Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 RNA5SP347-201ENST00000362445 119 ntBASIC0.62□□□□□ -2.31
CBX4O00257 RNU6-294P-201ENST00000364999 102 ntBASIC0.62□□□□□ -2.31
CBX4O00257 MIR519E-201ENST00000385075 84 ntBASIC0.62□□□□□ -2.31
CBX4O00257 RNU2-59P-201ENST00000410482 191 ntBASIC0.62□□□□□ -2.31
CBX4O00257 RNU6-402P-201ENST00000410678 103 ntBASIC0.62□□□□□ -2.31
CBX4O00257 HAR1A.1-201ENST00000459583 118 ntBASIC0.62□□□□□ -2.31
CBX4O00257 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.62□□□□□ -2.31
CBX4O00257 AC243829.3-201ENST00000622177 108 ntBASIC0.62□□□□□ -2.31
CBX4O00257 MIR519C-201ENST00000385053 87 ntBASIC0.61□□□□□ -2.31
CBX4O00257 Y_RNA.620-201ENST00000411009 88 ntBASIC0.61□□□□□ -2.31
CBX4O00257 AC069271.1-201ENST00000445577 156 ntBASIC0.61□□□□□ -2.31
CBX4O00257 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.61□□□□□ -2.31
CBX4O00257 RNU6-633P-201ENST00000362612 103 ntBASIC0.6□□□□□ -2.31
CBX4O00257 RNU6-35P-201ENST00000384530 107 ntBASIC0.6□□□□□ -2.31
CBX4O00257 MIR451A-201ENST00000385059 72 ntBASIC0.6□□□□□ -2.31
CBX4O00257 MIR1197-201ENST00000408818 88 ntBASIC0.6□□□□□ -2.31
CBX4O00257 RNU6-863P-201ENST00000515989 104 ntBASIC0.6□□□□□ -2.31
CBX4O00257 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.6□□□□□ -2.31
CBX4O00257 DLEU2_3.1-201ENST00000620005 73 ntBASIC0.6□□□□□ -2.31
CBX4O00257 Y_RNA.17-201ENST00000362433 111 ntBASIC0.59□□□□□ -2.31
CBX4O00257 SNORD115-37-201ENST00000363768 82 ntBASIC0.59□□□□□ -2.31
CBX4O00257 Y_RNA.558-201ENST00000384685 113 ntBASIC0.59□□□□□ -2.31
CBX4O00257 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.58□□□□□ -2.32
CBX4O00257 Y_RNA.43-201ENST00000362670 111 ntBASIC0.58□□□□□ -2.32
CBX4O00257 RNA5SP292-201ENST00000390974 118 ntBASIC0.58□□□□□ -2.32
CBX4O00257 SNORA18.5-201ENST00000516616 101 ntBASIC0.58□□□□□ -2.32
CBX4O00257 RNU6-1255P-201ENST00000363434 112 ntBASIC0.57□□□□□ -2.32
CBX4O00257 RNU6-219P-201ENST00000364728 107 ntBASIC0.57□□□□□ -2.32
CBX4O00257 RNY4P3-201ENST00000365254 95 ntBASIC0.57□□□□□ -2.32
CBX4O00257 MIR92A1-201ENST00000385233 78 ntBASIC0.57□□□□□ -2.32
CBX4O00257 IGLL4P-201ENST00000614590 133 ntBASIC0.57□□□□□ -2.32
CBX4O00257 MIR5087-201ENST00000635826 76 ntBASIC0.57□□□□□ -2.32
CBX4O00257 RNU1-141P-201ENST00000364623 158 ntBASIC0.56□□□□□ -2.32
CBX4O00257 U3.27-201ENST00000391237 200 ntBASIC0.56□□□□□ -2.32
CBX4O00257 RNA5SP484-201ENST00000458857 111 ntBASIC0.56□□□□□ -2.32
CBX4O00257 SNORA68.3-201ENST00000515906 83 ntBASIC0.56□□□□□ -2.32
CBX4O00257 MIR4460-201ENST00000577862 86 ntBASIC0.56□□□□□ -2.32
CBX4O00257 MIR4752-201ENST00000579672 72 ntBASIC0.56□□□□□ -2.32
CBX4O00257 MIR4796-201ENST00000580742 81 ntBASIC0.56□□□□□ -2.32
CBX4O00257 AC006254.2-201ENST00000603259 279 ntBASIC0.56□□□□□ -2.32
CBX4O00257 SNORD115-27-201ENST00000364430 82 ntBASIC0.55□□□□□ -2.32
CBX4O00257 RNU6-675P-201ENST00000384236 104 ntBASIC0.55□□□□□ -2.32
CBX4O00257 AC006210.1-201ENST00000424882 111 ntBASIC0.55□□□□□ -2.32
CBX4O00257 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.55□□□□□ -2.32
CBX4O00257 FGF7P7-201ENST00000514120 227 ntBASIC0.55□□□□□ -2.32
CBX4O00257 NAMPTP3-201ENST00000569273 224 ntBASIC0.55□□□□□ -2.32
CBX4O00257 RNY1P1-201ENST00000364372 112 ntBASIC0.54□□□□□ -2.32
CBX4O00257 SNORA2A-201ENST00000383885 135 ntBASIC0.54□□□□□ -2.32
CBX4O00257 Y_RNA.423-201ENST00000384057 113 ntBASIC0.54□□□□□ -2.32
CBX4O00257 Y_RNA.593-201ENST00000410292 98 ntBASIC0.54□□□□□ -2.32
