Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 MT-TY-201ENST00000387409 66 ntBASIC-0.2□□□□□ -2.44
MSH4O15457 SNORA40-201ENST00000388090 126 ntBASIC-0.2□□□□□ -2.44
MSH4O15457 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC-0.2□□□□□ -2.44
MSH4O15457 SNORD4A-201ENST00000459174 72 ntBASIC-0.2□□□□□ -2.44
MSH4O15457 snoU13.11-201ENST00000459219 104 ntBASIC-0.2□□□□□ -2.44
MSH4O15457 RNU6-794P-201ENST00000517261 64 ntBASIC-0.2□□□□□ -2.44
MSH4O15457 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC-0.2□□□□□ -2.44
MSH4O15457 uc_338.10-201ENST00000621872 182 ntBASIC-0.2□□□□□ -2.44
MSH4O15457 Y_RNA.343-201ENST00000365354 112 ntBASIC-0.21□□□□□ -2.44
MSH4O15457 Y_RNA.346-201ENST00000365385 112 ntBASIC-0.21□□□□□ -2.44
MSH4O15457 Y_RNA.377-201ENST00000365644 108 ntBASIC-0.21□□□□□ -2.44
MSH4O15457 Y_RNA.568-201ENST00000384742 113 ntBASIC-0.21□□□□□ -2.44
MSH4O15457 MIR1912-201ENST00000410389 80 ntBASIC-0.21□□□□□ -2.44
MSH4O15457 RNU6-971P-201ENST00000516920 106 ntBASIC-0.21□□□□□ -2.44
MSH4O15457 RNU4ATAC9P-201ENST00000517146 126 ntBASIC-0.21□□□□□ -2.44
MSH4O15457 MIR6507-201ENST00000613630 70 ntBASIC-0.21□□□□□ -2.44
MSH4O15457 Evf-2_5p.1-201ENST00000614213 142 ntBASIC-0.21□□□□□ -2.44
MSH4O15457 AL035470.1-201ENST00000622571 220 ntBASIC-0.21□□□□□ -2.44
MSH4O15457 AL157777.2-201ENST00000258070 137 ntBASIC-0.22□□□□□ -2.44
MSH4O15457 MIR655-201ENST00000362159 97 ntBASIC-0.22□□□□□ -2.44
MSH4O15457 SNORD114-31-201ENST00000363219 75 ntBASIC-0.22□□□□□ -2.44
MSH4O15457 U8.6-201ENST00000364939 135 ntBASIC-0.22□□□□□ -2.44
MSH4O15457 Y_RNA.506-201ENST00000384494 102 ntBASIC-0.22□□□□□ -2.44
MSH4O15457 Y_RNA.549-201ENST00000384657 102 ntBASIC-0.22□□□□□ -2.44
MSH4O15457 MIR577-201ENST00000385196 96 ntBASIC-0.22□□□□□ -2.44
MSH4O15457 RNU4ATAC4P-201ENST00000516307 126 ntBASIC-0.22□□□□□ -2.44
MSH4O15457 AC007012.1-201ENST00000567192 175 ntBASIC-0.22□□□□□ -2.44
MSH4O15457 MIR4679-2-201ENST00000578358 77 ntBASIC-0.22□□□□□ -2.44
MSH4O15457 MIR4696-201ENST00000581431 70 ntBASIC-0.22□□□□□ -2.44
MSH4O15457 RNU6-86P-201ENST00000606534 107 ntBASIC-0.22□□□□□ -2.44
MSH4O15457 RNA5SP98-201ENST00000363158 137 ntBASIC-0.23□□□□□ -2.45
MSH4O15457 RNY1P5-201ENST00000383890 115 ntBASIC-0.23□□□□□ -2.45
MSH4O15457 MIR548A1-201ENST00000385041 97 ntBASIC-0.23□□□□□ -2.45
