Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 RNU7-40P-201ENST00000516397 64 ntBASIC1.52□□□□□ -2.17
USHBP1Q8N6Y0 Y_RNA.697-201ENST00000516776 113 ntBASIC1.52□□□□□ -2.17
USHBP1Q8N6Y0 RNU4ATAC9P-201ENST00000517146 126 ntBASIC1.52□□□□□ -2.17
USHBP1Q8N6Y0 SNORD92-201ENST00000585078 85 ntBASIC1.52□□□□□ -2.17
USHBP1Q8N6Y0 AC022709.1-201ENST00000615967 87 ntBASIC1.52□□□□□ -2.17
USHBP1Q8N6Y0 VPS35-212ENST00000640313 141 ntTSL 5 BASIC1.52□□□□□ -2.17
USHBP1Q8N6Y0 RNU6-994P-201ENST00000410507 111 ntBASIC1.51□□□□□ -2.17
USHBP1Q8N6Y0 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC1.51□□□□□ -2.17
USHBP1Q8N6Y0 RNU6-75P-201ENST00000515944 104 ntBASIC1.51□□□□□ -2.17
USHBP1Q8N6Y0 Y_RNA.809-201ENST00000516058 95 ntBASIC1.51□□□□□ -2.17
USHBP1Q8N6Y0 AC027335.2-201ENST00000624030 375 ntBASIC1.51□□□□□ -2.17
USHBP1Q8N6Y0 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.5□□□□□ -2.17
USHBP1Q8N6Y0 RNU6-957P-201ENST00000363652 99 ntBASIC1.5□□□□□ -2.17
USHBP1Q8N6Y0 RNU6-448P-201ENST00000517052 107 ntBASIC1.5□□□□□ -2.17
USHBP1Q8N6Y0 AC138907.6-201ENST00000568401 126 ntBASIC1.5□□□□□ -2.17
USHBP1Q8N6Y0 AC138869.1-201ENST00000568623 124 ntBASIC1.5□□□□□ -2.17
USHBP1Q8N6Y0 MIR4295-201ENST00000585286 85 ntBASIC1.5□□□□□ -2.17
USHBP1Q8N6Y0 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.5□□□□□ -2.17
USHBP1Q8N6Y0 MIR1-1-201ENST00000362147 71 ntBASIC1.49□□□□□ -2.17
USHBP1Q8N6Y0 RNU6-1260P-201ENST00000362944 107 ntBASIC1.49□□□□□ -2.17
USHBP1Q8N6Y0 RNU6-624P-201ENST00000363411 107 ntBASIC1.49□□□□□ -2.17
USHBP1Q8N6Y0 MIR548U-201ENST00000390728 81 ntBASIC1.49□□□□□ -2.17
USHBP1Q8N6Y0 SNORD12-201ENST00000391002 90 ntBASIC1.49□□□□□ -2.17
USHBP1Q8N6Y0 RNU6-977P-201ENST00000516411 103 ntBASIC1.49□□□□□ -2.17
USHBP1Q8N6Y0 MIR4796-201ENST00000580742 81 ntBASIC1.49□□□□□ -2.17
USHBP1Q8N6Y0 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.49□□□□□ -2.17
USHBP1Q8N6Y0 Y_RNA.94-201ENST00000363068 106 ntBASIC1.48□□□□□ -2.17
USHBP1Q8N6Y0 SNORD26-201ENST00000384147 75 ntBASIC1.48□□□□□ -2.17
USHBP1Q8N6Y0 Y_RNA.540-201ENST00000384638 111 ntBASIC1.48□□□□□ -2.17
USHBP1Q8N6Y0 SNORA18.5-201ENST00000516616 101 ntBASIC1.48□□□□□ -2.17
USHBP1Q8N6Y0 MIR4804-201ENST00000581683 73 ntBASIC1.48□□□□□ -2.17
USHBP1Q8N6Y0 MIR7974-201ENST00000615835 79 ntBASIC1.48□□□□□ -2.17
USHBP1Q8N6Y0 MIR100-201ENST00000385259 80 ntBASIC1.47□□□□□ -2.17
