Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 Y_RNA.437-201ENST00000384113 113 ntBASIC-0.27□□□□□ -2.45
TRAV40A0A0B4J280 RNU6-935P-201ENST00000410371 100 ntBASIC-0.27□□□□□ -2.45
TRAV40A0A0B4J280 MIR4636-201ENST00000582271 80 ntBASIC-0.27□□□□□ -2.45
TRAV40A0A0B4J280 MIR3140-201ENST00000583685 90 ntBASIC-0.27□□□□□ -2.45
TRAV40A0A0B4J280 AC145423.2-201ENST00000610631 239 ntBASIC-0.27□□□□□ -2.45
TRAV40A0A0B4J280 SNORD114-31-201ENST00000363219 75 ntBASIC-0.28□□□□□ -2.45
TRAV40A0A0B4J280 SNORA18.1-201ENST00000363418 128 ntBASIC-0.28□□□□□ -2.45
TRAV40A0A0B4J280 Y_RNA.185-201ENST00000363894 100 ntBASIC-0.28□□□□□ -2.45
TRAV40A0A0B4J280 RNU6-46P-201ENST00000383860 107 ntBASIC-0.28□□□□□ -2.45
TRAV40A0A0B4J280 FGF7P7-201ENST00000514120 227 ntBASIC-0.28□□□□□ -2.45
TRAV40A0A0B4J280 RNU6-1333P-201ENST00000516162 93 ntBASIC-0.28□□□□□ -2.45
TRAV40A0A0B4J280 Y_RNA.703-201ENST00000516846 111 ntBASIC-0.28□□□□□ -2.45
TRAV40A0A0B4J280 MIR5589-201ENST00000579442 60 ntBASIC-0.28□□□□□ -2.45
TRAV40A0A0B4J280 DLEU2_3.1-201ENST00000620005 73 ntBASIC-0.28□□□□□ -2.45
TRAV40A0A0B4J280 SNORD114-29-201ENST00000364819 70 ntBASIC-0.29□□□□□ -2.46
TRAV40A0A0B4J280 SNORD116-14-201ENST00000383894 92 ntBASIC-0.29□□□□□ -2.46
TRAV40A0A0B4J280 SNORD116-17-201ENST00000383929 92 ntBASIC-0.29□□□□□ -2.46
TRAV40A0A0B4J280 RNU6-1014P-201ENST00000383940 103 ntBASIC-0.29□□□□□ -2.46
TRAV40A0A0B4J280 Y_RNA.433-201ENST00000384089 102 ntBASIC-0.29□□□□□ -2.46
TRAV40A0A0B4J280 RNU6-1144P-201ENST00000384247 104 ntBASIC-0.29□□□□□ -2.46
TRAV40A0A0B4J280 SNORD116-15-201ENST00000384445 92 ntBASIC-0.29□□□□□ -2.46
TRAV40A0A0B4J280 SNORD116-19-201ENST00000384729 92 ntBASIC-0.29□□□□□ -2.46
TRAV40A0A0B4J280 AC104692.1-201ENST00000472406 90 ntBASIC-0.29□□□□□ -2.46
TRAV40A0A0B4J280 MIR3668-201ENST00000582138 75 ntBASIC-0.29□□□□□ -2.46
TRAV40A0A0B4J280 MIR4536-1-201ENST00000583537 88 ntBASIC-0.29□□□□□ -2.46
TRAV40A0A0B4J280 AL590491.3-201ENST00000610731 82 ntBASIC-0.29□□□□□ -2.46
TRAV40A0A0B4J280 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC-0.29□□□□□ -2.46
TRAV40A0A0B4J280 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC-0.29□□□□□ -2.46
TRAV40A0A0B4J280 SNORD114-11-201ENST00000363738 75 ntBASIC-0.3□□□□□ -2.46
TRAV40A0A0B4J280 RNU6-704P-201ENST00000364162 103 ntBASIC-0.3□□□□□ -2.46
TRAV40A0A0B4J280 Y_RNA.239-201ENST00000364444 113 ntBASIC-0.3□□□□□ -2.46
TRAV40A0A0B4J280 RNU6-35P-201ENST00000384530 107 ntBASIC-0.3□□□□□ -2.46
TRAV40A0A0B4J280 RNU6-813P-201ENST00000384691 107 ntBASIC-0.3□□□□□ -2.46
