Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 RNU7-195P-201ENST00000458793 62 ntBASIC0.4□□□□□ -2.35
HOXD4P09016 RNU7-106P-201ENST00000459514 67 ntBASIC0.4□□□□□ -2.35
HOXD4P09016 RNU6-412P-201ENST00000516434 106 ntBASIC0.4□□□□□ -2.35
HOXD4P09016 SCARNA16.5-201ENST00000517114 183 ntBASIC0.4□□□□□ -2.35
HOXD4P09016 RNU6-90P-201ENST00000606352 106 ntBASIC0.4□□□□□ -2.35
HOXD4P09016 U2.22-201ENST00000636441 106 ntBASIC0.4□□□□□ -2.35
HOXD4P09016 Y_RNA.68-201ENST00000362881 102 ntBASIC0.39□□□□□ -2.35
HOXD4P09016 RNU6-1099P-201ENST00000363533 107 ntBASIC0.39□□□□□ -2.35
HOXD4P09016 Y_RNA.173-201ENST00000363776 113 ntBASIC0.39□□□□□ -2.35
HOXD4P09016 RNU6-1014P-201ENST00000383940 103 ntBASIC0.39□□□□□ -2.35
HOXD4P09016 MIR516A2-201ENST00000384888 90 ntBASIC0.39□□□□□ -2.35
HOXD4P09016 MIR516A1-201ENST00000385033 90 ntBASIC0.39□□□□□ -2.35
HOXD4P09016 MIR519A1-201ENST00000385257 85 ntBASIC0.39□□□□□ -2.35
HOXD4P09016 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC0.39□□□□□ -2.35
HOXD4P09016 RNA5SP268-201ENST00000516828 124 ntBASIC0.39□□□□□ -2.35
HOXD4P09016 RNU7-161P-201ENST00000517289 62 ntBASIC0.39□□□□□ -2.35
HOXD4P09016 MIR3613-201ENST00000579844 87 ntBASIC0.39□□□□□ -2.35
HOXD4P09016 MIR6828-201ENST00000636181 60 ntBASIC0.39□□□□□ -2.35
HOXD4P09016 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.38□□□□□ -2.35
HOXD4P09016 SNORD118-201ENST00000363593 134 ntBASIC0.38□□□□□ -2.35
HOXD4P09016 Y_RNA.221-201ENST00000364248 96 ntBASIC0.38□□□□□ -2.35
HOXD4P09016 SNORA40.8-201ENST00000411034 126 ntBASIC0.38□□□□□ -2.35
HOXD4P09016 SNORA68.3-201ENST00000515906 83 ntBASIC0.38□□□□□ -2.35
HOXD4P09016 Y_RNA.809-201ENST00000516058 95 ntBASIC0.38□□□□□ -2.35
HOXD4P09016 AC096720.1-201ENST00000604441 183 ntBASIC0.38□□□□□ -2.35
HOXD4P09016 MIR7107-201ENST00000611489 80 ntBASIC0.38□□□□□ -2.35
HOXD4P09016 RNU6-1163P-201ENST00000364516 107 ntBASIC0.37□□□□□ -2.35
HOXD4P09016 Y_RNA.273-201ENST00000364703 102 ntBASIC0.37□□□□□ -2.35
HOXD4P09016 MIR518A1-201ENST00000385068 85 ntBASIC0.37□□□□□ -2.35
HOXD4P09016 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.37□□□□□ -2.35
HOXD4P09016 RNA5SP227-201ENST00000516184 113 ntBASIC0.37□□□□□ -2.35
HOXD4P09016 RNU6-589P-201ENST00000516485 107 ntBASIC0.37□□□□□ -2.35
HOXD4P09016 AC141557.1-201ENST00000540982 400 ntBASIC0.37□□□□□ -2.35
