Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 RNU6-554P-201ENST00000410466 106 ntBASIC0.43□□□□□ -2.34
CCDC28AQ8IWP9 MIR4452-201ENST00000583004 71 ntBASIC0.43□□□□□ -2.34
CCDC28AQ8IWP9 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.42□□□□□ -2.34
CCDC28AQ8IWP9 AC090625.1-201ENST00000357130 210 ntBASIC0.42□□□□□ -2.34
CCDC28AQ8IWP9 AC069271.1-201ENST00000445577 156 ntBASIC0.42□□□□□ -2.34
CCDC28AQ8IWP9 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC0.42□□□□□ -2.34
CCDC28AQ8IWP9 RPS29P1-201ENST00000465274 159 ntBASIC0.42□□□□□ -2.34
CCDC28AQ8IWP9 SCARNA23-201ENST00000516060 130 ntBASIC0.42□□□□□ -2.34
CCDC28AQ8IWP9 uc_338.28-201ENST00000612082 187 ntBASIC0.42□□□□□ -2.34
CCDC28AQ8IWP9 MIR8070-201ENST00000616510 88 ntBASIC0.42□□□□□ -2.34
CCDC28AQ8IWP9 SNORD115-44-201ENST00000365391 82 ntBASIC0.41□□□□□ -2.34
CCDC28AQ8IWP9 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.41□□□□□ -2.34
CCDC28AQ8IWP9 RNU6-466P-201ENST00000391224 103 ntBASIC0.41□□□□□ -2.34
CCDC28AQ8IWP9 SNORA19.1-201ENST00000410656 129 ntBASIC0.41□□□□□ -2.34
CCDC28AQ8IWP9 AL162376.1-201ENST00000624117 175 ntBASIC0.41□□□□□ -2.34
CCDC28AQ8IWP9 RNA5SP347-201ENST00000362445 119 ntBASIC0.4□□□□□ -2.35
CCDC28AQ8IWP9 SNORA51.5-201ENST00000384126 131 ntBASIC0.4□□□□□ -2.35
CCDC28AQ8IWP9 RNU6-813P-201ENST00000384691 107 ntBASIC0.4□□□□□ -2.35
CCDC28AQ8IWP9 RNU7-74P-201ENST00000459104 62 ntBASIC0.4□□□□□ -2.35
CCDC28AQ8IWP9 MIR3920-201ENST00000581751 86 ntBASIC0.4□□□□□ -2.35
CCDC28AQ8IWP9 TRDV1-202ENST00000621643 102 ntBASIC0.4□□□□□ -2.35
CCDC28AQ8IWP9 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.4□□□□□ -2.35
CCDC28AQ8IWP9 MIR103A1-201ENST00000362165 78 ntBASIC0.39□□□□□ -2.35
CCDC28AQ8IWP9 RNU6-848P-201ENST00000515948 107 ntBASIC0.39□□□□□ -2.35
CCDC28AQ8IWP9 RNU6-617P-201ENST00000516147 107 ntBASIC0.39□□□□□ -2.35
CCDC28AQ8IWP9 RNU6-473P-201ENST00000516164 107 ntBASIC0.39□□□□□ -2.35
CCDC28AQ8IWP9 RNU6-1049P-201ENST00000516414 107 ntBASIC0.39□□□□□ -2.35
CCDC28AQ8IWP9 AL078603.1-201ENST00000603824 313 ntBASIC0.39□□□□□ -2.35
CCDC28AQ8IWP9 MIR6788-201ENST00000618842 66 ntBASIC0.39□□□□□ -2.35
CCDC28AQ8IWP9 MIR5087-201ENST00000635826 76 ntBASIC0.39□□□□□ -2.35
CCDC28AQ8IWP9 Y_RNA.96-201ENST00000363092 109 ntBASIC0.38□□□□□ -2.35
CCDC28AQ8IWP9 RNU6-1327P-201ENST00000365302 105 ntBASIC0.38□□□□□ -2.35
CCDC28AQ8IWP9 Y_RNA.467-201ENST00000384297 102 ntBASIC0.38□□□□□ -2.35
