Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 RNU7-106P-201ENST00000459514 67 ntBASIC0.28□□□□□ -2.36
PDLIM3Q53GG5 Y_RNA.809-201ENST00000516058 95 ntBASIC0.28□□□□□ -2.36
PDLIM3Q53GG5 SNORD33.1-201ENST00000516213 88 ntBASIC0.28□□□□□ -2.36
PDLIM3Q53GG5 RNU6-815P-201ENST00000384080 113 ntBASIC0.27□□□□□ -2.37
PDLIM3Q53GG5 RNU6-524P-201ENST00000384270 107 ntBASIC0.27□□□□□ -2.37
PDLIM3Q53GG5 MIR548I2-201ENST00000408348 149 ntBASIC0.27□□□□□ -2.37
PDLIM3Q53GG5 RNU6ATAC41P-201ENST00000408600 126 ntBASIC0.27□□□□□ -2.37
PDLIM3Q53GG5 snoU13.11-201ENST00000459219 104 ntBASIC0.27□□□□□ -2.37
PDLIM3Q53GG5 AC007012.1-201ENST00000567192 175 ntBASIC0.27□□□□□ -2.37
PDLIM3Q53GG5 AL035470.1-201ENST00000622571 220 ntBASIC0.27□□□□□ -2.37
PDLIM3Q53GG5 RNU6-571P-201ENST00000384128 107 ntBASIC0.26□□□□□ -2.37
PDLIM3Q53GG5 MIR604-201ENST00000384880 94 ntBASIC0.26□□□□□ -2.37
PDLIM3Q53GG5 MIR548A3-201ENST00000385297 97 ntBASIC0.26□□□□□ -2.37
PDLIM3Q53GG5 AL353813.1-201ENST00000440700 253 ntBASIC0.26□□□□□ -2.37
PDLIM3Q53GG5 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC0.26□□□□□ -2.37
PDLIM3Q53GG5 MIR4493-201ENST00000584016 73 ntBASIC0.26□□□□□ -2.37
PDLIM3Q53GG5 AC108676.2-201ENST00000605225 163 ntBASIC0.26□□□□□ -2.37
PDLIM3Q53GG5 MIR6828-201ENST00000636181 60 ntBASIC0.26□□□□□ -2.37
PDLIM3Q53GG5 AL162726.3-218ENST00000636401 95 ntBASIC0.26□□□□□ -2.37
PDLIM3Q53GG5 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC0.26□□□□□ -2.37
PDLIM3Q53GG5 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.26□□□□□ -2.37
PDLIM3Q53GG5 Y_RNA.342-201ENST00000365352 113 ntBASIC0.25□□□□□ -2.37
PDLIM3Q53GG5 AC097635.1-201ENST00000450678 155 ntBASIC0.25□□□□□ -2.37
PDLIM3Q53GG5 MIR3914-2-201ENST00000637339 95 ntBASIC0.25□□□□□ -2.37
PDLIM3Q53GG5 RNU6-1313P-201ENST00000362622 102 ntBASIC0.24□□□□□ -2.37
PDLIM3Q53GG5 Y_RNA.57-201ENST00000362806 113 ntBASIC0.24□□□□□ -2.37
PDLIM3Q53GG5 SNORD114-31-201ENST00000363219 75 ntBASIC0.24□□□□□ -2.37
PDLIM3Q53GG5 RNU6-726P-201ENST00000364680 107 ntBASIC0.24□□□□□ -2.37
PDLIM3Q53GG5 RNU6-1327P-201ENST00000365302 105 ntBASIC0.24□□□□□ -2.37
PDLIM3Q53GG5 MIR548G-201ENST00000408442 89 ntBASIC0.24□□□□□ -2.37
PDLIM3Q53GG5 RNU6-1333P-201ENST00000516162 93 ntBASIC0.24□□□□□ -2.37
PDLIM3Q53GG5 RNU6-659P-201ENST00000516454 104 ntBASIC0.24□□□□□ -2.37
PDLIM3Q53GG5 RNU6-90P-201ENST00000606352 106 ntBASIC0.24□□□□□ -2.37
