Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 RNU6-196P-201ENST00000384315 107 ntBASIC-0.33□□□□□ -2.46
SHMT2P34897 MIR329-2-201ENST00000385029 84 ntBASIC-0.33□□□□□ -2.46
SHMT2P34897 RNU6ATAC41P-201ENST00000408600 126 ntBASIC-0.33□□□□□ -2.46
SHMT2P34897 AC093423.1-201ENST00000440817 142 ntBASIC-0.33□□□□□ -2.46
SHMT2P34897 RNU7-106P-201ENST00000459514 67 ntBASIC-0.33□□□□□ -2.46
SHMT2P34897 Y_RNA.162-201ENST00000363683 102 ntBASIC-0.34□□□□□ -2.46
SHMT2P34897 SNORD49B-201ENST00000365172 72 ntBASIC-0.34□□□□□ -2.46
SHMT2P34897 MIR34C-201ENST00000384831 77 ntBASIC-0.34□□□□□ -2.46
SHMT2P34897 MIR516B1-201ENST00000385211 90 ntBASIC-0.34□□□□□ -2.46
SHMT2P34897 MIR214-201ENST00000385214 110 ntBASIC-0.34□□□□□ -2.46
SHMT2P34897 Y_RNA.644-201ENST00000459006 113 ntBASIC-0.34□□□□□ -2.46
SHMT2P34897 RNU7-74P-201ENST00000459104 62 ntBASIC-0.34□□□□□ -2.46
SHMT2P34897 Y_RNA.674-201ENST00000516362 113 ntBASIC-0.34□□□□□ -2.46
SHMT2P34897 RNU6-320P-201ENST00000516511 106 ntBASIC-0.34□□□□□ -2.46
SHMT2P34897 RNU6-850P-201ENST00000516934 103 ntBASIC-0.34□□□□□ -2.46
SHMT2P34897 AL590491.3-201ENST00000610731 82 ntBASIC-0.34□□□□□ -2.46
SHMT2P34897 AC141273.2-201ENST00000618989 130 ntBASIC-0.34□□□□□ -2.46
SHMT2P34897 AC087741.2-201ENST00000619415 172 ntBASIC-0.34□□□□□ -2.46
SHMT2P34897 Y_RNA.240-201ENST00000364469 95 ntBASIC-0.35□□□□□ -2.47
SHMT2P34897 RNU1-141P-201ENST00000364623 158 ntBASIC-0.35□□□□□ -2.47
SHMT2P34897 Y_RNA.360-201ENST00000365512 102 ntBASIC-0.35□□□□□ -2.47
SHMT2P34897 RNU6-574P-201ENST00000384265 107 ntBASIC-0.35□□□□□ -2.47
SHMT2P34897 MIR3666-201ENST00000607845 111 ntBASIC-0.35□□□□□ -2.47
SHMT2P34897 AC084368.1-201ENST00000620935 65 ntBASIC-0.35□□□□□ -2.47
SHMT2P34897 SNORD115-19-201ENST00000363098 82 ntBASIC-0.36□□□□□ -2.47
SHMT2P34897 SNORD115-18-201ENST00000363293 82 ntBASIC-0.36□□□□□ -2.47
SHMT2P34897 SNORD114-11-201ENST00000363738 75 ntBASIC-0.36□□□□□ -2.47
SHMT2P34897 SNORD115-17-201ENST00000364612 82 ntBASIC-0.36□□□□□ -2.47
SHMT2P34897 U8.6-201ENST00000364939 135 ntBASIC-0.36□□□□□ -2.47
SHMT2P34897 Y_RNA.297-201ENST00000364950 91 ntBASIC-0.36□□□□□ -2.47
SHMT2P34897 MIR519E-201ENST00000385075 84 ntBASIC-0.36□□□□□ -2.47
SHMT2P34897 MT-TI-201ENST00000387365 69 ntBASIC-0.36□□□□□ -2.47
SHMT2P34897 RNU5E-3P-201ENST00000515913 68 ntBASIC-0.36□□□□□ -2.47
