Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 RNU6-161P-201ENST00000363051 106 ntBASIC0.05□□□□□ -2.4
LIME1Q9H400 SNORD114-9-201ENST00000364370 72 ntBASIC0.05□□□□□ -2.4
LIME1Q9H400 Y_RNA.507-201ENST00000384500 99 ntBASIC0.05□□□□□ -2.4
LIME1Q9H400 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC0.05□□□□□ -2.4
LIME1Q9H400 RNU6-1232P-201ENST00000516299 86 ntBASIC0.05□□□□□ -2.4
LIME1Q9H400 MTND5P40-201ENST00000559945 246 ntBASIC0.05□□□□□ -2.4
LIME1Q9H400 MIR4679-2-201ENST00000578358 77 ntBASIC0.05□□□□□ -2.4
LIME1Q9H400 AL162726.3-218ENST00000636401 95 ntBASIC0.05□□□□□ -2.4
LIME1Q9H400 RNA5SP214-201ENST00000363378 118 ntBASIC0.04□□□□□ -2.4
LIME1Q9H400 Y_RNA.173-201ENST00000363776 113 ntBASIC0.04□□□□□ -2.4
LIME1Q9H400 Y_RNA.247-201ENST00000364500 92 ntBASIC0.04□□□□□ -2.4
LIME1Q9H400 Y_RNA.377-201ENST00000365644 108 ntBASIC0.04□□□□□ -2.4
LIME1Q9H400 RNU6-409P-201ENST00000384114 104 ntBASIC0.04□□□□□ -2.4
LIME1Q9H400 RNU6-524P-201ENST00000384270 107 ntBASIC0.04□□□□□ -2.4
LIME1Q9H400 MIR516A2-201ENST00000384888 90 ntBASIC0.04□□□□□ -2.4
LIME1Q9H400 MIR516A1-201ENST00000385033 90 ntBASIC0.04□□□□□ -2.4
LIME1Q9H400 MIR548H2-201ENST00000408874 88 ntBASIC0.04□□□□□ -2.4
LIME1Q9H400 RNU7-13P-201ENST00000516413 62 ntBASIC0.04□□□□□ -2.4
LIME1Q9H400 RNU6-782P-201ENST00000516852 104 ntBASIC0.04□□□□□ -2.4
LIME1Q9H400 MIR4667-201ENST00000578933 66 ntBASIC0.04□□□□□ -2.4
LIME1Q9H400 MIR4743-201ENST00000584576 69 ntBASIC0.04□□□□□ -2.4
LIME1Q9H400 MIR548AD-201ENST00000584780 82 ntBASIC0.04□□□□□ -2.4
LIME1Q9H400 AC104408.1-201ENST00000605241 170 ntBASIC0.04□□□□□ -2.4
LIME1Q9H400 MIR3914-2-201ENST00000637339 95 ntBASIC0.04□□□□□ -2.4
LIME1Q9H400 AL157777.2-201ENST00000258070 137 ntBASIC0.03□□□□□ -2.4
LIME1Q9H400 RNU6-80P-201ENST00000384195 107 ntBASIC0.03□□□□□ -2.4
LIME1Q9H400 RNU6-816P-201ENST00000390914 107 ntBASIC0.03□□□□□ -2.4
LIME1Q9H400 RNU6-1268P-201ENST00000391214 107 ntBASIC0.03□□□□□ -2.4
LIME1Q9H400 RNU6-1239P-201ENST00000391310 107 ntBASIC0.03□□□□□ -2.4
LIME1Q9H400 MIR548G-201ENST00000408442 89 ntBASIC0.03□□□□□ -2.4
LIME1Q9H400 RNU7-107P-201ENST00000459121 61 ntBASIC0.03□□□□□ -2.4
LIME1Q9H400 RNU7-129P-201ENST00000516128 62 ntBASIC0.03□□□□□ -2.4
LIME1Q9H400 Y_RNA.703-201ENST00000516846 111 ntBASIC0.03□□□□□ -2.4
LIME1Q9H400 RNU6-971P-201ENST00000516920 106 ntBASIC0.03□□□□□ -2.4
