Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 RNU6-478P-201ENST00000363904 110 ntBASIC1.25□□□□□ -2.21
MSX2P35548 RNA5SP245-201ENST00000364239 121 ntBASIC1.25□□□□□ -2.21
MSX2P35548 SNORA25.8-201ENST00000364831 128 ntBASIC1.25□□□□□ -2.21
MSX2P35548 Y_RNA.355-201ENST00000365462 98 ntBASIC1.25□□□□□ -2.21
MSX2P35548 MIR618-201ENST00000385287 98 ntBASIC1.25□□□□□ -2.21
MSX2P35548 AC002429.1-201ENST00000437672 148 ntBASIC1.25□□□□□ -2.21
MSX2P35548 SNORA18.5-201ENST00000516616 101 ntBASIC1.25□□□□□ -2.21
MSX2P35548 TRDV1-202ENST00000621643 102 ntBASIC1.25□□□□□ -2.21
MSX2P35548 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
MSX2P35548 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC1.24□□□□□ -2.21
MSX2P35548 MIRLET7F1-201ENST00000362202 87 ntBASIC1.24□□□□□ -2.21
MSX2P35548 Y_RNA.327-201ENST00000365201 102 ntBASIC1.24□□□□□ -2.21
MSX2P35548 RNU6-535P-201ENST00000384722 107 ntBASIC1.24□□□□□ -2.21
MSX2P35548 MIR518E-201ENST00000385252 88 ntBASIC1.24□□□□□ -2.21
MSX2P35548 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.24□□□□□ -2.21
MSX2P35548 MIR1827-201ENST00000408549 66 ntBASIC1.24□□□□□ -2.21
MSX2P35548 RNU6-977P-201ENST00000516411 103 ntBASIC1.24□□□□□ -2.21
MSX2P35548 RNU1-92P-201ENST00000517017 135 ntBASIC1.24□□□□□ -2.21
MSX2P35548 AC138907.6-201ENST00000568401 126 ntBASIC1.24□□□□□ -2.21
MSX2P35548 AC138869.1-201ENST00000568623 124 ntBASIC1.24□□□□□ -2.21
MSX2P35548 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.24□□□□□ -2.21
MSX2P35548 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.24□□□□□ -2.21
MSX2P35548 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.23□□□□□ -2.21
MSX2P35548 RNU6-129P-201ENST00000391022 107 ntBASIC1.23□□□□□ -2.21
MSX2P35548 AL450471.1-201ENST00000447509 127 ntBASIC1.23□□□□□ -2.21
MSX2P35548 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.23□□□□□ -2.21
MSX2P35548 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.23□□□□□ -2.21
MSX2P35548 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.23□□□□□ -2.21
MSX2P35548 MIR1-1-201ENST00000362147 71 ntBASIC1.22□□□□□ -2.21
MSX2P35548 RNU6-315P-201ENST00000362666 107 ntBASIC1.22□□□□□ -2.21
MSX2P35548 Y_RNA.491-201ENST00000384417 107 ntBASIC1.22□□□□□ -2.21
MSX2P35548 RNU6-939P-201ENST00000384634 107 ntBASIC1.22□□□□□ -2.21
MSX2P35548 MIR599-201ENST00000385069 95 ntBASIC1.22□□□□□ -2.21
MSX2P35548 MIR100-201ENST00000385259 80 ntBASIC1.22□□□□□ -2.21
MSX2P35548 MIR548U-201ENST00000390728 81 ntBASIC1.22□□□□□ -2.21
MSX2P35548 RNU6ATAC33P-201ENST00000408647 126 ntBASIC1.22□□□□□ -2.21
MSX2P35548 RNA5SP404-201ENST00000517118 132 ntBASIC1.22□□□□□ -2.21
MSX2P35548 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.22□□□□□ -2.21
MSX2P35548 SNORA63.2-201ENST00000362603 126 ntBASIC1.21□□□□□ -2.22
MSX2P35548 Y_RNA.221-201ENST00000364248 96 ntBASIC1.21□□□□□ -2.22
MSX2P35548 Y_RNA.224-201ENST00000364308 111 ntBASIC1.21□□□□□ -2.22
MSX2P35548 RNU1-119P-201ENST00000391122 165 ntBASIC1.21□□□□□ -2.22
MSX2P35548 AC244505.6-201ENST00000452829 130 ntBASIC1.21□□□□□ -2.22
MSX2P35548 RNU6-1265P-201ENST00000516342 103 ntBASIC1.21□□□□□ -2.22
MSX2P35548 MTRNR2L2-201ENST00000604882 87 ntBASIC1.21□□□□□ -2.22
MSX2P35548 RMST_2.1-201ENST00000617263 136 ntBASIC1.21□□□□□ -2.22
MSX2P35548 U6.100-201ENST00000636230 99 ntBASIC1.21□□□□□ -2.22
MSX2P35548 SNORA7.1-201ENST00000363750 139 ntBASIC1.2□□□□□ -2.22
MSX2P35548 MIR520F-201ENST00000384824 87 ntBASIC1.2□□□□□ -2.22
MSX2P35548 MIR222-201ENST00000384992 110 ntBASIC1.2□□□□□ -2.22
