Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 U6.100-201ENST00000636230 99 ntBASIC0.66□□□□□ -2.3
LMO4P61968 MIRLET7F1-201ENST00000362202 87 ntBASIC0.65□□□□□ -2.31
LMO4P61968 RNU6-228P-201ENST00000362700 106 ntBASIC0.65□□□□□ -2.31
LMO4P61968 Y_RNA.174-201ENST00000363781 105 ntBASIC0.65□□□□□ -2.31
LMO4P61968 Y_RNA.221-201ENST00000364248 96 ntBASIC0.65□□□□□ -2.31
LMO4P61968 RNU6-787P-201ENST00000384032 107 ntBASIC0.65□□□□□ -2.31
LMO4P61968 Y_RNA.540-201ENST00000384638 111 ntBASIC0.65□□□□□ -2.31
LMO4P61968 MIR608-201ENST00000384820 100 ntBASIC0.65□□□□□ -2.31
LMO4P61968 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC0.65□□□□□ -2.31
LMO4P61968 MIR1236-201ENST00000408340 102 ntBASIC0.65□□□□□ -2.31
LMO4P61968 AC093729.1-201ENST00000513074 128 ntBASIC0.65□□□□□ -2.31
LMO4P61968 AC104996.3-201ENST00000590718 94 ntBASIC0.65□□□□□ -2.31
LMO4P61968 SNORD115-37-201ENST00000363768 82 ntBASIC0.64□□□□□ -2.31
LMO4P61968 SNORD114-2-201ENST00000363953 78 ntBASIC0.64□□□□□ -2.31
LMO4P61968 RNU6-1124P-201ENST00000384169 107 ntBASIC0.64□□□□□ -2.31
LMO4P61968 MIR598-201ENST00000384868 97 ntBASIC0.64□□□□□ -2.31
LMO4P61968 MIR573-201ENST00000384964 99 ntBASIC0.64□□□□□ -2.31
LMO4P61968 MIR644A-201ENST00000385262 94 ntBASIC0.64□□□□□ -2.31
LMO4P61968 SNORD78.1-201ENST00000390866 65 ntBASIC0.64□□□□□ -2.31
LMO4P61968 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.64□□□□□ -2.31
LMO4P61968 RPL39P28-201ENST00000465655 155 ntBASIC0.64□□□□□ -2.31
LMO4P61968 MIR4666B-201ENST00000578142 81 ntBASIC0.64□□□□□ -2.31
LMO4P61968 PVT1_3.1-201ENST00000620853 95 ntBASIC0.64□□□□□ -2.31
LMO4P61968 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.63□□□□□ -2.31
LMO4P61968 SNORD115-24-201ENST00000363528 82 ntBASIC0.63□□□□□ -2.31
LMO4P61968 Y_RNA.437-201ENST00000384113 113 ntBASIC0.63□□□□□ -2.31
LMO4P61968 Y_RNA.491-201ENST00000384417 107 ntBASIC0.63□□□□□ -2.31
LMO4P61968 MIR548U-201ENST00000390728 81 ntBASIC0.63□□□□□ -2.31
LMO4P61968 RNU6-1275P-201ENST00000391087 107 ntBASIC0.63□□□□□ -2.31
LMO4P61968 SNORD90-201ENST00000391145 111 ntBASIC0.63□□□□□ -2.31
LMO4P61968 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC0.63□□□□□ -2.31
LMO4P61968 Y_RNA.607-201ENST00000410597 98 ntBASIC0.63□□□□□ -2.31
LMO4P61968 SNORA18.5-201ENST00000516616 101 ntBASIC0.63□□□□□ -2.31
LMO4P61968 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.63□□□□□ -2.31
LMO4P61968 AC140658.3-201ENST00000567603 271 ntBASIC0.63□□□□□ -2.31
LMO4P61968 MIR3612-201ENST00000579753 87 ntBASIC0.63□□□□□ -2.31
LMO4P61968 MIR4714-201ENST00000580728 77 ntBASIC0.63□□□□□ -2.31
LMO4P61968 AC025627.3-201ENST00000582078 182 ntBASIC0.63□□□□□ -2.31
LMO4P61968 MTRNR2L2-201ENST00000604882 87 ntBASIC0.63□□□□□ -2.31
LMO4P61968 MIR6835-201ENST00000621552 64 ntBASIC0.63□□□□□ -2.31
LMO4P61968 MIR3202-2-201ENST00000635980 79 ntBASIC0.63□□□□□ -2.31
LMO4P61968 MIR6866-201ENST00000638146 69 ntBASIC0.63□□□□□ -2.31
LMO4P61968 RNA5SP403-201ENST00000363598 108 ntBASIC0.62□□□□□ -2.31
LMO4P61968 RNA5SP117-201ENST00000365294 118 ntBASIC0.62□□□□□ -2.31
LMO4P61968 SNORD101-201ENST00000384027 73 ntBASIC0.62□□□□□ -2.31
LMO4P61968 SNORD99-201ENST00000408612 74 ntBASIC0.62□□□□□ -2.31
LMO4P61968 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC0.62□□□□□ -2.31
LMO4P61968 SNORA25.13-201ENST00000516395 103 ntBASIC0.62□□□□□ -2.31
LMO4P61968 RNU7-161P-201ENST00000517289 62 ntBASIC0.62□□□□□ -2.31
LMO4P61968 MIR4796-201ENST00000580742 81 ntBASIC0.62□□□□□ -2.31