MSH4O15457 RNA5SP395-201ENST00000516567 118 ntBASIC-0.23□□□□□ -2.45
MSH4O15457 RNU6-175P-201ENST00000516896 107 ntBASIC-0.23□□□□□ -2.45
MSH4O15457 RNU6-664P-201ENST00000362381 107 ntBASIC-0.24□□□□□ -2.45
MSH4O15457 Y_RNA.283-201ENST00000364798 112 ntBASIC-0.24□□□□□ -2.45
MSH4O15457 SNORD114-29-201ENST00000364819 70 ntBASIC-0.24□□□□□ -2.45
MSH4O15457 SNORD49B-201ENST00000365172 72 ntBASIC-0.24□□□□□ -2.45
MSH4O15457 MIR539-201ENST00000365690 78 ntBASIC-0.24□□□□□ -2.45
MSH4O15457 Y_RNA.407-201ENST00000383986 113 ntBASIC-0.24□□□□□ -2.45
MSH4O15457 SNORD101-201ENST00000384027 73 ntBASIC-0.24□□□□□ -2.45
MSH4O15457 RNU6-154P-201ENST00000384306 106 ntBASIC-0.24□□□□□ -2.45
MSH4O15457 RNU6-907P-201ENST00000390924 102 ntBASIC-0.24□□□□□ -2.45
MSH4O15457 RNU6-466P-201ENST00000391224 103 ntBASIC-0.24□□□□□ -2.45
MSH4O15457 AC244250.2-201ENST00000418731 148 ntBASIC-0.24□□□□□ -2.45
MSH4O15457 Y_RNA.659-201ENST00000515994 113 ntBASIC-0.24□□□□□ -2.45
MSH4O15457 MIR4694-201ENST00000578534 80 ntBASIC-0.24□□□□□ -2.45
MSH4O15457 AC096720.1-201ENST00000604441 183 ntBASIC-0.24□□□□□ -2.45
MSH4O15457 MIR3666-201ENST00000607845 111 ntBASIC-0.24□□□□□ -2.45
MSH4O15457 AC025521.1-201ENST00000621624 286 ntBASIC-0.24□□□□□ -2.45
MSH4O15457 RNU6-1125P-201ENST00000363601 107 ntBASIC-0.25□□□□□ -2.45
MSH4O15457 RNU6-1244P-201ENST00000363614 108 ntBASIC-0.25□□□□□ -2.45
MSH4O15457 Y_RNA.163-201ENST00000363702 113 ntBASIC-0.25□□□□□ -2.45
MSH4O15457 RNA5SP205-201ENST00000364653 136 ntBASIC-0.25□□□□□ -2.45
MSH4O15457 Y_RNA.309-201ENST00000365046 111 ntBASIC-0.25□□□□□ -2.45
MSH4O15457 RNU6-811P-201ENST00000384069 107 ntBASIC-0.25□□□□□ -2.45
MSH4O15457 RNU6-480P-201ENST00000384332 107 ntBASIC-0.25□□□□□ -2.45
MSH4O15457 RNU6-35P-201ENST00000384530 107 ntBASIC-0.25□□□□□ -2.45
MSH4O15457 RNU6-75P-201ENST00000515944 104 ntBASIC-0.25□□□□□ -2.45
MSH4O15457 MIR5589-201ENST00000579442 60 ntBASIC-0.25□□□□□ -2.45
MSH4O15457 MIR3613-201ENST00000579844 87 ntBASIC-0.25□□□□□ -2.45
MSH4O15457 MIR548O2-201ENST00000616090 70 ntBASIC-0.25□□□□□ -2.45
MSH4O15457 RNU6-832P-201ENST00000363319 107 ntBASIC-0.26□□□□□ -2.45
MSH4O15457 MIR216B-201ENST00000390186 82 ntBASIC-0.26□□□□□ -2.45
MSH4O15457 Y_RNA.586-201ENST00000391146 98 ntBASIC-0.26□□□□□ -2.45
MSH4O15457 RNA5SP300-201ENST00000391197 107 ntBASIC-0.26□□□□□ -2.45
