Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 SNORA36.1-201ENST00000363424 132 ntBASIC0.49□□□□□ -2.33
MSH3P20585 RNA5SP517-201ENST00000364724 117 ntBASIC0.49□□□□□ -2.33
MSH3P20585 SNORD28-201ENST00000384706 75 ntBASIC0.49□□□□□ -2.33
MSH3P20585 Y_RNA.567-201ENST00000384736 106 ntBASIC0.49□□□□□ -2.33
MSH3P20585 RN7SKP12-201ENST00000516275 143 ntBASIC0.49□□□□□ -2.33
MSH3P20585 RNU6-229P-201ENST00000516614 102 ntBASIC0.49□□□□□ -2.33
MSH3P20585 RNU6-850P-201ENST00000516934 103 ntBASIC0.49□□□□□ -2.33
MSH3P20585 MIR5009-201ENST00000578736 100 ntBASIC0.49□□□□□ -2.33
MSH3P20585 MIR4639-201ENST00000584938 69 ntBASIC0.49□□□□□ -2.33
MSH3P20585 AL442128.1-201ENST00000615151 90 ntBASIC0.49□□□□□ -2.33
MSH3P20585 AC022709.1-201ENST00000615967 87 ntBASIC0.49□□□□□ -2.33
MSH3P20585 MIR6515-201ENST00000619843 57 ntBASIC0.49□□□□□ -2.33
MSH3P20585 RNU6-834P-201ENST00000362367 110 ntBASIC0.48□□□□□ -2.33
MSH3P20585 Y_RNA.35-201ENST00000362601 101 ntBASIC0.48□□□□□ -2.33
MSH3P20585 U8.6-201ENST00000364939 135 ntBASIC0.48□□□□□ -2.33
MSH3P20585 Y_RNA.377-201ENST00000365644 108 ntBASIC0.48□□□□□ -2.33
MSH3P20585 RNU6-476P-201ENST00000384726 107 ntBASIC0.48□□□□□ -2.33
MSH3P20585 MIR577-201ENST00000385196 96 ntBASIC0.48□□□□□ -2.33
MSH3P20585 MIR519A1-201ENST00000385257 85 ntBASIC0.48□□□□□ -2.33
MSH3P20585 RNU6-1064P-201ENST00000410626 104 ntBASIC0.48□□□□□ -2.33
MSH3P20585 RNU2-51P-201ENST00000410708 197 ntBASIC0.48□□□□□ -2.33
MSH3P20585 RNA5SP47-201ENST00000517230 109 ntBASIC0.48□□□□□ -2.33
MSH3P20585 MTND5P40-201ENST00000559945 246 ntBASIC0.48□□□□□ -2.33
MSH3P20585 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.48□□□□□ -2.33
MSH3P20585 MIR6513-201ENST00000621188 64 ntBASIC0.48□□□□□ -2.33
MSH3P20585 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC0.48□□□□□ -2.33
MSH3P20585 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC0.48□□□□□ -2.33
MSH3P20585 Y_RNA.49-201ENST00000362714 112 ntBASIC0.47□□□□□ -2.33
MSH3P20585 Y_RNA.323-201ENST00000365157 109 ntBASIC0.47□□□□□ -2.33
MSH3P20585 MIR548G-201ENST00000408442 89 ntBASIC0.47□□□□□ -2.33
MSH3P20585 SNORD63B-201ENST00000411005 70 ntBASIC0.47□□□□□ -2.33
MSH3P20585 AC114737.2-201ENST00000421583 173 ntBASIC0.47□□□□□ -2.33
MSH3P20585 AC098934.3-201ENST00000430450 190 ntBASIC0.47□□□□□ -2.33
MSH3P20585 SPINT5P-201ENST00000448174 155 ntBASIC0.47□□□□□ -2.33
MSH3P20585 SCARNA16.5-201ENST00000517114 183 ntBASIC0.47□□□□□ -2.33
MSH3P20585 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.47□□□□□ -2.33
MSH3P20585 MIR4694-201ENST00000578534 80 ntBASIC0.47□□□□□ -2.33
MSH3P20585 RNU6-90P-201ENST00000606352 106 ntBASIC0.47□□□□□ -2.33
MSH3P20585 AC244669.1-204ENST00000621564 178 ntBASIC0.47□□□□□ -2.33
MSH3P20585 MIR5087-201ENST00000635826 76 ntBASIC0.47□□□□□ -2.33
MSH3P20585 MIR6828-201ENST00000636181 60 ntBASIC0.47□□□□□ -2.33
MSH3P20585 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.46□□□□□ -2.34
MSH3P20585 RNU6-1229P-201ENST00000364295 107 ntBASIC0.46□□□□□ -2.34
MSH3P20585 Y_RNA.342-201ENST00000365352 113 ntBASIC0.46□□□□□ -2.34
MSH3P20585 RNU6-412P-201ENST00000516434 106 ntBASIC0.46□□□□□ -2.34
MSH3P20585 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.46□□□□□ -2.34
MSH3P20585 RNY3P2-201ENST00000362918 102 ntBASIC0.45□□□□□ -2.34
MSH3P20585 RNU6-832P-201ENST00000363319 107 ntBASIC0.45□□□□□ -2.34
MSH3P20585 SNORD115-24-201ENST00000363528 82 ntBASIC0.45□□□□□ -2.34
MSH3P20585 RNU6-1099P-201ENST00000363533 107 ntBASIC0.45□□□□□ -2.34
