Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 MIR924-201ENST00000638017 53 ntBASIC1□□□□□ -2.25
DKK3Q9UBP4 Y_RNA.57-201ENST00000362806 113 ntBASIC0.99□□□□□ -2.25
DKK3Q9UBP4 MIR5582-201ENST00000579697 68 ntBASIC0.99□□□□□ -2.25
DKK3Q9UBP4 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC0.99□□□□□ -2.25
DKK3Q9UBP4 RNU6-291P-201ENST00000384720 107 ntBASIC0.98□□□□□ -2.25
DKK3Q9UBP4 MIR520H-201ENST00000385126 88 ntBASIC0.98□□□□□ -2.25
DKK3Q9UBP4 RNU6-1254P-201ENST00000391266 104 ntBASIC0.98□□□□□ -2.25
DKK3Q9UBP4 SNORD63B-201ENST00000411005 70 ntBASIC0.98□□□□□ -2.25
DKK3Q9UBP4 AC092628.1-201ENST00000436250 252 ntBASIC0.98□□□□□ -2.25
DKK3Q9UBP4 TRAJ51-201ENST00000504127 63 ntBASIC0.98□□□□□ -2.25
DKK3Q9UBP4 AC138907.6-201ENST00000568401 126 ntBASIC0.98□□□□□ -2.25
DKK3Q9UBP4 AC138869.1-201ENST00000568623 124 ntBASIC0.98□□□□□ -2.25
DKK3Q9UBP4 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.97□□□□□ -2.25
DKK3Q9UBP4 SNORD36A-201ENST00000362874 73 ntBASIC0.97□□□□□ -2.25
DKK3Q9UBP4 RNU6-1255P-201ENST00000363434 112 ntBASIC0.97□□□□□ -2.25
DKK3Q9UBP4 RNA5SP62-201ENST00000363457 110 ntBASIC0.97□□□□□ -2.25
DKK3Q9UBP4 Y_RNA.174-201ENST00000363781 105 ntBASIC0.97□□□□□ -2.25
DKK3Q9UBP4 RNU6-535P-201ENST00000384722 107 ntBASIC0.97□□□□□ -2.25
DKK3Q9UBP4 MIR532-201ENST00000385025 91 ntBASIC0.97□□□□□ -2.25
DKK3Q9UBP4 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.97□□□□□ -2.25
DKK3Q9UBP4 RNU7-106P-201ENST00000459514 67 ntBASIC0.97□□□□□ -2.25
DKK3Q9UBP4 AL513043.2-201ENST00000573941 143 ntBASIC0.97□□□□□ -2.25
DKK3Q9UBP4 RNA5SP257-201ENST00000363023 116 ntBASIC0.96□□□□□ -2.26
DKK3Q9UBP4 RNU6-1131P-201ENST00000364955 107 ntBASIC0.96□□□□□ -2.26
DKK3Q9UBP4 MIR516A2-201ENST00000384888 90 ntBASIC0.96□□□□□ -2.26
DKK3Q9UBP4 MIR516A1-201ENST00000385033 90 ntBASIC0.96□□□□□ -2.26
DKK3Q9UBP4 MIR6857-201ENST00000613267 93 ntBASIC0.96□□□□□ -2.26
DKK3Q9UBP4 AC025521.1-201ENST00000621624 286 ntBASIC0.96□□□□□ -2.26
DKK3Q9UBP4 uc_338.16-201ENST00000621804 95 ntBASIC0.96□□□□□ -2.26
DKK3Q9UBP4 RNU6-1260P-201ENST00000362944 107 ntBASIC0.95□□□□□ -2.26
DKK3Q9UBP4 RNU6-49P-201ENST00000384256 107 ntBASIC0.95□□□□□ -2.26
DKK3Q9UBP4 AC002350.1-201ENST00000490759 375 ntBASIC0.95□□□□□ -2.26
DKK3Q9UBP4 RNU6-162P-201ENST00000516228 103 ntBASIC0.95□□□□□ -2.26
