Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 RNU6-875P-201ENST00000516488 106 ntBASIC-1.46□□□□□ -2.64
CCDC88AQ3V6T2 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC-1.46□□□□□ -2.64
CCDC88AQ3V6T2 Y_RNA.773-201ENST00000607168 90 ntBASIC-1.46□□□□□ -2.64
CCDC88AQ3V6T2 AL365265.1-201ENST00000621045 234 ntBASIC-1.46□□□□□ -2.64
CCDC88AQ3V6T2 Y_RNA.232-201ENST00000364369 96 ntBASIC-1.46□□□□□ -2.64
CCDC88AQ3V6T2 MIR548H3-201ENST00000408771 118 ntBASIC-1.46□□□□□ -2.64
CCDC88AQ3V6T2 RNU6-935P-201ENST00000410371 100 ntBASIC-1.46□□□□□ -2.64
CCDC88AQ3V6T2 U6atac.1-201ENST00000616025 117 ntBASIC-1.46□□□□□ -2.64
CCDC88AQ3V6T2 RNY4P28-201ENST00000365281 93 ntBASIC-1.47□□□□□ -2.64
CCDC88AQ3V6T2 MIR496-201ENST00000385226 102 ntBASIC-1.47□□□□□ -2.64
CCDC88AQ3V6T2 AC097510.1-201ENST00000510945 133 ntBASIC-1.47□□□□□ -2.64
CCDC88AQ3V6T2 MIR4536-1-201ENST00000583537 88 ntBASIC-1.47□□□□□ -2.64
CCDC88AQ3V6T2 AC091912.2-201ENST00000624798 167 ntBASIC-1.47□□□□□ -2.64
CCDC88AQ3V6T2 AL512310.12-203ENST00000640543 90 ntBASIC-1.47□□□□□ -2.64
CCDC88AQ3V6T2 MIR369-201ENST00000362155 70 ntBASIC-1.48□□□□□ -2.65
CCDC88AQ3V6T2 Y_RNA.507-201ENST00000384500 99 ntBASIC-1.48□□□□□ -2.65
CCDC88AQ3V6T2 RNU6-1052P-201ENST00000411398 104 ntBASIC-1.48□□□□□ -2.65
CCDC88AQ3V6T2 RNU6-1247P-201ENST00000516622 98 ntBASIC-1.48□□□□□ -2.65
CCDC88AQ3V6T2 RNU6-719P-201ENST00000516671 104 ntBASIC-1.48□□□□□ -2.65
CCDC88AQ3V6T2 Y_RNA.250-201ENST00000364542 110 ntBASIC-1.48□□□□□ -2.65
CCDC88AQ3V6T2 Y_RNA.263-201ENST00000364659 114 ntBASIC-1.48□□□□□ -2.65
CCDC88AQ3V6T2 MIR147A-201ENST00000385079 72 ntBASIC-1.48□□□□□ -2.65
CCDC88AQ3V6T2 RNU6-588P-201ENST00000410281 105 ntBASIC-1.48□□□□□ -2.65
CCDC88AQ3V6T2 RNA5SP272-201ENST00000516095 111 ntBASIC-1.48□□□□□ -2.65
CCDC88AQ3V6T2 snoU83B.1-201ENST00000517136 88 ntBASIC-1.48□□□□□ -2.65
CCDC88AQ3V6T2 RNU4ATAC9P-201ENST00000517146 126 ntBASIC-1.48□□□□□ -2.65
CCDC88AQ3V6T2 RNU6-1313P-201ENST00000362622 102 ntBASIC-1.49□□□□□ -2.65
CCDC88AQ3V6T2 RNU6-363P-201ENST00000362895 105 ntBASIC-1.49□□□□□ -2.65
CCDC88AQ3V6T2 SNORD38.1-201ENST00000363863 68 ntBASIC-1.49□□□□□ -2.65
CCDC88AQ3V6T2 Y_RNA.455-201ENST00000384230 98 ntBASIC-1.49□□□□□ -2.65
CCDC88AQ3V6T2 MIR451A-201ENST00000385059 72 ntBASIC-1.49□□□□□ -2.65
CCDC88AQ3V6T2 MT-TI-201ENST00000387365 69 ntBASIC-1.49□□□□□ -2.65
CCDC88AQ3V6T2 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC-1.49□□□□□ -2.65