PDLIM3Q53GG5 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.24□□□□□ -2.37
PDLIM3Q53GG5 Y_RNA.261-201ENST00000364631 102 ntBASIC0.23□□□□□ -2.37
PDLIM3Q53GG5 AC104692.1-201ENST00000472406 90 ntBASIC0.23□□□□□ -2.37
PDLIM3Q53GG5 AP001180.6-201ENST00000584918 159 ntBASIC0.23□□□□□ -2.37
PDLIM3Q53GG5 MIR6755-201ENST00000619993 66 ntBASIC0.23□□□□□ -2.37
PDLIM3Q53GG5 RNA5SP403-201ENST00000363598 108 ntBASIC0.22□□□□□ -2.37
PDLIM3Q53GG5 SNORD38.1-201ENST00000363863 68 ntBASIC0.22□□□□□ -2.37
PDLIM3Q53GG5 MIR760-201ENST00000390220 80 ntBASIC0.22□□□□□ -2.37
PDLIM3Q53GG5 Y_RNA.610-201ENST00000410681 103 ntBASIC0.22□□□□□ -2.37
PDLIM3Q53GG5 AL161932.1-201ENST00000437408 146 ntBASIC0.22□□□□□ -2.37
PDLIM3Q53GG5 SNORD57-201ENST00000448188 72 ntBASIC0.22□□□□□ -2.37
PDLIM3Q53GG5 RNU6-1006P-201ENST00000516998 103 ntBASIC0.22□□□□□ -2.37
PDLIM3Q53GG5 AL442128.1-201ENST00000615151 90 ntBASIC0.22□□□□□ -2.37
PDLIM3Q53GG5 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.22□□□□□ -2.37
PDLIM3Q53GG5 Y_RNA.35-201ENST00000362601 101 ntBASIC0.21□□□□□ -2.38
PDLIM3Q53GG5 RNU6-1099P-201ENST00000363533 107 ntBASIC0.21□□□□□ -2.38
PDLIM3Q53GG5 Y_RNA.309-201ENST00000365046 111 ntBASIC0.21□□□□□ -2.38
PDLIM3Q53GG5 SNORD50.2-201ENST00000365465 70 ntBASIC0.21□□□□□ -2.38
PDLIM3Q53GG5 SNORD116-14-201ENST00000383894 92 ntBASIC0.21□□□□□ -2.38
PDLIM3Q53GG5 SNORD116-17-201ENST00000383929 92 ntBASIC0.21□□□□□ -2.38
PDLIM3Q53GG5 RNU6-1126P-201ENST00000384002 107 ntBASIC0.21□□□□□ -2.38
PDLIM3Q53GG5 RNU6-1201P-201ENST00000384227 107 ntBASIC0.21□□□□□ -2.38
PDLIM3Q53GG5 SNORD116-15-201ENST00000384445 92 ntBASIC0.21□□□□□ -2.38
PDLIM3Q53GG5 SNORD116-19-201ENST00000384729 92 ntBASIC0.21□□□□□ -2.38
PDLIM3Q53GG5 RPL39P34-201ENST00000477141 156 ntBASIC0.21□□□□□ -2.38
PDLIM3Q53GG5 RNU6-1232P-201ENST00000516299 86 ntBASIC0.21□□□□□ -2.38
PDLIM3Q53GG5 RNU7-13P-201ENST00000516413 62 ntBASIC0.21□□□□□ -2.38
PDLIM3Q53GG5 MIR499B-201ENST00000636498 73 ntBASIC0.21□□□□□ -2.38
PDLIM3Q53GG5 SNORD95.1-201ENST00000364099 68 ntBASIC0.2□□□□□ -2.38
PDLIM3Q53GG5 RNU6-269P-201ENST00000391077 97 ntBASIC0.2□□□□□ -2.38
PDLIM3Q53GG5 RNU6-243P-201ENST00000391140 107 ntBASIC0.2□□□□□ -2.38
PDLIM3Q53GG5 Y_RNA.659-201ENST00000515994 113 ntBASIC0.2□□□□□ -2.38
PDLIM3Q53GG5 Y_RNA.712-201ENST00000517011 92 ntBASIC0.2□□□□□ -2.38
PDLIM3Q53GG5 AC068339.1-201ENST00000526965 141 ntBASIC0.2□□□□□ -2.38