USHBP1Q8N6Y0 RNU6-129P-201ENST00000391022 107 ntBASIC1.47□□□□□ -2.17
USHBP1Q8N6Y0 MIR548J-201ENST00000408833 112 ntBASIC1.47□□□□□ -2.17
USHBP1Q8N6Y0 RNU7-56P-201ENST00000458744 62 ntBASIC1.47□□□□□ -2.17
USHBP1Q8N6Y0 RNU7-102P-201ENST00000458948 62 ntBASIC1.47□□□□□ -2.17
USHBP1Q8N6Y0 AC087343.1-201ENST00000477341 475 ntBASIC1.47□□□□□ -2.17
USHBP1Q8N6Y0 AC019288.1-201ENST00000557918 224 ntBASIC1.47□□□□□ -2.17
USHBP1Q8N6Y0 MIR3064-201ENST00000581130 66 ntBASIC1.47□□□□□ -2.17
USHBP1Q8N6Y0 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
USHBP1Q8N6Y0 RNU6-369P-201ENST00000362515 102 ntBASIC1.46□□□□□ -2.18
USHBP1Q8N6Y0 RNU6-132P-201ENST00000383863 107 ntBASIC1.46□□□□□ -2.18
USHBP1Q8N6Y0 RNU6-535P-201ENST00000384722 107 ntBASIC1.46□□□□□ -2.18
USHBP1Q8N6Y0 MIR222-201ENST00000384992 110 ntBASIC1.46□□□□□ -2.18
USHBP1Q8N6Y0 RNA5SP292-201ENST00000390974 118 ntBASIC1.46□□□□□ -2.18
USHBP1Q8N6Y0 RNU6ATAC33P-201ENST00000408647 126 ntBASIC1.46□□□□□ -2.18
USHBP1Q8N6Y0 RNU6-955P-201ENST00000410497 104 ntBASIC1.46□□□□□ -2.18
USHBP1Q8N6Y0 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.46□□□□□ -2.18
USHBP1Q8N6Y0 AC104996.3-201ENST00000590718 94 ntBASIC1.46□□□□□ -2.18
USHBP1Q8N6Y0 MIR4662A-201ENST00000637499 67 ntBASIC1.46□□□□□ -2.18
USHBP1Q8N6Y0 Y_RNA.491-201ENST00000384417 107 ntBASIC1.45□□□□□ -2.18
USHBP1Q8N6Y0 RNU1-119P-201ENST00000391122 165 ntBASIC1.45□□□□□ -2.18
USHBP1Q8N6Y0 AC097635.1-201ENST00000450678 155 ntBASIC1.45□□□□□ -2.18
USHBP1Q8N6Y0 AC067940.1-201ENST00000458411 300 ntBASIC1.45□□□□□ -2.18
USHBP1Q8N6Y0 RNA5SP436-201ENST00000516020 115 ntBASIC1.45□□□□□ -2.18
USHBP1Q8N6Y0 MIR4712-201ENST00000583750 82 ntBASIC1.45□□□□□ -2.18
USHBP1Q8N6Y0 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.44□□□□□ -2.18
USHBP1Q8N6Y0 RNU6-315P-201ENST00000362666 107 ntBASIC1.44□□□□□ -2.18
USHBP1Q8N6Y0 RNU6-291P-201ENST00000384720 107 ntBASIC1.44□□□□□ -2.18
USHBP1Q8N6Y0 MIR599-201ENST00000385069 95 ntBASIC1.44□□□□□ -2.18
USHBP1Q8N6Y0 AC002429.1-201ENST00000437672 148 ntBASIC1.44□□□□□ -2.18
USHBP1Q8N6Y0 RPS29P23-201ENST00000458635 123 ntBASIC1.44□□□□□ -2.18
USHBP1Q8N6Y0 MIR6788-201ENST00000618842 66 ntBASIC1.44□□□□□ -2.18
USHBP1Q8N6Y0 TRDV1-202ENST00000621643 102 ntBASIC1.44□□□□□ -2.18
USHBP1Q8N6Y0 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.43□□□□□ -2.18
USHBP1Q8N6Y0 MIRLET7F1-201ENST00000362202 87 ntBASIC1.43□□□□□ -2.18