LMO4P61968 MIR4696-201ENST00000581431 70 ntBASIC0.62□□□□□ -2.31
LMO4P61968 RNU6-664P-201ENST00000362381 107 ntBASIC0.61□□□□□ -2.31
LMO4P61968 Y_RNA.313-201ENST00000365095 103 ntBASIC0.61□□□□□ -2.31
LMO4P61968 Y_RNA.316-201ENST00000365118 111 ntBASIC0.61□□□□□ -2.31
LMO4P61968 RNU6-652P-201ENST00000365488 107 ntBASIC0.61□□□□□ -2.31
LMO4P61968 Y_RNA.596-201ENST00000410462 109 ntBASIC0.61□□□□□ -2.31
LMO4P61968 RNA5SP225-201ENST00000410874 135 ntBASIC0.61□□□□□ -2.31
LMO4P61968 AC244098.3-201ENST00000424803 96 ntBASIC0.61□□□□□ -2.31
LMO4P61968 AL353765.1-201ENST00000605514 183 ntBASIC0.61□□□□□ -2.31
LMO4P61968 RNY1P8-201ENST00000383970 114 ntBASIC0.6□□□□□ -2.31
LMO4P61968 MIR1255A-201ENST00000408338 113 ntBASIC0.6□□□□□ -2.31
LMO4P61968 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC0.6□□□□□ -2.31
LMO4P61968 RNU7-104P-201ENST00000459398 79 ntBASIC0.6□□□□□ -2.31
LMO4P61968 AC011195.1-201ENST00000578177 177 ntBASIC0.6□□□□□ -2.31
LMO4P61968 SNORD18A-201ENST00000363753 72 ntBASIC0.59□□□□□ -2.31
LMO4P61968 Y_RNA.207-201ENST00000364142 106 ntBASIC0.59□□□□□ -2.31
LMO4P61968 Y_RNA.239-201ENST00000364444 113 ntBASIC0.59□□□□□ -2.31
LMO4P61968 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.59□□□□□ -2.31
LMO4P61968 SNORD28-201ENST00000384706 75 ntBASIC0.59□□□□□ -2.31
LMO4P61968 MIR508-201ENST00000384857 115 ntBASIC0.59□□□□□ -2.31
LMO4P61968 RNU6-935P-201ENST00000410371 100 ntBASIC0.59□□□□□ -2.31
LMO4P61968 RNU6-469P-201ENST00000516253 101 ntBASIC0.59□□□□□ -2.31
LMO4P61968 RNU7-13P-201ENST00000516413 62 ntBASIC0.59□□□□□ -2.31
LMO4P61968 Y_RNA.685-201ENST00000516532 108 ntBASIC0.59□□□□□ -2.31
LMO4P61968 RNU6-135P-201ENST00000516769 101 ntBASIC0.59□□□□□ -2.31
LMO4P61968 MIR3678-201ENST00000578455 94 ntBASIC0.59□□□□□ -2.31
LMO4P61968 MIR548AG2-201ENST00000581228 64 ntBASIC0.59□□□□□ -2.31
LMO4P61968 MIR4639-201ENST00000584938 69 ntBASIC0.59□□□□□ -2.31
LMO4P61968 MIR4653-201ENST00000585107 83 ntBASIC0.59□□□□□ -2.31
LMO4P61968 MIR18A-201ENST00000362310 71 ntBASIC0.58□□□□□ -2.32
LMO4P61968 RNU6-624P-201ENST00000363411 107 ntBASIC0.58□□□□□ -2.32
LMO4P61968 RNU6-478P-201ENST00000363904 110 ntBASIC0.58□□□□□ -2.32
LMO4P61968 AL450471.1-201ENST00000447509 127 ntBASIC0.58□□□□□ -2.32
LMO4P61968 RNU6-287P-201ENST00000516230 98 ntBASIC0.58□□□□□ -2.32
LMO4P61968 RNA5SP395-201ENST00000516567 118 ntBASIC0.58□□□□□ -2.32
LMO4P61968 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC0.58□□□□□ -2.32
LMO4P61968 MIR3920-201ENST00000581751 86 ntBASIC0.58□□□□□ -2.32
LMO4P61968 AL590095.2-201ENST00000604136 117 ntBASIC0.58□□□□□ -2.32
LMO4P61968 DLEU2_3.1-201ENST00000620005 73 ntBASIC0.58□□□□□ -2.32
LMO4P61968 AC244669.1-204ENST00000621564 178 ntBASIC0.58□□□□□ -2.32
LMO4P61968 SNORA63.2-201ENST00000362603 126 ntBASIC0.57□□□□□ -2.32
LMO4P61968 Y_RNA.94-201ENST00000363068 106 ntBASIC0.57□□□□□ -2.32
LMO4P61968 RNU6-1229P-201ENST00000364295 107 ntBASIC0.57□□□□□ -2.32
LMO4P61968 SNORD115-44-201ENST00000365391 82 ntBASIC0.57□□□□□ -2.32
LMO4P61968 RNU6-1126P-201ENST00000384002 107 ntBASIC0.57□□□□□ -2.32
LMO4P61968 RNU6-110P-201ENST00000384508 104 ntBASIC0.57□□□□□ -2.32
LMO4P61968 MIR451A-201ENST00000385059 72 ntBASIC0.57□□□□□ -2.32
LMO4P61968 RNU6-129P-201ENST00000391022 107 ntBASIC0.57□□□□□ -2.32
LMO4P61968 MIR2113-201ENST00000459007 91 ntBASIC0.57□□□□□ -2.32
LMO4P61968 RNU6-1108P-201ENST00000516308 104 ntBASIC0.57□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 147.1 ms