Protein–RNA interactions for Protein: P48436

SOX9, Transcription factor SOX-9, humanhuman

Predictions only

Length 509 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX9P48436 MIR3660-201ENST00000584845 100 ntBASIC1.34□□□□□ -2.19
SOX9P48436 RNU6-86P-201ENST00000606534 107 ntBASIC1.34□□□□□ -2.19
SOX9P48436 MIR6779-201ENST00000617283 64 ntBASIC1.34□□□□□ -2.19
SOX9P48436 Y_RNA.56-201ENST00000362798 112 ntBASIC1.33□□□□□ -2.2
SOX9P48436 RNA5SP325-201ENST00000363756 130 ntBASIC1.33□□□□□ -2.2
SOX9P48436 Y_RNA.173-201ENST00000363776 113 ntBASIC1.33□□□□□ -2.2
SOX9P48436 RNU6-1163P-201ENST00000364516 107 ntBASIC1.33□□□□□ -2.2
SOX9P48436 MIR635-201ENST00000384830 98 ntBASIC1.33□□□□□ -2.2
SOX9P48436 MIR150-201ENST00000385048 84 ntBASIC1.33□□□□□ -2.2
SOX9P48436 MTATP8P2-201ENST00000435212 202 ntBASIC1.33□□□□□ -2.2
SOX9P48436 RNU6-448P-201ENST00000517052 107 ntBASIC1.33□□□□□ -2.2
SOX9P48436 Y_RNA.57-201ENST00000362806 113 ntBASIC1.32□□□□□ -2.2
SOX9P48436 RNU6-535P-201ENST00000384722 107 ntBASIC1.32□□□□□ -2.2
SOX9P48436 RNU6-972P-201ENST00000391208 107 ntBASIC1.32□□□□□ -2.2
SOX9P48436 SNORD100-201ENST00000408573 76 ntBASIC1.32□□□□□ -2.2
SOX9P48436 MIR4777-201ENST00000583710 86 ntBASIC1.32□□□□□ -2.2
SOX9P48436 AC022709.1-201ENST00000615967 87 ntBASIC1.32□□□□□ -2.2
SOX9P48436 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.32□□□□□ -2.2
SOX9P48436 Y_RNA.342-201ENST00000365352 113 ntBASIC1.31□□□□□ -2.2
SOX9P48436 Y_RNA.348-201ENST00000365403 103 ntBASIC1.31□□□□□ -2.2
SOX9P48436 Y_RNA.467-201ENST00000384297 102 ntBASIC1.31□□□□□ -2.2
SOX9P48436 Y_RNA.536-201ENST00000384621 113 ntBASIC1.31□□□□□ -2.2
SOX9P48436 RNU7-61P-201ENST00000515897 61 ntBASIC1.31□□□□□ -2.2
SOX9P48436 MIR548Z-201ENST00000584743 97 ntBASIC1.31□□□□□ -2.2
SOX9P48436 AC008608.1-201ENST00000603910 127 ntBASIC1.31□□□□□ -2.2
SOX9P48436 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC1.31□□□□□ -2.2
SOX9P48436 Y_RNA.36-201ENST00000362602 112 ntBASIC1.3□□□□□ -2.2
SOX9P48436 RNU6-1244P-201ENST00000363614 108 ntBASIC1.3□□□□□ -2.2
SOX9P48436 RNU6-644P-201ENST00000391155 98 ntBASIC1.3□□□□□ -2.2
SOX9P48436 RNA5SP255-201ENST00000516370 107 ntBASIC1.3□□□□□ -2.2
SOX9P48436 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.3□□□□□ -2.2
SOX9P48436 RNU1-93P-201ENST00000364704 169 ntBASIC1.29□□□□□ -2.2
SOX9P48436 MIR520E-201ENST00000384867 87 ntBASIC1.29□□□□□ -2.2
SOX9P48436 RNU6-887P-201ENST00000410660 100 ntBASIC1.29□□□□□ -2.2
SOX9P48436 Y_RNA.694-201ENST00000516677 117 ntBASIC1.29□□□□□ -2.2
SOX9P48436 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC1.29□□□□□ -2.2
SOX9P48436 RNA5SP117-201ENST00000365294 118 ntBASIC1.28□□□□□ -2.2
SOX9P48436 RPS29P1-201ENST00000465274 159 ntBASIC1.28□□□□□ -2.2
SOX9P48436 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC1.28□□□□□ -2.2
SOX9P48436 AC103810.7-201ENST00000607821 91 ntBASIC1.28□□□□□ -2.2
SOX9P48436 AC138907.6-201ENST00000568401 126 ntBASIC1.27□□□□□ -2.21
SOX9P48436 AC138869.1-201ENST00000568623 124 ntBASIC1.27□□□□□ -2.21
SOX9P48436 MIR4661-201ENST00000582720 75 ntBASIC1.27□□□□□ -2.21
SOX9P48436 Y_RNA.174-201ENST00000363781 105 ntBASIC1.26□□□□□ -2.21
SOX9P48436 RNU6-905P-201ENST00000384434 107 ntBASIC1.26□□□□□ -2.21
SOX9P48436 RNU6-291P-201ENST00000384720 107 ntBASIC1.26□□□□□ -2.21
SOX9P48436 MIR598-201ENST00000384868 97 ntBASIC1.26□□□□□ -2.21
SOX9P48436 MIR181B2-201ENST00000385004 89 ntBASIC1.26□□□□□ -2.21
SOX9P48436 RNY4P30-201ENST00000410216 95 ntBASIC1.26□□□□□ -2.21