LIME1Q9H400 MIR4768-201ENST00000585270 74 ntBASIC0.03□□□□□ -2.4
LIME1Q9H400 U7.6-201ENST00000610841 64 ntBASIC0.03□□□□□ -2.4
LIME1Q9H400 RNU6-509P-201ENST00000363519 107 ntBASIC0.02□□□□□ -2.41
LIME1Q9H400 RNU6-1254P-201ENST00000391266 104 ntBASIC0.02□□□□□ -2.41
LIME1Q9H400 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC0.02□□□□□ -2.41
LIME1Q9H400 MIR4290-201ENST00000583807 95 ntBASIC0.02□□□□□ -2.41
LIME1Q9H400 AL442128.1-201ENST00000615151 90 ntBASIC0.02□□□□□ -2.41
LIME1Q9H400 AL035470.1-201ENST00000622571 220 ntBASIC0.02□□□□□ -2.41
LIME1Q9H400 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC0.02□□□□□ -2.41
LIME1Q9H400 AL512310.12-203ENST00000640543 90 ntBASIC0.02□□□□□ -2.41
LIME1Q9H400 SNORD36A-201ENST00000362874 73 ntBASIC0.01□□□□□ -2.41
LIME1Q9H400 Y_RNA.155-201ENST00000363632 101 ntBASIC0.01□□□□□ -2.41
LIME1Q9H400 SNORD115-44-201ENST00000365391 82 ntBASIC0.01□□□□□ -2.41
LIME1Q9H400 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC0.01□□□□□ -2.41
LIME1Q9H400 RNU7-74P-201ENST00000459104 62 ntBASIC0.01□□□□□ -2.41
LIME1Q9H400 RNU6-1211P-201ENST00000459179 105 ntBASIC0.01□□□□□ -2.41
LIME1Q9H400 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC0.01□□□□□ -2.41
LIME1Q9H400 MIR548AG2-201ENST00000581228 64 ntBASIC0.01□□□□□ -2.41
LIME1Q9H400 RNU6-90P-201ENST00000606352 106 ntBASIC0.01□□□□□ -2.41
LIME1Q9H400 Y_RNA.57-201ENST00000362806 113 ntBASIC0□□□□□ -2.41
LIME1Q9H400 Y_RNA.218-201ENST00000364218 104 ntBASIC0□□□□□ -2.41
LIME1Q9H400 SPINT5P-201ENST00000448174 155 ntBASIC0□□□□□ -2.41
LIME1Q9H400 RNA5SP484-201ENST00000458857 111 ntBASIC0□□□□□ -2.41
LIME1Q9H400 MIR499B-201ENST00000636498 73 ntBASIC0□□□□□ -2.41
LIME1Q9H400 SNORD114-16-201ENST00000363044 70 ntBASIC-0.01□□□□□ -2.41
LIME1Q9H400 Y_RNA.525-201ENST00000384570 113 ntBASIC-0.01□□□□□ -2.41
LIME1Q9H400 MIR610-201ENST00000385139 96 ntBASIC-0.01□□□□□ -2.41
LIME1Q9H400 AC093423.1-201ENST00000440817 142 ntBASIC-0.01□□□□□ -2.41
LIME1Q9H400 RNU6-659P-201ENST00000516454 104 ntBASIC-0.01□□□□□ -2.41
LIME1Q9H400 MIR4677-201ENST00000584153 80 ntBASIC-0.01□□□□□ -2.41
LIME1Q9H400 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC-0.01□□□□□ -2.41
LIME1Q9H400 Y_RNA.125-201ENST00000363371 111 ntBASIC-0.02□□□□□ -2.41
LIME1Q9H400 Y_RNA.185-201ENST00000363894 100 ntBASIC-0.02□□□□□ -2.41