CCDC28AQ8IWP9 MIR499A-201ENST00000384903 122 ntBASIC0.38□□□□□ -2.35
CCDC28AQ8IWP9 RNY4P18-201ENST00000391107 89 ntBASIC0.38□□□□□ -2.35
CCDC28AQ8IWP9 RNU6-795P-201ENST00000516323 103 ntBASIC0.38□□□□□ -2.35
CCDC28AQ8IWP9 MIR5000-201ENST00000577717 103 ntBASIC0.38□□□□□ -2.35
CCDC28AQ8IWP9 MIR4777-201ENST00000583710 86 ntBASIC0.38□□□□□ -2.35
CCDC28AQ8IWP9 MIR151B-201ENST00000584249 96 ntBASIC0.38□□□□□ -2.35
CCDC28AQ8IWP9 AC012531.4-201ENST00000616509 177 ntBASIC0.38□□□□□ -2.35
CCDC28AQ8IWP9 AC025521.1-201ENST00000621624 286 ntBASIC0.38□□□□□ -2.35
CCDC28AQ8IWP9 RNU6-756P-201ENST00000383997 107 ntBASIC0.37□□□□□ -2.35
CCDC28AQ8IWP9 MIR590-201ENST00000385008 97 ntBASIC0.37□□□□□ -2.35
CCDC28AQ8IWP9 MIR548J-201ENST00000408833 112 ntBASIC0.37□□□□□ -2.35
CCDC28AQ8IWP9 AC114737.2-201ENST00000421583 173 ntBASIC0.37□□□□□ -2.35
CCDC28AQ8IWP9 Y_RNA.648-201ENST00000459455 110 ntBASIC0.37□□□□□ -2.35
CCDC28AQ8IWP9 MIR4714-201ENST00000580728 77 ntBASIC0.37□□□□□ -2.35
CCDC28AQ8IWP9 AC073869.9-201ENST00000641610 120 ntBASIC0.37□□□□□ -2.35
CCDC28AQ8IWP9 RNU6-766P-201ENST00000362478 107 ntBASIC0.36□□□□□ -2.35
CCDC28AQ8IWP9 RNU6-509P-201ENST00000363519 107 ntBASIC0.36□□□□□ -2.35
CCDC28AQ8IWP9 RNU6-957P-201ENST00000363652 99 ntBASIC0.36□□□□□ -2.35
CCDC28AQ8IWP9 Y_RNA.224-201ENST00000364308 111 ntBASIC0.36□□□□□ -2.35
CCDC28AQ8IWP9 Y_RNA.423-201ENST00000384057 113 ntBASIC0.36□□□□□ -2.35
CCDC28AQ8IWP9 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.36□□□□□ -2.35
CCDC28AQ8IWP9 Y_RNA.596-201ENST00000410462 109 ntBASIC0.36□□□□□ -2.35
CCDC28AQ8IWP9 AC103810.7-201ENST00000607821 91 ntBASIC0.36□□□□□ -2.35
CCDC28AQ8IWP9 Y_RNA.818-201ENST00000618813 71 ntBASIC0.36□□□□□ -2.35
CCDC28AQ8IWP9 RNA5SP62-201ENST00000363457 110 ntBASIC0.35□□□□□ -2.35
CCDC28AQ8IWP9 Y_RNA.283-201ENST00000364798 112 ntBASIC0.35□□□□□ -2.35
CCDC28AQ8IWP9 RNU6-215P-201ENST00000365169 102 ntBASIC0.35□□□□□ -2.35
CCDC28AQ8IWP9 SNORA50A-201ENST00000384225 134 ntBASIC0.35□□□□□ -2.35
CCDC28AQ8IWP9 RNU6-269P-201ENST00000391077 97 ntBASIC0.35□□□□□ -2.35
CCDC28AQ8IWP9 AL161932.1-201ENST00000437408 146 ntBASIC0.35□□□□□ -2.35
CCDC28AQ8IWP9 AL031737.1-201ENST00000450125 223 ntBASIC0.35□□□□□ -2.35
CCDC28AQ8IWP9 RNA5SP220-201ENST00000516298 104 ntBASIC0.35□□□□□ -2.35
CCDC28AQ8IWP9 RNU6-919P-201ENST00000516731 104 ntBASIC0.35□□□□□ -2.35
CCDC28AQ8IWP9 Y_RNA.705-201ENST00000516862 110 ntBASIC0.35□□□□□ -2.35