TRAV40A0A0B4J280 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-0.3□□□□□ -2.46
TRAV40A0A0B4J280 RNU6-65P-201ENST00000516332 98 ntBASIC-0.3□□□□□ -2.46
TRAV40A0A0B4J280 IGLVI-20-201ENST00000519296 130 ntBASIC-0.3□□□□□ -2.46
TRAV40A0A0B4J280 AP000676.1-201ENST00000533307 52 ntBASIC-0.3□□□□□ -2.46
TRAV40A0A0B4J280 AL365222.1-201ENST00000614661 98 ntBASIC-0.3□□□□□ -2.46
TRAV40A0A0B4J280 RNA5SP98-201ENST00000363158 137 ntBASIC-0.31□□□□□ -2.46
TRAV40A0A0B4J280 Y_RNA.281-201ENST00000364774 94 ntBASIC-0.31□□□□□ -2.46
TRAV40A0A0B4J280 RNU6-455P-201ENST00000384681 107 ntBASIC-0.31□□□□□ -2.46
TRAV40A0A0B4J280 RNA5SP292-201ENST00000390974 118 ntBASIC-0.31□□□□□ -2.46
TRAV40A0A0B4J280 MIR548E-201ENST00000408287 88 ntBASIC-0.31□□□□□ -2.46
TRAV40A0A0B4J280 Y_RNA.601-201ENST00000410500 113 ntBASIC-0.31□□□□□ -2.46
TRAV40A0A0B4J280 RNU6-1057P-201ENST00000517162 102 ntBASIC-0.31□□□□□ -2.46
TRAV40A0A0B4J280 MIR3064-201ENST00000581130 66 ntBASIC-0.31□□□□□ -2.46
TRAV40A0A0B4J280 MIR1295B-201ENST00000636144 60 ntBASIC-0.31□□□□□ -2.46
TRAV40A0A0B4J280 U6.95-201ENST00000636931 70 ntBASIC-0.31□□□□□ -2.46
TRAV40A0A0B4J280 MIR20A-201ENST00000362279 71 ntBASIC-0.32□□□□□ -2.46
TRAV40A0A0B4J280 Y_RNA.178-201ENST00000363832 102 ntBASIC-0.32□□□□□ -2.46
TRAV40A0A0B4J280 SNORD45B-201ENST00000364617 72 ntBASIC-0.32□□□□□ -2.46
TRAV40A0A0B4J280 RNU6-1107P-201ENST00000364817 104 ntBASIC-0.32□□□□□ -2.46
TRAV40A0A0B4J280 RNU6-1062P-201ENST00000383908 107 ntBASIC-0.32□□□□□ -2.46
TRAV40A0A0B4J280 SNORD116-21-201ENST00000384507 92 ntBASIC-0.32□□□□□ -2.46
TRAV40A0A0B4J280 MIR9-2-201ENST00000384838 87 ntBASIC-0.32□□□□□ -2.46
TRAV40A0A0B4J280 RNA5SP300-201ENST00000391197 107 ntBASIC-0.32□□□□□ -2.46
TRAV40A0A0B4J280 SNORD4B-201ENST00000459083 72 ntBASIC-0.32□□□□□ -2.46
TRAV40A0A0B4J280 MIR4788-201ENST00000639104 80 ntBASIC-0.32□□□□□ -2.46
TRAV40A0A0B4J280 RNU6-746P-201ENST00000384112 109 ntBASIC-0.33□□□□□ -2.46
TRAV40A0A0B4J280 RNU6-644P-201ENST00000391155 98 ntBASIC-0.33□□□□□ -2.46
TRAV40A0A0B4J280 SCARNA17.3-201ENST00000516381 125 ntBASIC-0.33□□□□□ -2.46
TRAV40A0A0B4J280 RNA5SP395-201ENST00000516567 118 ntBASIC-0.33□□□□□ -2.46
TRAV40A0A0B4J280 MIR3666-201ENST00000607845 111 ntBASIC-0.33□□□□□ -2.46
TRAV40A0A0B4J280 RNU6-959P-201ENST00000384671 107 ntBASIC-0.34□□□□□ -2.46
TRAV40A0A0B4J280 SNORA19-201ENST00000384737 128 ntBASIC-0.34□□□□□ -2.46
TRAV40A0A0B4J280 AC244090.1-201ENST00000441884 93 ntBASIC-0.34□□□□□ -2.46
TRAV40A0A0B4J280 RNU6-904P-201ENST00000516206 101 ntBASIC-0.34□□□□□ -2.46
