54P-201ENST00000365563 107 ntBASIC0.19□□□□□ -2.38
HOXA1P49639 RNA5SP480-201ENST00000516840 109 ntBASIC0.19□□□□□ -2.38
HOXA1P49639 MIR4677-201ENST00000584153 80 ntBASIC0.19□□□□□ -2.38
HOXA1P49639 Y_RNA.220-201ENST00000364244 109 ntBASIC0.18□□□□□ -2.38
HOXA1P49639 RNU6-1051P-201ENST00000365471 102 ntBASIC0.18□□□□□ -2.38
HOXA1P49639 RNA5SP193-201ENST00000410353 107 ntBASIC0.18□□□□□ -2.38
HOXA1P49639 MIR548AD-201ENST00000584780 82 ntBASIC0.18□□□□□ -2.38
HOXA1P49639 MIR548O2-201ENST00000616090 70 ntBASIC0.18□□□□□ -2.38
HOXA1P49639 MIR3925-201ENST00000584674 77 ntBASIC0.17□□□□□ -2.38
HOXA1P49639 RNA5SP325-201ENST00000363756 130 ntBASIC0.16□□□□□ -2.38
HOXA1P49639 RNU6-219P-201ENST00000364728 107 ntBASIC0.16□□□□□ -2.38
HOXA1P49639 Y_RNA.558-201ENST00000384685 113 ntBASIC0.16□□□□□ -2.38
HOXA1P49639 MIR516B1-201ENST00000385211 90 ntBASIC0.16□□□□□ -2.38
HOXA1P49639 MIR548H2-201ENST00000408874 88 ntBASIC0.16□□□□□ -2.38
HOXA1P49639 Y_RNA.620-201ENST00000411009 88 ntBASIC0.16□□□□□ -2.38
HOXA1P49639 RNU6-848P-201ENST00000515948 107 ntBASIC0.16□□□□□ -2.38
HOXA1P49639 RNU6-617P-201ENST00000516147 107 ntBASIC0.16□□□□□ -2.38
HOXA1P49639 RNU6-473P-201ENST00000516164 107 ntBASIC0.16□□□□□ -2.38
HOXA1P49639 SNORA25.13-201ENST00000516395 103 ntBASIC0.16□□□□□ -2.38
HOXA1P49639 RNU6-1049P-201ENST00000516414 107 ntBASIC0.16□□□□□ -2.38
HOXA1P49639 SNORA62.5-201ENST00000516634 120 ntBASIC0.16□□□□□ -2.38
HOXA1P49639 MIR1273G-201ENST00000577677 100 ntBASIC0.16□□□□□ -2.38
HOXA1P49639 MIR4796-201ENST00000580742 81 ntBASIC0.16□□□□□ -2.38
HOXA1P49639 AC104408.1-201ENST00000605241 170 ntBASIC0.16□□□□□ -2.38
HOXA1P49639 SNORD114-26-201ENST00000363543 72 ntBASIC0.15□□□□□ -2.39
HOXA1P49639 RNU6-844P-201ENST00000517175 102 ntBASIC0.15□□□□□ -2.39
HOXA1P49639 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.15□□□□□ -2.39
HOXA1P49639 MIR4315-1-201ENST00000636800 73 ntBASIC0.15□□□□□ -2.39
HOXA1P49639 MIR4315-2-201ENST00000640925 73 ntBASIC0.15□□□□□ -2.39
HOXA1P49639 SNORA63.2-201ENST00000362603 126 ntBASIC0.14□□□□□ -2.39
HOXA1P49639 SNORD114-5-201ENST00000362928 70 ntBASIC0.14□□□□□ -2.39
HOXA1P49639 RNU6-1134P-201ENST00000365156 101 ntBASIC0.14□□□□□ -2.39
HOXA1P49639 SNORD116-22-201ENST00000384430 92 ntBASIC0.14□□□□□ -2.39
HOXA1P49639 MIR593-201ENST00000384856 100 ntBASIC0.14□□□□□ -2.39
HOXA1P49639 MIR1236-201ENST00000408340 102 ntBASIC0.14□□□□□ -2.39
HOXA1P49639 MIR1295A-201ENST00000408463 79 ntBASIC0.14□□□□□ -2.39
HOXA1P49639 snoU13.17-201ENST00000458802 104 ntBASIC0.14□□□□□ -2.39
HOXA1P49639 U7.6-201ENST00000610841 64 ntBASIC0.14□□□□□ -2.39
HOXA1P49639 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.14□□□□□ -2.39
HOXA1P49639 RNA5SP214-201ENST00000363378 118 ntBASIC0.13□□□□□ -2.39
HOXA1P49639 Y_RNA.258-201ENST00000364613 105 ntBASIC0.13□□□□□ -2.39
HOXA1P49639 Y_RNA.437-201ENST00000384113 113 ntBASIC0.13□□□□□ -2.39
HOXA1P49639 SNORA24B-201ENST00000384176 131 ntBASIC0.13□□□□□ -2.39
HOXA1P49639 MIR106A-201ENST00000384870 81 ntBASIC0.13□□□□□ -2.39
HOXA1P49639 MIR519C-201ENST00000385053 87 ntBASIC0.13□□□□□ -2.39
HOXA1P49639 SNORD42B-201ENST00000458893 67 ntBASIC0.13□□□□□ -2.39
HOXA1P49639 SCARNA11.2-201ENST00000517183 154 ntBASIC0.13□□□□□ -2.39
HOXA1P49639 MIR4514-201ENST00000581410 57 ntBASIC0.13□□□□□ -2.39
HOXA1P49639 AC084368.1-201ENST00000620935 65 ntBASIC0.13□□□□□ -2.39
HOXA1P49639 MIR924-201ENST00000638017 53 ntBASIC0.13□□□□□ -2.39
HOXA1P49639 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.12□□□□□ -2.39
HOXA1P49639 Y_RNA.17-201ENST00000362433 111 ntBASIC0.12□□□□□ -2.39
HOXA1P49639 RNU6-633P-201ENST00000362612 103 ntBASIC0.12□□□□□ -2.39
HOXA1P49639 Y_RNA.205-201ENST00000364128 113 ntBASIC0.12□□□□□ -2.39
HOXA1P49639 Y_RNA.407-201ENST00000383986 113 ntBASIC0.12□□□□□ -2.39
HOXA1P49639 RNU6-154P-201ENST00000384306 106 ntBASIC0.12□□□□□ -2.39
HOXA1P49639 MIR652-201ENST00000385278 98 ntBASIC0.12□□□□□ -2.39
HOXA1P49639 Y_RNA.593-201ENST00000410292 98 ntBASIC0.12□□□□□ -2.39
HOXA1P49639 RNU7-188P-201ENST00000517063 64 ntBASIC0.12□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 265.4 ms