DKK3Q9UBP4 RNU6-844P-201ENST00000517175 102 ntBASIC0.95□□□□□ -2.26
DKK3Q9UBP4 AL109933.3-201ENST00000619095 188 ntBASIC0.95□□□□□ -2.26
DKK3Q9UBP4 RNU6-243P-201ENST00000391140 107 ntBASIC0.94□□□□□ -2.26
DKK3Q9UBP4 AC097635.1-201ENST00000450678 155 ntBASIC0.94□□□□□ -2.26
DKK3Q9UBP4 AC244505.6-201ENST00000452829 130 ntBASIC0.94□□□□□ -2.26
DKK3Q9UBP4 Y_RNA.648-201ENST00000459455 110 ntBASIC0.94□□□□□ -2.26
DKK3Q9UBP4 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC0.94□□□□□ -2.26
DKK3Q9UBP4 AC010487.4-201ENST00000637027 61 ntBASIC0.94□□□□□ -2.26
DKK3Q9UBP4 SNORD114-23-201ENST00000363536 72 ntBASIC0.93□□□□□ -2.26
DKK3Q9UBP4 Y_RNA.190-201ENST00000363964 101 ntBASIC0.93□□□□□ -2.26
DKK3Q9UBP4 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.93□□□□□ -2.26
DKK3Q9UBP4 RNY1P7-201ENST00000384743 110 ntBASIC0.93□□□□□ -2.26
DKK3Q9UBP4 MIR573-201ENST00000384964 99 ntBASIC0.93□□□□□ -2.26
DKK3Q9UBP4 PSMC1P5-201ENST00000512850 177 ntBASIC0.93□□□□□ -2.26
DKK3Q9UBP4 RNA5SP330-201ENST00000517096 96 ntBASIC0.93□□□□□ -2.26
DKK3Q9UBP4 MIR373-201ENST00000362273 69 ntBASIC0.92□□□□□ -2.26
DKK3Q9UBP4 RNA5SP245-201ENST00000364239 121 ntBASIC0.92□□□□□ -2.26
DKK3Q9UBP4 RNU6-1335P-201ENST00000365426 107 ntBASIC0.92□□□□□ -2.26
DKK3Q9UBP4 RNU7-195P-201ENST00000458793 62 ntBASIC0.92□□□□□ -2.26
DKK3Q9UBP4 Y_RNA.809-201ENST00000516058 95 ntBASIC0.92□□□□□ -2.26
DKK3Q9UBP4 RNA5SP121-201ENST00000516537 101 ntBASIC0.92□□□□□ -2.26
DKK3Q9UBP4 RNA5SP476-201ENST00000516613 103 ntBASIC0.92□□□□□ -2.26
DKK3Q9UBP4 SNORA31.14-201ENST00000516728 116 ntBASIC0.92□□□□□ -2.26
DKK3Q9UBP4 AC026421.1-201ENST00000519101 163 ntBASIC0.92□□□□□ -2.26
DKK3Q9UBP4 Y_RNA.32-201ENST00000362589 110 ntBASIC0.91□□□□□ -2.26
DKK3Q9UBP4 RNA5SP117-201ENST00000365294 118 ntBASIC0.91□□□□□ -2.26
DKK3Q9UBP4 AL606490.4-201ENST00000423117 127 ntBASIC0.91□□□□□ -2.26
DKK3Q9UBP4 RNU6-135P-201ENST00000516769 101 ntBASIC0.91□□□□□ -2.26
DKK3Q9UBP4 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.91□□□□□ -2.26
DKK3Q9UBP4 RNU6-294P-201ENST00000364999 102 ntBASIC0.9□□□□□ -2.27
DKK3Q9UBP4 HAR1A.1-201ENST00000459583 118 ntBASIC0.9□□□□□ -2.27
DKK3Q9UBP4 MIR6513-201ENST00000621188 64 ntBASIC0.9□□□□□ -2.27
DKK3Q9UBP4 RNU6-716P-201ENST00000365621 103 ntBASIC0.89□□□□□ -2.27
DKK3Q9UBP4 MIR599-201ENST00000385069 95 ntBASIC0.89□□□□□ -2.27