MSX2P35548 SNORD90-201ENST00000391145 111 ntBASIC1.2□□□□□ -2.22
MSX2P35548 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
MSX2P35548 RNU1-123P-201ENST00000458950 160 ntBASIC1.2□□□□□ -2.22
MSX2P35548 RNU6-557P-201ENST00000516842 110 ntBASIC1.2□□□□□ -2.22
MSX2P35548 AL157834.3-201ENST00000615543 103 ntBASIC1.2□□□□□ -2.22
MSX2P35548 RNU1-124P-201ENST00000363861 145 ntBASIC1.19□□□□□ -2.22
MSX2P35548 MIR4696-201ENST00000581431 70 ntBASIC1.19□□□□□ -2.22
MSX2P35548 uc_338.16-201ENST00000621804 95 ntBASIC1.19□□□□□ -2.22
MSX2P35548 ZNF209P-201ENST00000593450 2304 ntBASIC1.18□□□□□ -2.22
MSX2P35548 Y_RNA.32-201ENST00000362589 110 ntBASIC1.18□□□□□ -2.22
MSX2P35548 AC067940.1-201ENST00000458411 300 ntBASIC1.18□□□□□ -2.22
MSX2P35548 AC004223.1-201ENST00000479840 271 ntBASIC1.18□□□□□ -2.22
MSX2P35548 FGF7P7-201ENST00000514120 227 ntBASIC1.18□□□□□ -2.22
MSX2P35548 SNORA31.14-201ENST00000516728 116 ntBASIC1.18□□□□□ -2.22
MSX2P35548 RNU6-664P-201ENST00000362381 107 ntBASIC1.17□□□□□ -2.22
MSX2P35548 SNORD101-201ENST00000384027 73 ntBASIC1.17□□□□□ -2.22
MSX2P35548 MIR19B1-201ENST00000384829 87 ntBASIC1.17□□□□□ -2.22
MSX2P35548 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.16□□□□□ -2.22
MSX2P35548 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.16□□□□□ -2.22
MSX2P35548 MIRLET7A1-201ENST00000362295 80 ntBASIC1.16□□□□□ -2.22
MSX2P35548 MIR520H-201ENST00000385126 88 ntBASIC1.16□□□□□ -2.22
MSX2P35548 MIR4421-201ENST00000578133 69 ntBASIC1.16□□□□□ -2.22
MSX2P35548 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.16□□□□□ -2.22
MSX2P35548 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.16□□□□□ -2.22
MSX2P35548 RNU6-161P-201ENST00000363051 106 ntBASIC1.15□□□□□ -2.23
MSX2P35548 Y_RNA.239-201ENST00000364444 113 ntBASIC1.15□□□□□ -2.23
MSX2P35548 RNU6-686P-201ENST00000364839 107 ntBASIC1.15□□□□□ -2.23
MSX2P35548 RNU6-392P-201ENST00000364926 101 ntBASIC1.15□□□□□ -2.23
MSX2P35548 RNU6-1296P-201ENST00000383879 107 ntBASIC1.15□□□□□ -2.23
MSX2P35548 MIR489-201ENST00000384923 84 ntBASIC1.15□□□□□ -2.23
MSX2P35548 MIR1276-201ENST00000408707 83 ntBASIC1.15□□□□□ -2.23
MSX2P35548 Y_RNA.596-201ENST00000410462 109 ntBASIC1.15□□□□□ -2.23
MSX2P35548 Y_RNA.660-201ENST00000516002 120 ntBASIC1.15□□□□□ -2.23
MSX2P35548 RNU6-1108P-201ENST00000516308 104 ntBASIC1.15□□□□□ -2.23
MSX2P35548 MIR6504-201ENST00000613520 61 ntBASIC1.15□□□□□ -2.23
MSX2P35548 Y_RNA.174-201ENST00000363781 105 ntBASIC1.14□□□□□ -2.23
MSX2P35548 RNU6-776P-201ENST00000364403 104 ntBASIC1.14□□□□□ -2.23
MSX2P35548 RNU6-1022P-201ENST00000365049 104 ntBASIC1.14□□□□□ -2.23
MSX2P35548 MIR1285-1-201ENST00000408593 84 ntBASIC1.14□□□□□ -2.23
MSX2P35548 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC1.14□□□□□ -2.23
MSX2P35548 MIR4662A-201ENST00000637499 67 ntBASIC1.14□□□□□ -2.23
MSX2P35548 RNU6-1229P-201ENST00000364295 107 ntBASIC1.13□□□□□ -2.23
MSX2P35548 RNU6-1051P-201ENST00000365471 102 ntBASIC1.13□□□□□ -2.23
MSX2P35548 snoU13.18-201ENST00000459483 104 ntBASIC1.13□□□□□ -2.23
MSX2P35548 RNU6-1110P-201ENST00000516462 101 ntBASIC1.13□□□□□ -2.23
MSX2P35548 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.13□□□□□ -2.23
MSX2P35548 AL353770.2-201ENST00000620024 78 ntBASIC1.13□□□□□ -2.23
MSX2P35548 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.12□□□□□ -2.23
MSX2P35548 RNU6-1094P-201ENST00000362416 104 ntBASIC1.12□□□□□ -2.23
MSX2P35548 RNA5SP403-201ENST00000363598 108 ntBASIC1.12□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 243.6 ms