TRAV40A0A0B4J280 RNU6-109P-201ENST00000516364 107 ntBASIC-0.34□□□□□ -2.46
TRAV40A0A0B4J280 Y_RNA.677-201ENST00000516401 85 ntBASIC-0.34□□□□□ -2.46
TRAV40A0A0B4J280 RNU6-184P-201ENST00000516514 107 ntBASIC-0.34□□□□□ -2.46
TRAV40A0A0B4J280 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.34□□□□□ -2.46
TRAV40A0A0B4J280 RNU6-537P-201ENST00000517277 103 ntBASIC-0.34□□□□□ -2.46
TRAV40A0A0B4J280 SNORA24B-201ENST00000384176 131 ntBASIC-0.35□□□□□ -2.47
TRAV40A0A0B4J280 RNU6-880P-201ENST00000384526 107 ntBASIC-0.35□□□□□ -2.47
TRAV40A0A0B4J280 SNORD56B-201ENST00000384713 71 ntBASIC-0.35□□□□□ -2.47
TRAV40A0A0B4J280 MIR590-201ENST00000385008 97 ntBASIC-0.35□□□□□ -2.47
TRAV40A0A0B4J280 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-0.35□□□□□ -2.47
TRAV40A0A0B4J280 RNA5SP169-201ENST00000517268 117 ntBASIC-0.35□□□□□ -2.47
TRAV40A0A0B4J280 MIR4439-201ENST00000583746 80 ntBASIC-0.35□□□□□ -2.47
TRAV40A0A0B4J280 AC104996.3-201ENST00000590718 94 ntBASIC-0.35□□□□□ -2.47
TRAV40A0A0B4J280 RNU6-990P-201ENST00000364385 104 ntBASIC-0.36□□□□□ -2.47
TRAV40A0A0B4J280 AL445193.1-201ENST00000441183 141 ntBASIC-0.36□□□□□ -2.47
TRAV40A0A0B4J280 snoU13.13-201ENST00000458842 104 ntBASIC-0.36□□□□□ -2.47
TRAV40A0A0B4J280 AC026421.1-201ENST00000519101 163 ntBASIC-0.36□□□□□ -2.47
TRAV40A0A0B4J280 AP001180.6-201ENST00000584918 159 ntBASIC-0.36□□□□□ -2.47
TRAV40A0A0B4J280 MIR6129-201ENST00000616087 109 ntBASIC-0.36□□□□□ -2.47
TRAV40A0A0B4J280 uc_338.36-201ENST00000622331 158 ntBASIC-0.36□□□□□ -2.47
TRAV40A0A0B4J280 RNU4-36P-201ENST00000364294 144 ntBASIC-0.37□□□□□ -2.47
TRAV40A0A0B4J280 RNU6-554P-201ENST00000410466 106 ntBASIC-0.37□□□□□ -2.47
TRAV40A0A0B4J280 SCARNA23-201ENST00000516060 130 ntBASIC-0.37□□□□□ -2.47
TRAV40A0A0B4J280 RNU6-162P-201ENST00000516228 103 ntBASIC-0.37□□□□□ -2.47
TRAV40A0A0B4J280 RNU6-320P-201ENST00000516511 106 ntBASIC-0.37□□□□□ -2.47
TRAV40A0A0B4J280 SNORA18.5-201ENST00000516616 101 ntBASIC-0.37□□□□□ -2.47
TRAV40A0A0B4J280 SNORA63.2-201ENST00000362603 126 ntBASIC-0.38□□□□□ -2.47
TRAV40A0A0B4J280 RNU6-1051P-201ENST00000365471 102 ntBASIC-0.38□□□□□ -2.47
TRAV40A0A0B4J280 SNORD58A-201ENST00000383875 65 ntBASIC-0.38□□□□□ -2.47
TRAV40A0A0B4J280 RNU6-106P-201ENST00000384405 107 ntBASIC-0.38□□□□□ -2.47
TRAV40A0A0B4J280 Y_RNA.491-201ENST00000384417 107 ntBASIC-0.38□□□□□ -2.47
TRAV40A0A0B4J280 RNU6-476P-201ENST00000384726 107 ntBASIC-0.38□□□□□ -2.47
TRAV40A0A0B4J280 U3.27-201ENST00000391237 200 ntBASIC-0.38□□□□□ -2.47
Retrieved 100 of 98,524 protein–RNA pairs in 168.1 ms