LIME1Q9H400 Y_RNA.309-201ENST00000365046 111 ntBASIC-0.02□□□□□ -2.41
LIME1Q9H400 RNU6-1062P-201ENST00000383908 107 ntBASIC-0.02□□□□□ -2.41
LIME1Q9H400 RNU6-746P-201ENST00000384112 109 ntBASIC-0.02□□□□□ -2.41
LIME1Q9H400 MIR617-201ENST00000385030 97 ntBASIC-0.02□□□□□ -2.41
LIME1Q9H400 MT-TR-201ENST00000387439 65 ntBASIC-0.02□□□□□ -2.41
LIME1Q9H400 MIR892B-201ENST00000401279 77 ntBASIC-0.02□□□□□ -2.41
LIME1Q9H400 AC006210.1-201ENST00000424882 111 ntBASIC-0.02□□□□□ -2.41
LIME1Q9H400 HMGN2P22-201ENST00000427588 175 ntBASIC-0.02□□□□□ -2.41
LIME1Q9H400 SNORD33.1-201ENST00000516213 88 ntBASIC-0.02□□□□□ -2.41
LIME1Q9H400 AC141557.1-201ENST00000540982 400 ntBASIC-0.02□□□□□ -2.41
LIME1Q9H400 MIR4694-201ENST00000578534 80 ntBASIC-0.02□□□□□ -2.41
LIME1Q9H400 MIR3133-201ENST00000583157 78 ntBASIC-0.02□□□□□ -2.41
LIME1Q9H400 MTRNR2L2-201ENST00000604882 87 ntBASIC-0.02□□□□□ -2.41
LIME1Q9H400 U6.95-201ENST00000636931 70 ntBASIC-0.02□□□□□ -2.41
LIME1Q9H400 MIR371B-201ENST00000638082 66 ntBASIC-0.02□□□□□ -2.41
LIME1Q9H400 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC-0.02□□□□□ -2.41
LIME1Q9H400 SNORD114-5-201ENST00000362928 70 ntBASIC-0.03□□□□□ -2.41
LIME1Q9H400 RNU6-1163P-201ENST00000364516 107 ntBASIC-0.03□□□□□ -2.41
LIME1Q9H400 RNU6V-201ENST00000384105 107 ntBASIC-0.03□□□□□ -2.41
LIME1Q9H400 MIR519E-201ENST00000385075 84 ntBASIC-0.03□□□□□ -2.41
LIME1Q9H400 MIR577-201ENST00000385196 96 ntBASIC-0.03□□□□□ -2.41
LIME1Q9H400 MIR643-201ENST00000385267 97 ntBASIC-0.03□□□□□ -2.41
LIME1Q9H400 RNU6-243P-201ENST00000391140 107 ntBASIC-0.03□□□□□ -2.41
LIME1Q9H400 Y_RNA.660-201ENST00000516002 120 ntBASIC-0.03□□□□□ -2.41
LIME1Q9H400 AC007012.1-201ENST00000567192 175 ntBASIC-0.03□□□□□ -2.41
LIME1Q9H400 NAMPTP3-201ENST00000569273 224 ntBASIC-0.03□□□□□ -2.41
LIME1Q9H400 TRDV1-202ENST00000621643 102 ntBASIC-0.03□□□□□ -2.41
LIME1Q9H400 RNU1-141P-201ENST00000364623 158 ntBASIC-0.04□□□□□ -2.42
LIME1Q9H400 RNY4P3-201ENST00000365254 95 ntBASIC-0.04□□□□□ -2.42
LIME1Q9H400 MIR145-201ENST00000384967 88 ntBASIC-0.04□□□□□ -2.42
LIME1Q9H400 SNORD110-201ENST00000408189 75 ntBASIC-0.04□□□□□ -2.42
LIME1Q9H400 MIR4493-201ENST00000584016 73 ntBASIC-0.04□□□□□ -2.42
LIME1Q9H400 Y_RNA.71-201ENST00000362892 104 ntBASIC-0.05□□□□□ -2.42
Retrieved 100 of 98,524 protein–RNA pairs in 229 ms