MSH3P20585 Y_RNA.173-201ENST00000363776 113 ntBASIC0.45□□□□□ -2.34
MSH3P20585 SNORA8.2-201ENST00000384372 139 ntBASIC0.45□□□□□ -2.34
MSH3P20585 MIR598-201ENST00000384868 97 ntBASIC0.45□□□□□ -2.34
MSH3P20585 SNORA40.8-201ENST00000411034 126 ntBASIC0.45□□□□□ -2.34
MSH3P20585 AC097635.1-201ENST00000450678 155 ntBASIC0.45□□□□□ -2.34
MSH3P20585 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC0.45□□□□□ -2.34
MSH3P20585 RNU7-106P-201ENST00000459514 67 ntBASIC0.45□□□□□ -2.34
MSH3P20585 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC0.45□□□□□ -2.34
MSH3P20585 RNA5SP268-201ENST00000516828 124 ntBASIC0.45□□□□□ -2.34
MSH3P20585 SNORD118-201ENST00000363593 134 ntBASIC0.44□□□□□ -2.34
MSH3P20585 RNU6-1107P-201ENST00000364817 104 ntBASIC0.44□□□□□ -2.34
MSH3P20585 RNU6-1014P-201ENST00000383940 103 ntBASIC0.44□□□□□ -2.34
MSH3P20585 RNU6-1056P-201ENST00000383996 107 ntBASIC0.44□□□□□ -2.34
MSH3P20585 SNORA19-201ENST00000384737 128 ntBASIC0.44□□□□□ -2.34
MSH3P20585 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC0.44□□□□□ -2.34
MSH3P20585 RNU7-161P-201ENST00000517289 62 ntBASIC0.44□□□□□ -2.34
MSH3P20585 AC243829.3-201ENST00000622177 108 ntBASIC0.44□□□□□ -2.34
MSH3P20585 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC0.44□□□□□ -2.34
MSH3P20585 MIR518A1-201ENST00000385068 85 ntBASIC0.43□□□□□ -2.34
MSH3P20585 MIR599-201ENST00000385069 95 ntBASIC0.43□□□□□ -2.34
MSH3P20585 RNU7-195P-201ENST00000458793 62 ntBASIC0.43□□□□□ -2.34
MSH3P20585 RNA5SP436-201ENST00000516020 115 ntBASIC0.43□□□□□ -2.34
MSH3P20585 Y_RNA.809-201ENST00000516058 95 ntBASIC0.43□□□□□ -2.34
MSH3P20585 MIR3613-201ENST00000579844 87 ntBASIC0.43□□□□□ -2.34
MSH3P20585 AC096720.1-201ENST00000604441 183 ntBASIC0.43□□□□□ -2.34
MSH3P20585 MIR6129-201ENST00000616087 109 ntBASIC0.43□□□□□ -2.34
MSH3P20585 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.43□□□□□ -2.34
MSH3P20585 AC091304.10-201ENST00000641554 121 ntBASIC0.43□□□□□ -2.34
MSH3P20585 RNU6-1260P-201ENST00000362944 107 ntBASIC0.42□□□□□ -2.34
MSH3P20585 RNA5SP403-201ENST00000363598 108 ntBASIC0.42□□□□□ -2.34
MSH3P20585 Y_RNA.273-201ENST00000364703 102 ntBASIC0.42□□□□□ -2.34
MSH3P20585 MIR516A2-201ENST00000384888 90 ntBASIC0.42□□□□□ -2.34
MSH3P20585 MIR516A1-201ENST00000385033 90 ntBASIC0.42□□□□□ -2.34
MSH3P20585 MIR936-201ENST00000401264 98 ntBASIC0.42□□□□□ -2.34
MSH3P20585 AC141557.1-201ENST00000540982 400 ntBASIC0.42□□□□□ -2.34
MSH3P20585 SNORA25.18-201ENST00000607153 114 ntBASIC0.42□□□□□ -2.34
MSH3P20585 Y_RNA.221-201ENST00000364248 96 ntBASIC0.41□□□□□ -2.34
MSH3P20585 RNU6-1163P-201ENST00000364516 107 ntBASIC0.41□□□□□ -2.34
MSH3P20585 SNORA50A-201ENST00000384225 134 ntBASIC0.41□□□□□ -2.34
MSH3P20585 SNORD71-201ENST00000411292 86 ntBASIC0.41□□□□□ -2.34
MSH3P20585 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.41□□□□□ -2.34
MSH3P20585 SNORA68.3-201ENST00000515906 83 ntBASIC0.41□□□□□ -2.34
MSH3P20585 RNA5SP227-201ENST00000516184 113 ntBASIC0.41□□□□□ -2.34
MSH3P20585 RNU6-589P-201ENST00000516485 107 ntBASIC0.41□□□□□ -2.34
MSH3P20585 MIR7107-201ENST00000611489 80 ntBASIC0.41□□□□□ -2.34
MSH3P20585 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.41□□□□□ -2.34
MSH3P20585 RNU6-1081P-201ENST00000384537 107 ntBASIC0.4□□□□□ -2.35
MSH3P20585 RNU6-1254P-201ENST00000391266 104 ntBASIC0.4□□□□□ -2.35
MSH3P20585 Y_RNA.57-201ENST00000362806 113 ntBASIC0.39□□□□□ -2.35
MSH3P20585 SNORD36A-201ENST00000362874 73 ntBASIC0.39□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 210.7 ms