HOXD4P09016 Y_RNA.57-201ENST00000362806 113 ntBASIC0.36□□□□□ -2.35
HOXD4P09016 RNU6-1260P-201ENST00000362944 107 ntBASIC0.36□□□□□ -2.35
HOXD4P09016 RNA5SP403-201ENST00000363598 108 ntBASIC0.36□□□□□ -2.35
HOXD4P09016 RNU6-1081P-201ENST00000384537 107 ntBASIC0.36□□□□□ -2.35
HOXD4P09016 SNORA19.1-201ENST00000410656 129 ntBASIC0.36□□□□□ -2.35
HOXD4P09016 SNORD71-201ENST00000411292 86 ntBASIC0.36□□□□□ -2.35
HOXD4P09016 RNU7-104P-201ENST00000459398 79 ntBASIC0.36□□□□□ -2.35
HOXD4P09016 Y_RNA.659-201ENST00000515994 113 ntBASIC0.36□□□□□ -2.35
HOXD4P09016 SNORA62.5-201ENST00000516634 120 ntBASIC0.36□□□□□ -2.35
HOXD4P09016 AC091304.10-201ENST00000641554 121 ntBASIC0.36□□□□□ -2.35
HOXD4P09016 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.35□□□□□ -2.35
HOXD4P09016 AC109327.2-201ENST00000448339 378 ntBASIC0.35□□□□□ -2.35
HOXD4P09016 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.35□□□□□ -2.35
HOXD4P09016 SNORD36A-201ENST00000362874 73 ntBASIC0.34□□□□□ -2.36
HOXD4P09016 RNU6-1290P-201ENST00000362957 109 ntBASIC0.34□□□□□ -2.36
HOXD4P09016 Y_RNA.163-201ENST00000363702 113 ntBASIC0.34□□□□□ -2.36
HOXD4P09016 Y_RNA.178-201ENST00000363832 102 ntBASIC0.34□□□□□ -2.36
HOXD4P09016 RNU6-524P-201ENST00000384270 107 ntBASIC0.34□□□□□ -2.36
HOXD4P09016 RNU6-1254P-201ENST00000391266 104 ntBASIC0.34□□□□□ -2.36
HOXD4P09016 Y_RNA.709-201ENST00000516952 92 ntBASIC0.34□□□□□ -2.36
HOXD4P09016 MIRLET7D-201ENST00000362263 87 ntBASIC0.33□□□□□ -2.36
HOXD4P09016 RNU6-1244P-201ENST00000363614 108 ntBASIC0.33□□□□□ -2.36
HOXD4P09016 RNU4-36P-201ENST00000364294 144 ntBASIC0.33□□□□□ -2.36
HOXD4P09016 RNU6-726P-201ENST00000364680 107 ntBASIC0.33□□□□□ -2.36
HOXD4P09016 Y_RNA.433-201ENST00000384089 102 ntBASIC0.33□□□□□ -2.36
HOXD4P09016 RNU6-106P-201ENST00000384405 107 ntBASIC0.33□□□□□ -2.36
HOXD4P09016 RNU6-554P-201ENST00000410466 106 ntBASIC0.33□□□□□ -2.36
HOXD4P09016 Y_RNA.629-201ENST00000411368 105 ntBASIC0.33□□□□□ -2.36
HOXD4P09016 RNU6-1265P-201ENST00000516342 103 ntBASIC0.33□□□□□ -2.36
HOXD4P09016 MIR4514-201ENST00000581410 57 ntBASIC0.33□□□□□ -2.36
HOXD4P09016 RNU6-86P-201ENST00000606534 107 ntBASIC0.33□□□□□ -2.36
HOXD4P09016 uc_338.28-201ENST00000612082 187 ntBASIC0.33□□□□□ -2.36
HOXD4P09016 MIR2909-201ENST00000617113 69 ntBASIC0.33□□□□□ -2.36
HOXD4P09016 SNORD45B-201ENST00000364617 72 ntBASIC0.32□□□□□ -2.36