CCDC88AQ3V6T2 Y_RNA.797-201ENST00000515977 94 ntBASIC-1.49□□□□□ -2.65
CCDC88AQ3V6T2 RNU6-983P-201ENST00000516004 103 ntBASIC-1.49□□□□□ -2.65
CCDC88AQ3V6T2 RNU6-616P-201ENST00000384353 107 ntBASIC-1.5□□□□□ -2.65
CCDC88AQ3V6T2 Y_RNA.521-201ENST00000384560 114 ntBASIC-1.5□□□□□ -2.65
CCDC88AQ3V6T2 AL353813.1-201ENST00000440700 253 ntBASIC-1.5□□□□□ -2.65
CCDC88AQ3V6T2 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC-1.5□□□□□ -2.65
CCDC88AQ3V6T2 Y_RNA.158-201ENST00000363651 101 ntBASIC-1.5□□□□□ -2.65
CCDC88AQ3V6T2 Y_RNA.248-201ENST00000364501 109 ntBASIC-1.5□□□□□ -2.65
CCDC88AQ3V6T2 RNU6-450P-201ENST00000364654 107 ntBASIC-1.5□□□□□ -2.65
CCDC88AQ3V6T2 SNORA15B-2-201ENST00000384058 135 ntBASIC-1.5□□□□□ -2.65
CCDC88AQ3V6T2 SNORA15B-1-201ENST00000384334 135 ntBASIC-1.5□□□□□ -2.65
CCDC88AQ3V6T2 MIR34C-201ENST00000384831 77 ntBASIC-1.5□□□□□ -2.65
CCDC88AQ3V6T2 MIR759-201ENST00000390224 91 ntBASIC-1.5□□□□□ -2.65
CCDC88AQ3V6T2 RNU6-54P-201ENST00000365563 107 ntBASIC-1.51□□□□□ -2.65
CCDC88AQ3V6T2 SNORA26.4-201ENST00000391188 123 ntBASIC-1.51□□□□□ -2.65
CCDC88AQ3V6T2 Y_RNA.237-201ENST00000364439 102 ntBASIC-1.52□□□□□ -2.65
CCDC88AQ3V6T2 Y_RNA.244-201ENST00000364484 109 ntBASIC-1.52□□□□□ -2.65
CCDC88AQ3V6T2 MIR527-201ENST00000385244 85 ntBASIC-1.52□□□□□ -2.65
CCDC88AQ3V6T2 RNU6-466P-201ENST00000391224 103 ntBASIC-1.52□□□□□ -2.65
CCDC88AQ3V6T2 AL445584.3-201ENST00000617173 78 ntBASIC-1.52□□□□□ -2.65
CCDC88AQ3V6T2 Y_RNA.76-201ENST00000362931 109 ntBASIC-1.52□□□□□ -2.65
CCDC88AQ3V6T2 RNU6-508P-201ENST00000363231 103 ntBASIC-1.52□□□□□ -2.65
CCDC88AQ3V6T2 SNORD114-17-201ENST00000364699 75 ntBASIC-1.52□□□□□ -2.65
CCDC88AQ3V6T2 SNORD42B-201ENST00000458893 67 ntBASIC-1.52□□□□□ -2.65
CCDC88AQ3V6T2 RNY3P16-201ENST00000516338 101 ntBASIC-1.52□□□□□ -2.65
CCDC88AQ3V6T2 AC134503.1-201ENST00000633048 54 ntBASIC-1.52□□□□□ -2.65
CCDC88AQ3V6T2 MIR1255B1-201ENST00000636325 63 ntBASIC-1.52□□□□□ -2.65
CCDC88AQ3V6T2 SNORA75.5-201ENST00000391291 81 ntBASIC-1.53□□□□□ -2.65
CCDC88AQ3V6T2 MIR8485-201ENST00000401372 91 ntBASIC-1.53□□□□□ -2.65
CCDC88AQ3V6T2 RNU6-1125P-201ENST00000363601 107 ntBASIC-1.54□□□□□ -2.66
CCDC88AQ3V6T2 MIR29B1-201ENST00000385015 81 ntBASIC-1.54□□□□□ -2.66
CCDC88AQ3V6T2 RBMX2P4-201ENST00000441256 376 ntBASIC-1.54□□□□□ -2.66
CCDC88AQ3V6T2 MTND1P19-201ENST00000511780 315 ntBASIC-1.54□□□□□ -2.66
CCDC88AQ3V6T2 MIRLET7F1-201ENST00000362202 87 ntBASIC-1.54□□□□□ -2.66