CBX4O00257 RNU6-848P-201ENST00000515948 107 ntBASIC0.54□□□□□ -2.32
CBX4O00257 RNU6-617P-201ENST00000516147 107 ntBASIC0.54□□□□□ -2.32
CBX4O00257 RNU6-473P-201ENST00000516164 107 ntBASIC0.54□□□□□ -2.32
CBX4O00257 RNU6-1049P-201ENST00000516414 107 ntBASIC0.54□□□□□ -2.32
CBX4O00257 RNU6-267P-201ENST00000516714 103 ntBASIC0.54□□□□□ -2.32
CBX4O00257 uc_338.17-201ENST00000619633 179 ntBASIC0.54□□□□□ -2.32
CBX4O00257 SNORD44.1-201ENST00000363202 61 ntBASIC0.53□□□□□ -2.32
CBX4O00257 MIR5706-201ENST00000579841 80 ntBASIC0.53□□□□□ -2.32
CBX4O00257 U7.6-201ENST00000610841 64 ntBASIC0.53□□□□□ -2.32
CBX4O00257 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.53□□□□□ -2.32
CBX4O00257 MIRLET7D-201ENST00000362263 87 ntBASIC0.52□□□□□ -2.33
CBX4O00257 SNORA63.2-201ENST00000362603 126 ntBASIC0.52□□□□□ -2.33
CBX4O00257 RNU6-1051P-201ENST00000365471 102 ntBASIC0.52□□□□□ -2.33
CBX4O00257 SNORD110-201ENST00000408189 75 ntBASIC0.52□□□□□ -2.33
CBX4O00257 AC093423.1-201ENST00000440817 142 ntBASIC0.52□□□□□ -2.33
CBX4O00257 MIR6086-201ENST00000638065 55 ntBASIC0.52□□□□□ -2.33
CBX4O00257 RNU5F-1-201ENST00000362507 117 ntBASIC0.51□□□□□ -2.33
CBX4O00257 MIR450A2-201ENST00000385022 100 ntBASIC0.51□□□□□ -2.33
CBX4O00257 Y_RNA.611-201ENST00000410682 108 ntBASIC0.51□□□□□ -2.33
CBX4O00257 AC093729.1-201ENST00000513074 128 ntBASIC0.51□□□□□ -2.33
CBX4O00257 RNU7-153P-201ENST00000516455 62 ntBASIC0.51□□□□□ -2.33
CBX4O00257 AC069503.3-201ENST00000618674 145 ntBASIC0.51□□□□□ -2.33
CBX4O00257 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.51□□□□□ -2.33
CBX4O00257 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.5□□□□□ -2.33
CBX4O00257 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC0.5□□□□□ -2.33
CBX4O00257 RNU6-1052P-201ENST00000411398 104 ntBASIC0.5□□□□□ -2.33
CBX4O00257 AL157398.1-201ENST00000452981 186 ntBASIC0.5□□□□□ -2.33
CBX4O00257 RNU6-719P-201ENST00000516671 104 ntBASIC0.5□□□□□ -2.33
CBX4O00257 snoMBII-202.2-201ENST00000517263 86 ntBASIC0.5□□□□□ -2.33
CBX4O00257 SNORA70.25-201ENST00000612741 95 ntBASIC0.5□□□□□ -2.33
CBX4O00257 MIR548BB-201ENST00000626714 66 ntBASIC0.5□□□□□ -2.33
CBX4O00257 MT-TY-201ENST00000387409 66 ntBASIC0.49□□□□□ -2.33
CBX4O00257 SNORA62.5-201ENST00000516634 120 ntBASIC0.49□□□□□ -2.33
CBX4O00257 MIR2909-201ENST00000617113 69 ntBASIC0.49□□□□□ -2.33
CBX4O00257 AC090625.1-201ENST00000357130 210 ntBASIC0.48□□□□□ -2.33
CBX4O00257 MIR760-201ENST00000390220 80 ntBASIC0.48□□□□□ -2.33
CBX4O00257 AC114737.2-201ENST00000421583 173 ntBASIC0.48□□□□□ -2.33
CBX4O00257 RNA5SP285-201ENST00000516619 119 ntBASIC0.48□□□□□ -2.33
CBX4O00257 AC243829.6-201ENST00000612652 106 ntBASIC0.48□□□□□ -2.33
CBX4O00257 MIR6755-201ENST00000619993 66 ntBASIC0.48□□□□□ -2.33
CBX4O00257 MIR103A1-201ENST00000362165 78 ntBASIC0.47□□□□□ -2.33
CBX4O00257 RNU4ATAC4P-201ENST00000516307 126 ntBASIC0.47□□□□□ -2.33
CBX4O00257 MIR3140-201ENST00000583685 90 ntBASIC0.47□□□□□ -2.33
CBX4O00257 RNU1-29P-201ENST00000606574 126 ntBASIC0.47□□□□□ -2.33
CBX4O00257 MIR548O2-201ENST00000616090 70 ntBASIC0.47□□□□□ -2.33
CBX4O00257 RNU6-497P-201ENST00000365316 104 ntBASIC0.46□□□□□ -2.34
CBX4O00257 SNORA25.13-201ENST00000516395 103 ntBASIC0.46□□□□□ -2.34
CBX4O00257 YWHAEP2-201ENST00000580066 112 ntBASIC0.46□□□□□ -2.34
CBX4O00257 MIR494-201ENST00000349529 81 ntBASIC0.45□□□□□ -2.34
CBX4O00257 AC073261.1-201ENST00000429409 121 ntBASIC0.45□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 180.1 ms