SHMT2P34897 Y_RNA.696-201ENST00000516725 107 ntBASIC-0.36□□□□□ -2.47
SHMT2P34897 RNU6-175P-201ENST00000516896 107 ntBASIC-0.36□□□□□ -2.47
SHMT2P34897 MIR548AE1-201ENST00000583292 70 ntBASIC-0.36□□□□□ -2.47
SHMT2P34897 Y_RNA.35-201ENST00000362601 101 ntBASIC-0.37□□□□□ -2.47
SHMT2P34897 Y_RNA.342-201ENST00000365352 113 ntBASIC-0.37□□□□□ -2.47
SHMT2P34897 RNU6ATAC11P-201ENST00000408541 125 ntBASIC-0.37□□□□□ -2.47
SHMT2P34897 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC-0.37□□□□□ -2.47
SHMT2P34897 RNU7-197P-201ENST00000458836 62 ntBASIC-0.37□□□□□ -2.47
SHMT2P34897 RNU7-6P-201ENST00000516845 62 ntBASIC-0.37□□□□□ -2.47
SHMT2P34897 RNU7-188P-201ENST00000517063 64 ntBASIC-0.37□□□□□ -2.47
SHMT2P34897 IGLVI-20-201ENST00000519296 130 ntBASIC-0.37□□□□□ -2.47
SHMT2P34897 IGKV1-22-201ENST00000524313 326 ntBASIC-0.37□□□□□ -2.47
SHMT2P34897 AP002392.1-201ENST00000537692 208 ntBASIC-0.37□□□□□ -2.47
SHMT2P34897 Y_RNA.773-201ENST00000607168 90 ntBASIC-0.37□□□□□ -2.47
SHMT2P34897 RNU4-11P-201ENST00000365287 132 ntBASIC-0.38□□□□□ -2.47
SHMT2P34897 Y_RNA.441-201ENST00000384123 112 ntBASIC-0.38□□□□□ -2.47
SHMT2P34897 RNU6-1135P-201ENST00000411083 103 ntBASIC-0.38□□□□□ -2.47
SHMT2P34897 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC-0.38□□□□□ -2.47
SHMT2P34897 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC-0.38□□□□□ -2.47
SHMT2P34897 MIR4473-201ENST00000583731 91 ntBASIC-0.38□□□□□ -2.47
SHMT2P34897 Y_RNA.30-201ENST00000362572 97 ntBASIC-0.39□□□□□ -2.47
SHMT2P34897 MIR516A2-201ENST00000384888 90 ntBASIC-0.39□□□□□ -2.47
SHMT2P34897 MIR516A1-201ENST00000385033 90 ntBASIC-0.39□□□□□ -2.47
SHMT2P34897 MIR196A2-201ENST00000385189 110 ntBASIC-0.39□□□□□ -2.47
SHMT2P34897 RNA5SP285-201ENST00000516619 119 ntBASIC-0.39□□□□□ -2.47
SHMT2P34897 RNU6-521P-201ENST00000516663 105 ntBASIC-0.39□□□□□ -2.47
SHMT2P34897 MIR3163-201ENST00000581592 73 ntBASIC-0.39□□□□□ -2.47
SHMT2P34897 MIR8064-201ENST00000612863 90 ntBASIC-0.39□□□□□ -2.47
SHMT2P34897 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC-0.4□□□□□ -2.47
SHMT2P34897 RNA5SP275-201ENST00000363936 118 ntBASIC-0.4□□□□□ -2.47
SHMT2P34897 SNORD115-44-201ENST00000365391 82 ntBASIC-0.4□□□□□ -2.47
SHMT2P34897 MIR539-201ENST00000365690 78 ntBASIC-0.4□□□□□ -2.47
SHMT2P34897 Y_RNA.391-201ENST00000383933 94 ntBASIC-0.4□□□□□ -2.47
SHMT2P34897 Y_RNA.489-201ENST00000384410 101 ntBASIC-0.4□□□□□ -2.47