CCDC88AQ3V6T2 RNU6-924P-201ENST00000362926 108 ntBASIC-1.54□□□□□ -2.66
CCDC88AQ3V6T2 MIR124-2-201ENST00000385081 109 ntBASIC-1.54□□□□□ -2.66
CCDC88AQ3V6T2 RNU6-493P-201ENST00000391321 108 ntBASIC-1.54□□□□□ -2.66
CCDC88AQ3V6T2 Y_RNA.793-201ENST00000411222 111 ntBASIC-1.54□□□□□ -2.66
CCDC88AQ3V6T2 MTATP6P21-201ENST00000440681 189 ntBASIC-1.54□□□□□ -2.66
CCDC88AQ3V6T2 MTND5P20-201ENST00000448677 143 ntBASIC-1.54□□□□□ -2.66
CCDC88AQ3V6T2 MIR6739-201ENST00000622461 75 ntBASIC-1.54□□□□□ -2.66
CCDC88AQ3V6T2 Y_RNA.58-201ENST00000362807 102 ntBASIC-1.55□□□□□ -2.66
CCDC88AQ3V6T2 Y_RNA.128-201ENST00000363391 112 ntBASIC-1.55□□□□□ -2.66
CCDC88AQ3V6T2 RNU6-312P-201ENST00000364629 107 ntBASIC-1.55□□□□□ -2.66
CCDC88AQ3V6T2 RNY3P1-201ENST00000365085 102 ntBASIC-1.55□□□□□ -2.66
CCDC88AQ3V6T2 SNORD50.2-201ENST00000365465 70 ntBASIC-1.55□□□□□ -2.66
CCDC88AQ3V6T2 Y_RNA.401-201ENST00000383965 117 ntBASIC-1.55□□□□□ -2.66
CCDC88AQ3V6T2 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-1.55□□□□□ -2.66
CCDC88AQ3V6T2 MIR3163-201ENST00000581592 73 ntBASIC-1.55□□□□□ -2.66
CCDC88AQ3V6T2 DNAJC19P2-201ENST00000593340 302 ntBASIC-1.55□□□□□ -2.66
CCDC88AQ3V6T2 AC108081.1-201ENST00000604358 221 ntBASIC-1.55□□□□□ -2.66
CCDC88AQ3V6T2 U2.14-201ENST00000615943 113 ntBASIC-1.55□□□□□ -2.66
CCDC88AQ3V6T2 CYP3A54P-201ENST00000566950 75 ntBASIC-1.56□□□□□ -2.66
CCDC88AQ3V6T2 AL353803.5-201ENST00000599815 141 ntBASIC-1.56□□□□□ -2.66
CCDC88AQ3V6T2 UBL4A-207ENST00000630530 102 ntTSL 5 BASIC-1.56□□□□□ -2.66
CCDC88AQ3V6T2 RNU6-208P-201ENST00000362431 107 ntBASIC-1.56□□□□□ -2.66
CCDC88AQ3V6T2 Y_RNA.114-201ENST00000363265 113 ntBASIC-1.56□□□□□ -2.66
CCDC88AQ3V6T2 MIR548G-201ENST00000408442 89 ntBASIC-1.56□□□□□ -2.66
CCDC88AQ3V6T2 AL589823.1-201ENST00000429577 183 ntBASIC-1.56□□□□□ -2.66
CCDC88AQ3V6T2 U6.106-201ENST00000636360 105 ntBASIC-1.56□□□□□ -2.66
CCDC88AQ3V6T2 AC132825.6-201ENST00000638861 357 ntBASIC-1.56□□□□□ -2.66
CCDC88AQ3V6T2 Y_RNA.225-201ENST00000364326 97 ntBASIC-1.57□□□□□ -2.66
CCDC88AQ3V6T2 AL161932.1-201ENST00000437408 146 ntBASIC-1.57□□□□□ -2.66
CCDC88AQ3V6T2 RNY4-201ENST00000516507 96 ntBASIC-1.57□□□□□ -2.66
CCDC88AQ3V6T2 SNORA63.2-201ENST00000362603 126 ntBASIC-1.58□□□□□ -2.66
CCDC88AQ3V6T2 RNU6-275P-201ENST00000364910 107 ntBASIC-1.58□□□□□ -2.66
CCDC88AQ3V6T2 RNU6-1271P-201ENST00000517049 105 ntBASIC-1.58□□□□□ -2.66
Retrieved 100 of 98,524 protein–RNA pairs in 273.9 ms