USHBP1Q8N6Y0 MIR373-201ENST00000362273 69 ntBASIC1.43□□□□□ -2.18
USHBP1Q8N6Y0 RNA5SP327-201ENST00000362494 101 ntBASIC1.43□□□□□ -2.18
USHBP1Q8N6Y0 AL450471.1-201ENST00000447509 127 ntBASIC1.43□□□□□ -2.18
USHBP1Q8N6Y0 RNU6-557P-201ENST00000516842 110 ntBASIC1.43□□□□□ -2.18
USHBP1Q8N6Y0 AC008608.1-201ENST00000603910 127 ntBASIC1.43□□□□□ -2.18
USHBP1Q8N6Y0 MIR6515-201ENST00000619843 57 ntBASIC1.43□□□□□ -2.18
USHBP1Q8N6Y0 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.42□□□□□ -2.18
USHBP1Q8N6Y0 SNORA63.2-201ENST00000362603 126 ntBASIC1.42□□□□□ -2.18
USHBP1Q8N6Y0 RNA5SP245-201ENST00000364239 121 ntBASIC1.42□□□□□ -2.18
USHBP1Q8N6Y0 MIR520F-201ENST00000384824 87 ntBASIC1.42□□□□□ -2.18
USHBP1Q8N6Y0 MIR151B-201ENST00000584249 96 ntBASIC1.42□□□□□ -2.18
USHBP1Q8N6Y0 SNORD114-21-201ENST00000606412 72 ntBASIC1.42□□□□□ -2.18
USHBP1Q8N6Y0 Y_RNA.221-201ENST00000364248 96 ntBASIC1.41□□□□□ -2.18
USHBP1Q8N6Y0 Y_RNA.239-201ENST00000364444 113 ntBASIC1.41□□□□□ -2.18
USHBP1Q8N6Y0 SNORA25-201ENST00000384384 134 ntBASIC1.41□□□□□ -2.18
USHBP1Q8N6Y0 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC1.41□□□□□ -2.18
USHBP1Q8N6Y0 MIR1827-201ENST00000408549 66 ntBASIC1.41□□□□□ -2.18
USHBP1Q8N6Y0 PVT1_3.1-201ENST00000620853 95 ntBASIC1.41□□□□□ -2.18
USHBP1Q8N6Y0 RNU6-664P-201ENST00000362381 107 ntBASIC1.4□□□□□ -2.19
USHBP1Q8N6Y0 RNU6-478P-201ENST00000363904 110 ntBASIC1.4□□□□□ -2.19
USHBP1Q8N6Y0 AL606490.4-201ENST00000423117 127 ntBASIC1.4□□□□□ -2.19
USHBP1Q8N6Y0 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.4□□□□□ -2.19
USHBP1Q8N6Y0 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.4□□□□□ -2.19
USHBP1Q8N6Y0 RNU6-1094P-201ENST00000362416 104 ntBASIC1.39□□□□□ -2.19
USHBP1Q8N6Y0 RNU6-776P-201ENST00000364403 104 ntBASIC1.39□□□□□ -2.19
USHBP1Q8N6Y0 RNU6-686P-201ENST00000364839 107 ntBASIC1.39□□□□□ -2.19
USHBP1Q8N6Y0 RNU6-1022P-201ENST00000365049 104 ntBASIC1.39□□□□□ -2.19
USHBP1Q8N6Y0 RNU6-380P-201ENST00000410207 107 ntBASIC1.39□□□□□ -2.19
USHBP1Q8N6Y0 AC244505.6-201ENST00000452829 130 ntBASIC1.39□□□□□ -2.19
USHBP1Q8N6Y0 FGF7P7-201ENST00000514120 227 ntBASIC1.39□□□□□ -2.19
USHBP1Q8N6Y0 Y_RNA.660-201ENST00000516002 120 ntBASIC1.39□□□□□ -2.19
USHBP1Q8N6Y0 MIR3973-201ENST00000579824 107 ntBASIC1.39□□□□□ -2.19
USHBP1Q8N6Y0 MIR4696-201ENST00000581431 70 ntBASIC1.39□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 214.5 ms