CCDC28AQ8IWP9 RNU6-537P-201ENST00000517277 103 ntBASIC0.35□□□□□ -2.35
CCDC28AQ8IWP9 AL513043.2-201ENST00000573941 143 ntBASIC0.35□□□□□ -2.35
CCDC28AQ8IWP9 MIR548Z-201ENST00000584743 97 ntBASIC0.35□□□□□ -2.35
CCDC28AQ8IWP9 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC0.35□□□□□ -2.35
CCDC28AQ8IWP9 SNORA2A-201ENST00000383885 135 ntBASIC0.34□□□□□ -2.36
CCDC28AQ8IWP9 RNU6-644P-201ENST00000391155 98 ntBASIC0.34□□□□□ -2.36
CCDC28AQ8IWP9 snoU13.11-201ENST00000459219 104 ntBASIC0.34□□□□□ -2.36
CCDC28AQ8IWP9 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC0.34□□□□□ -2.36
CCDC28AQ8IWP9 RNU6-229P-201ENST00000516614 102 ntBASIC0.34□□□□□ -2.36
CCDC28AQ8IWP9 MIR4752-201ENST00000579672 72 ntBASIC0.34□□□□□ -2.36
CCDC28AQ8IWP9 MIR6755-201ENST00000619993 66 ntBASIC0.34□□□□□ -2.36
CCDC28AQ8IWP9 Y_RNA.107-201ENST00000363190 121 ntBASIC0.33□□□□□ -2.36
CCDC28AQ8IWP9 RNA5SP499-201ENST00000363982 119 ntBASIC0.33□□□□□ -2.36
CCDC28AQ8IWP9 SNORD20-201ENST00000384550 80 ntBASIC0.33□□□□□ -2.36
CCDC28AQ8IWP9 RNU6-972P-201ENST00000391208 107 ntBASIC0.33□□□□□ -2.36
CCDC28AQ8IWP9 AC073261.1-201ENST00000429409 121 ntBASIC0.33□□□□□ -2.36
CCDC28AQ8IWP9 RNU6-1223P-201ENST00000517124 104 ntBASIC0.33□□□□□ -2.36
CCDC28AQ8IWP9 RNU4ATAC9P-201ENST00000517146 126 ntBASIC0.33□□□□□ -2.36
CCDC28AQ8IWP9 U6.100-201ENST00000636230 99 ntBASIC0.33□□□□□ -2.36
CCDC28AQ8IWP9 RNU6-755P-201ENST00000364400 103 ntBASIC0.32□□□□□ -2.36
CCDC28AQ8IWP9 Y_RNA.544-201ENST00000384650 113 ntBASIC0.32□□□□□ -2.36
CCDC28AQ8IWP9 MIR617-201ENST00000385030 97 ntBASIC0.32□□□□□ -2.36
CCDC28AQ8IWP9 AC108740.1-201ENST00000498629 225 ntBASIC0.32□□□□□ -2.36
CCDC28AQ8IWP9 RNA5SP134-201ENST00000516492 96 ntBASIC0.32□□□□□ -2.36
CCDC28AQ8IWP9 MIR5706-201ENST00000579841 80 ntBASIC0.32□□□□□ -2.36
CCDC28AQ8IWP9 MIR6734-201ENST00000621166 68 ntBASIC0.32□□□□□ -2.36
CCDC28AQ8IWP9 Y_RNA.93-201ENST00000363066 109 ntBASIC0.31□□□□□ -2.36
CCDC28AQ8IWP9 Y_RNA.508-201ENST00000384502 114 ntBASIC0.31□□□□□ -2.36
CCDC28AQ8IWP9 RNU6-887P-201ENST00000410660 100 ntBASIC0.31□□□□□ -2.36
CCDC28AQ8IWP9 MTRNR2L2-201ENST00000604882 87 ntBASIC0.31□□□□□ -2.36
CCDC28AQ8IWP9 RNU1-29P-201ENST00000606574 126 ntBASIC0.31□□□□□ -2.36
CCDC28AQ8IWP9 SNORA9.1-201ENST00000362412 131 ntBASIC0.3□□□□□ -2.36
CCDC28AQ8IWP9 Y_RNA.466-201ENST00000384294 113 ntBASIC0.3□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 199.6 ms