HOXD4P09016 RNU6-1325P-201ENST00000364905 105 ntBASIC0.32□□□□□ -2.36
HOXD4P09016 MIR181B2-201ENST00000385004 89 ntBASIC0.32□□□□□ -2.36
HOXD4P09016 RNU6-243P-201ENST00000391140 107 ntBASIC0.32□□□□□ -2.36
HOXD4P09016 MIR548L-201ENST00000408303 86 ntBASIC0.32□□□□□ -2.36
HOXD4P09016 AC069271.1-201ENST00000445577 156 ntBASIC0.32□□□□□ -2.36
HOXD4P09016 RNU6-904P-201ENST00000516206 101 ntBASIC0.32□□□□□ -2.36
HOXD4P09016 AC023932.2-201ENST00000603176 175 ntBASIC0.32□□□□□ -2.36
HOXD4P09016 AC067863.3-201ENST00000624172 122 ntBASIC0.32□□□□□ -2.36
HOXD4P09016 AC090625.1-201ENST00000357130 210 ntBASIC0.31□□□□□ -2.36
HOXD4P09016 MIR103A1-201ENST00000362165 78 ntBASIC0.31□□□□□ -2.36
HOXD4P09016 Y_RNA.10-201ENST00000362371 110 ntBASIC0.31□□□□□ -2.36
HOXD4P09016 Y_RNA.78-201ENST00000362970 110 ntBASIC0.31□□□□□ -2.36
HOXD4P09016 Y_RNA.95-201ENST00000363079 95 ntBASIC0.31□□□□□ -2.36
HOXD4P09016 SNORD44.1-201ENST00000363202 61 ntBASIC0.31□□□□□ -2.36
HOXD4P09016 RNU6-1125P-201ENST00000363601 107 ntBASIC0.31□□□□□ -2.36
HOXD4P09016 Y_RNA.291-201ENST00000364886 113 ntBASIC0.31□□□□□ -2.36
HOXD4P09016 RNU6-1126P-201ENST00000384002 107 ntBASIC0.31□□□□□ -2.36
HOXD4P09016 RNU6-480P-201ENST00000384332 107 ntBASIC0.31□□□□□ -2.36
HOXD4P09016 RNA5SP63-201ENST00000391225 112 ntBASIC0.31□□□□□ -2.36
HOXD4P09016 MIR1302-5-201ENST00000408164 150 ntBASIC0.31□□□□□ -2.36
HOXD4P09016 Y_RNA.601-201ENST00000410500 113 ntBASIC0.31□□□□□ -2.36
HOXD4P09016 AL161932.1-201ENST00000437408 146 ntBASIC0.31□□□□□ -2.36
HOXD4P09016 RNU6-795P-201ENST00000516323 103 ntBASIC0.31□□□□□ -2.36
HOXD4P09016 MIR548Z-201ENST00000584743 97 ntBASIC0.31□□□□□ -2.36
HOXD4P09016 AC012531.4-201ENST00000616509 177 ntBASIC0.31□□□□□ -2.36
HOXD4P09016 Y_RNA.467-201ENST00000384297 102 ntBASIC0.3□□□□□ -2.36
HOXD4P09016 MIR590-201ENST00000385008 97 ntBASIC0.3□□□□□ -2.36
HOXD4P09016 RNY4P18-201ENST00000391107 89 ntBASIC0.3□□□□□ -2.36
HOXD4P09016 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.3□□□□□ -2.36
HOXD4P09016 MIR548AI-201ENST00000579940 88 ntBASIC0.3□□□□□ -2.36
HOXD4P09016 MIR4777-201ENST00000583710 86 ntBASIC0.3□□□□□ -2.36
HOXD4P09016 MIR4439-201ENST00000583746 80 ntBASIC0.3□□□□□ -2.36
HOXD4P09016 AC025521.1-201ENST00000621624 286 ntBASIC0.3□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 245.7 ms