MSH4O15457 Y_RNA.649-201ENST00000459077 103 ntBASIC-0.26□□□□□ -2.45
MSH4O15457 Y_RNA.648-201ENST00000459455 110 ntBASIC-0.26□□□□□ -2.45
MSH4O15457 MIR3914-2-201ENST00000637339 95 ntBASIC-0.26□□□□□ -2.45
MSH4O15457 RNY3P2-201ENST00000362918 102 ntBASIC-0.27□□□□□ -2.45
MSH4O15457 MIR652-201ENST00000385278 98 ntBASIC-0.27□□□□□ -2.45
MSH4O15457 Y_RNA.712-201ENST00000517011 92 ntBASIC-0.27□□□□□ -2.45
MSH4O15457 RNU6-1057P-201ENST00000517162 102 ntBASIC-0.27□□□□□ -2.45
MSH4O15457 AC068339.1-201ENST00000526965 141 ntBASIC-0.27□□□□□ -2.45
MSH4O15457 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC-0.27□□□□□ -2.45
MSH4O15457 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC-0.27□□□□□ -2.45
MSH4O15457 Y_RNA.178-201ENST00000363832 102 ntBASIC-0.28□□□□□ -2.45
MSH4O15457 SNORD50.2-201ENST00000365465 70 ntBASIC-0.28□□□□□ -2.45
MSH4O15457 RNU6-80P-201ENST00000384195 107 ntBASIC-0.28□□□□□ -2.45
MSH4O15457 RNU6-935P-201ENST00000410371 100 ntBASIC-0.28□□□□□ -2.45
MSH4O15457 RNU6-1052P-201ENST00000411398 104 ntBASIC-0.28□□□□□ -2.45
MSH4O15457 SNORD33.1-201ENST00000516213 88 ntBASIC-0.28□□□□□ -2.45
MSH4O15457 RNU6-719P-201ENST00000516671 104 ntBASIC-0.28□□□□□ -2.45
MSH4O15457 RNU6-762P-201ENST00000517107 102 ntBASIC-0.28□□□□□ -2.45
MSH4O15457 MIRLET7F1-201ENST00000362202 87 ntBASIC-0.29□□□□□ -2.46
MSH4O15457 MIR20A-201ENST00000362279 71 ntBASIC-0.29□□□□□ -2.46
MSH4O15457 Y_RNA.218-201ENST00000364218 104 ntBASIC-0.29□□□□□ -2.46
MSH4O15457 RNU6-1036P-201ENST00000383959 104 ntBASIC-0.29□□□□□ -2.46
MSH4O15457 Y_RNA.437-201ENST00000384113 113 ntBASIC-0.29□□□□□ -2.46
MSH4O15457 RNU6-1144P-201ENST00000384247 104 ntBASIC-0.29□□□□□ -2.46
MSH4O15457 AC244090.1-201ENST00000441884 93 ntBASIC-0.29□□□□□ -2.46
MSH4O15457 RNU6-659P-201ENST00000516454 104 ntBASIC-0.29□□□□□ -2.46
MSH4O15457 MIR5009-201ENST00000578736 100 ntBASIC-0.29□□□□□ -2.46
MSH4O15457 MIR4439-201ENST00000583746 80 ntBASIC-0.29□□□□□ -2.46
MSH4O15457 MIR4263-201ENST00000584745 83 ntBASIC-0.29□□□□□ -2.46
MSH4O15457 AL590491.3-201ENST00000610731 82 ntBASIC-0.29□□□□□ -2.46
MSH4O15457 RNU6-774P-201ENST00000363238 107 ntBASIC-0.3□□□□□ -2.46
MSH4O15457 SNORD114-28-201ENST00000363610 72 ntBASIC-0.3□□□□□ -2.46
MSH4O15457 Y_RNA.239-201ENST00000364444 113 ntBASIC-0.3□□□□□ -2.46
Retrieved 100 of 98,524 protein–RNA pairs in 237.6 ms