PDLIM3Q53GG5 MIR5093-201ENST00000583199 100 ntBASIC0.2□□□□□ -2.38
PDLIM3Q53GG5 U6.95-201ENST00000636931 70 ntBASIC0.2□□□□□ -2.38
PDLIM3Q53GG5 MIR643-201ENST00000385267 97 ntBASIC0.19□□□□□ -2.38
PDLIM3Q53GG5 RNU6-1254P-201ENST00000391266 104 ntBASIC0.19□□□□□ -2.38
PDLIM3Q53GG5 SNX3P1X-201ENST00000414887 175 ntBASIC0.19□□□□□ -2.38
PDLIM3Q53GG5 AC108740.1-201ENST00000498629 225 ntBASIC0.19□□□□□ -2.38
PDLIM3Q53GG5 RNU6-1018P-201ENST00000516577 106 ntBASIC0.19□□□□□ -2.38
PDLIM3Q53GG5 AC069113.3-201ENST00000521019 150 ntBASIC0.19□□□□□ -2.38
PDLIM3Q53GG5 MIR4768-201ENST00000585270 74 ntBASIC0.19□□□□□ -2.38
PDLIM3Q53GG5 AL670379.3-201ENST00000605040 251 ntBASIC0.19□□□□□ -2.38
PDLIM3Q53GG5 SNORA70.25-201ENST00000612741 95 ntBASIC0.19□□□□□ -2.38
PDLIM3Q53GG5 RNU6-1260P-201ENST00000362944 107 ntBASIC0.18□□□□□ -2.38
PDLIM3Q53GG5 RNU6-959P-201ENST00000384671 107 ntBASIC0.18□□□□□ -2.38
PDLIM3Q53GG5 MIR577-201ENST00000385196 96 ntBASIC0.18□□□□□ -2.38
PDLIM3Q53GG5 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC0.18□□□□□ -2.38
PDLIM3Q53GG5 AL365222.1-201ENST00000614661 98 ntBASIC0.18□□□□□ -2.38
PDLIM3Q53GG5 MIR371B-201ENST00000638082 66 ntBASIC0.18□□□□□ -2.38
PDLIM3Q53GG5 U8.6-201ENST00000364939 135 ntBASIC0.17□□□□□ -2.38
PDLIM3Q53GG5 Y_RNA.323-201ENST00000365157 109 ntBASIC0.17□□□□□ -2.38
PDLIM3Q53GG5 TMSB4XP3-201ENST00000445144 114 ntBASIC0.17□□□□□ -2.38
PDLIM3Q53GG5 RNU6-1265P-201ENST00000516342 103 ntBASIC0.17□□□□□ -2.38
PDLIM3Q53GG5 Y_RNA.163-201ENST00000363702 113 ntBASIC0.16□□□□□ -2.38
PDLIM3Q53GG5 Y_RNA.173-201ENST00000363776 113 ntBASIC0.16□□□□□ -2.38
PDLIM3Q53GG5 RNU6-863P-201ENST00000515989 104 ntBASIC0.16□□□□□ -2.38
PDLIM3Q53GG5 NAMPTP3-201ENST00000569273 224 ntBASIC0.16□□□□□ -2.38
PDLIM3Q53GG5 RNU6-86P-201ENST00000606534 107 ntBASIC0.16□□□□□ -2.38
PDLIM3Q53GG5 AL162376.1-201ENST00000624117 175 ntBASIC0.16□□□□□ -2.38
PDLIM3Q53GG5 SNORD116-21-201ENST00000384507 92 ntBASIC0.15□□□□□ -2.39
PDLIM3Q53GG5 MIR519A1-201ENST00000385257 85 ntBASIC0.15□□□□□ -2.39
PDLIM3Q53GG5 AC109327.2-201ENST00000448339 378 ntBASIC0.15□□□□□ -2.39
PDLIM3Q53GG5 MIR4679-2-201ENST00000578358 77 ntBASIC0.15□□□□□ -2.39
PDLIM3Q53GG5 MIR5009-201ENST00000578736 100 ntBASIC0.15□□□□□ -2.39
PDLIM3Q53GG5 MIR3920-201ENST00000581751 86 ntBASIC0.15□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 168.5 ms