DKK3Q9UBP4 MIR146A-201ENST00000385201 99 ntBASIC0.89□□□□□ -2.27
DKK3Q9UBP4 AL161932.1-201ENST00000437408 146 ntBASIC0.89□□□□□ -2.27
DKK3Q9UBP4 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.89□□□□□ -2.27
DKK3Q9UBP4 MIR3973-201ENST00000579824 107 ntBASIC0.89□□□□□ -2.27
DKK3Q9UBP4 AC006254.2-201ENST00000603259 279 ntBASIC0.89□□□□□ -2.27
DKK3Q9UBP4 RNU4-45P-201ENST00000365469 141 ntBASIC0.88□□□□□ -2.27
DKK3Q9UBP4 SNORD116-22-201ENST00000384430 92 ntBASIC0.88□□□□□ -2.27
DKK3Q9UBP4 Y_RNA.558-201ENST00000384685 113 ntBASIC0.88□□□□□ -2.27
DKK3Q9UBP4 SNORD99-201ENST00000408612 74 ntBASIC0.88□□□□□ -2.27
DKK3Q9UBP4 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.88□□□□□ -2.27
DKK3Q9UBP4 MIR3612-201ENST00000579753 87 ntBASIC0.88□□□□□ -2.27
DKK3Q9UBP4 AL353765.1-201ENST00000605514 183 ntBASIC0.88□□□□□ -2.27
DKK3Q9UBP4 MIR8087-201ENST00000612745 78 ntBASIC0.88□□□□□ -2.27
DKK3Q9UBP4 AC244098.3-201ENST00000424803 96 ntBASIC0.87□□□□□ -2.27
DKK3Q9UBP4 SNORD4B-201ENST00000459083 72 ntBASIC0.87□□□□□ -2.27
DKK3Q9UBP4 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC0.87□□□□□ -2.27
DKK3Q9UBP4 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.87□□□□□ -2.27
DKK3Q9UBP4 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.86□□□□□ -2.27
DKK3Q9UBP4 Y_RNA.283-201ENST00000364798 112 ntBASIC0.86□□□□□ -2.27
DKK3Q9UBP4 MIR608-201ENST00000384820 100 ntBASIC0.86□□□□□ -2.27
DKK3Q9UBP4 RNU6-466P-201ENST00000391224 103 ntBASIC0.86□□□□□ -2.27
DKK3Q9UBP4 RNU6-519P-201ENST00000410590 108 ntBASIC0.86□□□□□ -2.27
DKK3Q9UBP4 Y_RNA.609-201ENST00000410669 89 ntBASIC0.86□□□□□ -2.27
DKK3Q9UBP4 RNU7-85P-201ENST00000458851 63 ntBASIC0.86□□□□□ -2.27
DKK3Q9UBP4 snoU13.11-201ENST00000459219 104 ntBASIC0.86□□□□□ -2.27
DKK3Q9UBP4 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.86□□□□□ -2.27
DKK3Q9UBP4 RNU6-524P-201ENST00000384270 107 ntBASIC0.85□□□□□ -2.27
DKK3Q9UBP4 RNU6-1265P-201ENST00000516342 103 ntBASIC0.85□□□□□ -2.27
DKK3Q9UBP4 RNU4ATAC9P-201ENST00000517146 126 ntBASIC0.85□□□□□ -2.27
DKK3Q9UBP4 MIR4714-201ENST00000580728 77 ntBASIC0.85□□□□□ -2.27
DKK3Q9UBP4 MIR4668-201ENST00000582284 70 ntBASIC0.85□□□□□ -2.27
DKK3Q9UBP4 MIR4639-201ENST00000584938 69 ntBASIC0.85□□□□□ -2.27
DKK3Q9UBP4 RNA5SP403-201ENST00000363598 108 ntBASIC0.84□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 229.7 ms