SOX9P48436 SNORD63B-201ENST00000411005 70 ntBASIC1.26□□□□□ -2.21
SOX9P48436 RNU6-1223P-201ENST00000517124 104 ntBASIC1.26□□□□□ -2.21
SOX9P48436 MIR6767-201ENST00000637302 66 ntBASIC1.26□□□□□ -2.21
SOX9P48436 RNU6-640P-201ENST00000363693 105 ntBASIC1.25□□□□□ -2.21
SOX9P48436 Y_RNA.220-201ENST00000364244 109 ntBASIC1.25□□□□□ -2.21
SOX9P48436 AC092628.1-201ENST00000436250 252 ntBASIC1.25□□□□□ -2.21
SOX9P48436 AC068338.1-201ENST00000565567 176 ntBASIC1.25□□□□□ -2.21
SOX9P48436 PVT1_3.1-201ENST00000620853 95 ntBASIC1.25□□□□□ -2.21
SOX9P48436 RNU6-243P-201ENST00000391140 107 ntBASIC1.24□□□□□ -2.21
SOX9P48436 RNU6-1254P-201ENST00000391266 104 ntBASIC1.24□□□□□ -2.21
SOX9P48436 U7.3-201ENST00000616123 62 ntBASIC1.24□□□□□ -2.21
SOX9P48436 RNU6-1335P-201ENST00000365426 107 ntBASIC1.23□□□□□ -2.21
SOX9P48436 RNU6-162P-201ENST00000516228 103 ntBASIC1.23□□□□□ -2.21
SOX9P48436 RNU6-469P-201ENST00000516253 101 ntBASIC1.23□□□□□ -2.21
SOX9P48436 SNORD116-10-201ENST00000363791 102 ntBASIC1.22□□□□□ -2.21
SOX9P48436 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC1.22□□□□□ -2.21
SOX9P48436 MIR516A2-201ENST00000384888 90 ntBASIC1.22□□□□□ -2.21
SOX9P48436 MIR573-201ENST00000384964 99 ntBASIC1.22□□□□□ -2.21
SOX9P48436 MIR516A1-201ENST00000385033 90 ntBASIC1.22□□□□□ -2.21
SOX9P48436 MIR758-201ENST00000390227 88 ntBASIC1.22□□□□□ -2.21
SOX9P48436 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.22□□□□□ -2.21
SOX9P48436 SNORD99-201ENST00000408612 74 ntBASIC1.22□□□□□ -2.21
SOX9P48436 AC002350.1-201ENST00000490759 375 ntBASIC1.22□□□□□ -2.21
SOX9P48436 TRAJ51-201ENST00000504127 63 ntBASIC1.22□□□□□ -2.21
SOX9P48436 MALAT1.1-201ENST00000618249 95 ntBASIC1.22□□□□□ -2.21
SOX9P48436 RNA5SP170-201ENST00000517150 101 ntBASIC1.21□□□□□ -2.22
SOX9P48436 MIR151B-201ENST00000584249 96 ntBASIC1.21□□□□□ -2.22
SOX9P48436 SNORD58A-201ENST00000383875 65 ntBASIC1.2□□□□□ -2.22
SOX9P48436 AC097635.1-201ENST00000450678 155 ntBASIC1.2□□□□□ -2.22
SOX9P48436 Y_RNA.809-201ENST00000516058 95 ntBASIC1.2□□□□□ -2.22
SOX9P48436 AC011195.1-201ENST00000578177 177 ntBASIC1.2□□□□□ -2.22
SOX9P48436 MIR6788-201ENST00000618842 66 ntBASIC1.2□□□□□ -2.22
SOX9P48436 AC025521.1-201ENST00000621624 286 ntBASIC1.2□□□□□ -2.22
SOX9P48436 Y_RNA.32-201ENST00000362589 110 ntBASIC1.19□□□□□ -2.22
SOX9P48436 RNU7-195P-201ENST00000458793 62 ntBASIC1.19□□□□□ -2.22
SOX9P48436 SNORA31.14-201ENST00000516728 116 ntBASIC1.19□□□□□ -2.22
SOX9P48436 AL513043.2-201ENST00000573941 143 ntBASIC1.19□□□□□ -2.22
SOX9P48436 MIR4295-201ENST00000585286 85 ntBASIC1.19□□□□□ -2.22
SOX9P48436 Y_RNA.205-201ENST00000364128 113 ntBASIC1.18□□□□□ -2.22
SOX9P48436 MIR599-201ENST00000385069 95 ntBASIC1.18□□□□□ -2.22
SOX9P48436 MIR519A1-201ENST00000385257 85 ntBASIC1.18□□□□□ -2.22
SOX9P48436 RNU6-135P-201ENST00000516769 101 ntBASIC1.18□□□□□ -2.22
SOX9P48436 MIR3612-201ENST00000579753 87 ntBASIC1.18□□□□□ -2.22
SOX9P48436 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.18□□□□□ -2.22
SOX9P48436 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.17□□□□□ -2.22
SOX9P48436 MIR548J-201ENST00000408833 112 ntBASIC1.17□□□□□ -2.22
SOX9P48436 RNU7-106P-201ENST00000459514 67 ntBASIC1.17□□□□□ -2.22
SOX9P48436 AC087343.1-201ENST00000477341 475 ntBASIC1.17□□□□□ -2.22
SOX9P48436 uc_338.16-201ENST00000621804 95 ntBASIC1.17□□□□□ -2.22
SOX9P48436 Y_RNA.290-201ENST00000364879 114 ntBASIC1.16□□□□□ -2.22
SOX9P48436 RNU6-1131P-201ENST00000364955 107 ntBASIC1.16□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 11.2 ms