SHMT2P34897 MIR181B2-201ENST00000385004 89 ntBASIC-0.4□□□□□ -2.47
SHMT2P34897 MIR617-201ENST00000385030 97 ntBASIC-0.4□□□□□ -2.47
SHMT2P34897 AC096531.1-201ENST00000419107 107 ntBASIC-0.4□□□□□ -2.47
SHMT2P34897 SNORD126-201ENST00000459475 77 ntBASIC-0.4□□□□□ -2.47
SHMT2P34897 MIR3121-201ENST00000579680 77 ntBASIC-0.4□□□□□ -2.47
SHMT2P34897 MIR4788-201ENST00000639104 80 ntBASIC-0.4□□□□□ -2.47
SHMT2P34897 RNU6-682P-201ENST00000363843 106 ntBASIC-0.41□□□□□ -2.48
SHMT2P34897 Y_RNA.272-201ENST00000364696 102 ntBASIC-0.41□□□□□ -2.48
SHMT2P34897 SNORD14C-201ENST00000365382 88 ntBASIC-0.41□□□□□ -2.48
SHMT2P34897 RNU6-1144P-201ENST00000384247 104 ntBASIC-0.41□□□□□ -2.48
SHMT2P34897 RNU6-460P-201ENST00000391158 108 ntBASIC-0.41□□□□□ -2.48
SHMT2P34897 RNU7-120P-201ENST00000459334 63 ntBASIC-0.41□□□□□ -2.48
SHMT2P34897 RNU6-861P-201ENST00000516745 106 ntBASIC-0.41□□□□□ -2.48
SHMT2P34897 AC069503.3-201ENST00000618674 145 ntBASIC-0.41□□□□□ -2.48
SHMT2P34897 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC-0.41□□□□□ -2.48
SHMT2P34897 MIR1255B1-201ENST00000636325 63 ntBASIC-0.41□□□□□ -2.48
SHMT2P34897 AL162726.3-218ENST00000636401 95 ntBASIC-0.41□□□□□ -2.48
SHMT2P34897 SNORD114-31-201ENST00000363219 75 ntBASIC-0.42□□□□□ -2.48
SHMT2P34897 RNU6-915P-201ENST00000364943 103 ntBASIC-0.42□□□□□ -2.48
SHMT2P34897 SNORD38.2-201ENST00000384470 69 ntBASIC-0.42□□□□□ -2.48
SHMT2P34897 RNU5B-6P-201ENST00000516765 68 ntBASIC-0.42□□□□□ -2.48
SHMT2P34897 SNORA81.3-201ENST00000517283 198 ntBASIC-0.42□□□□□ -2.48
SHMT2P34897 YWHAEP2-201ENST00000580066 112 ntBASIC-0.42□□□□□ -2.48
SHMT2P34897 MIR6759-201ENST00000638110 65 ntBASIC-0.42□□□□□ -2.48
SHMT2P34897 RNU6-1244P-201ENST00000363614 108 ntBASIC-0.43□□□□□ -2.48
SHMT2P34897 Y_RNA.185-201ENST00000363894 100 ntBASIC-0.43□□□□□ -2.48
SHMT2P34897 RNU6-463P-201ENST00000384340 107 ntBASIC-0.43□□□□□ -2.48
SHMT2P34897 AL161932.1-201ENST00000437408 146 ntBASIC-0.43□□□□□ -2.48
SHMT2P34897 MIR2113-201ENST00000459007 91 ntBASIC-0.43□□□□□ -2.48
SHMT2P34897 Y_RNA.662-201ENST00000516028 97 ntBASIC-0.43□□□□□ -2.48
SHMT2P34897 MIR4645-201ENST00000583158 77 ntBASIC-0.43□□□□□ -2.48
SHMT2P34897 AC021753.1-201ENST00000635724 168 ntBASIC-0.43□□□□□ -2.48
SHMT2P34897 SNORA51.5-201ENST00000384126 131 ntBASIC-0.44□□□□□ -2.48
Retrieved 100 of 98,524 protein–RNA pairs in 225.5 ms