Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 RNA5SP470-201ENST00000516463 106 ntBASIC-1.45□□□□□ -2.64
LIMS3P0CW19 MIR378F-201ENST00000578143 78 ntBASIC-1.45□□□□□ -2.64
LIMS3P0CW19 MIR4282-201ENST00000583613 67 ntBASIC-1.45□□□□□ -2.64
LIMS3P0CW19 Y_RNA.207-201ENST00000364142 106 ntBASIC-1.46□□□□□ -2.64
LIMS3P0CW19 Y_RNA.262-201ENST00000364641 102 ntBASIC-1.46□□□□□ -2.64
LIMS3P0CW19 RNU6-643P-201ENST00000384018 107 ntBASIC-1.46□□□□□ -2.64
LIMS3P0CW19 RNU6-1254P-201ENST00000391266 104 ntBASIC-1.46□□□□□ -2.64
LIMS3P0CW19 SNORD22.1-201ENST00000516331 125 ntBASIC-1.46□□□□□ -2.64
LIMS3P0CW19 RNY1P9-201ENST00000532431 109 ntBASIC-1.46□□□□□ -2.64
LIMS3P0CW19 MRPS18CP4-201ENST00000535821 231 ntBASIC-1.46□□□□□ -2.64
LIMS3P0CW19 Y_RNA.26-201ENST00000362539 101 ntBASIC-1.47□□□□□ -2.64
LIMS3P0CW19 SNORD27-201ENST00000363981 72 ntBASIC-1.47□□□□□ -2.64
LIMS3P0CW19 RNU6-616P-201ENST00000384353 107 ntBASIC-1.47□□□□□ -2.64
LIMS3P0CW19 SNORD38.2-201ENST00000384470 69 ntBASIC-1.47□□□□□ -2.64
LIMS3P0CW19 Y_RNA.514-201ENST00000384528 112 ntBASIC-1.47□□□□□ -2.64
LIMS3P0CW19 U6.100-201ENST00000636230 99 ntBASIC-1.47□□□□□ -2.64
LIMS3P0CW19 Y_RNA.133-201ENST00000363428 110 ntBASIC-1.48□□□□□ -2.65
LIMS3P0CW19 Y_RNA.583-201ENST00000391033 113 ntBASIC-1.48□□□□□ -2.65
LIMS3P0CW19 MTATP6P21-201ENST00000440681 189 ntBASIC-1.48□□□□□ -2.65
LIMS3P0CW19 MTND5P22-201ENST00000458380 195 ntBASIC-1.48□□□□□ -2.65
LIMS3P0CW19 AC022137.1-201ENST00000483735 151 ntBASIC-1.48□□□□□ -2.65
LIMS3P0CW19 RN7SKP19-201ENST00000516016 252 ntBASIC-1.48□□□□□ -2.65
LIMS3P0CW19 U2.14-201ENST00000615943 113 ntBASIC-1.48□□□□□ -2.65
LIMS3P0CW19 Y_RNA.189-201ENST00000363959 112 ntBASIC-1.49□□□□□ -2.65
LIMS3P0CW19 Y_RNA.210-201ENST00000364161 110 ntBASIC-1.49□□□□□ -2.65
LIMS3P0CW19 RNA5SP192-201ENST00000364404 120 ntBASIC-1.49□□□□□ -2.65
LIMS3P0CW19 SNORD74.6-201ENST00000364796 70 ntBASIC-1.49□□□□□ -2.65
LIMS3P0CW19 Y_RNA.298-201ENST00000364960 107 ntBASIC-1.49□□□□□ -2.65
LIMS3P0CW19 MIR34C-201ENST00000384831 77 ntBASIC-1.49□□□□□ -2.65
LIMS3P0CW19 RNU6-243P-201ENST00000391140 107 ntBASIC-1.49□□□□□ -2.65
LIMS3P0CW19 SCARNA18B-201ENST00000458806 135 ntBASIC-1.49□□□□□ -2.65
LIMS3P0CW19 Y_RNA.437-201ENST00000384113 113 ntBASIC-1.5□□□□□ -2.65
LIMS3P0CW19 MIR517B-201ENST00000385102 67 ntBASIC-1.5□□□□□ -2.65
LIMS3P0CW19 MIR3165-201ENST00000579874 75 ntBASIC-1.5□□□□□ -2.65
LIMS3P0CW19 RNU6-1057P-201ENST00000517162 102 ntBASIC-1.51□□□□□ -2.65
LIMS3P0CW19 AC140658.3-201ENST00000567603 271 ntBASIC-1.51□□□□□ -2.65
LIMS3P0CW19 MIR6854-201ENST00000614935 69 ntBASIC-1.51□□□□□ -2.65
LIMS3P0CW19 Y_RNA.58-201ENST00000362807 102 ntBASIC-1.52□□□□□ -2.65
LIMS3P0CW19 RNY3P1-201ENST00000365085 102 ntBASIC-1.52□□□□□ -2.65
LIMS3P0CW19 Y_RNA.495-201ENST00000384435 112 ntBASIC-1.52□□□□□ -2.65
LIMS3P0CW19 Y_RNA.601-201ENST00000410500 113 ntBASIC-1.52□□□□□ -2.65
LIMS3P0CW19 AP000533.3-201ENST00000447704 118 ntBASIC-1.52□□□□□ -2.65
LIMS3P0CW19 Y_RNA.797-201ENST00000515977 94 ntBASIC-1.52□□□□□ -2.65
LIMS3P0CW19 Y_RNA.711-201ENST00000516993 102 ntBASIC-1.52□□□□□ -2.65
LIMS3P0CW19 MIR548O2-201ENST00000616090 70 ntBASIC-1.52□□□□□ -2.65
LIMS3P0CW19 U4.1-201ENST00000620349 87 ntBASIC-1.52□□□□□ -2.65
LIMS3P0CW19 SNORD36A-201ENST00000362874 73 ntBASIC-1.53□□□□□ -2.65
LIMS3P0CW19 Y_RNA.521-201ENST00000384560 114 ntBASIC-1.53□□□□□ -2.65
LIMS3P0CW19 Y_RNA.529-201ENST00000384586 119 ntBASIC-1.53□□□□□ -2.65
LIMS3P0CW19 Y_RNA.556-201ENST00000384677 113 ntBASIC-1.53□□□□□ -2.65
LIMS3P0CW19 AL161932.1-201ENST00000437408 146 ntBASIC-1.53□□□□□ -2.65
LIMS3P0CW19 SNORD57-201ENST00000448188 72 ntBASIC-1.53□□□□□ -2.65
LIMS3P0CW19 MTND3P22-201ENST00000510932 243 ntBASIC-1.53□□□□□ -2.65
LIMS3P0CW19 MIR3115-201ENST00000577915 68 ntBASIC-1.53□□□□□ -2.65
LIMS3P0CW19 MIR5704-201ENST00000584029 77 ntBASIC-1.53□□□□□ -2.65
LIMS3P0CW19 Y_RNA.12-201ENST00000362393 112 ntBASIC-1.54□□□□□ -2.66
LIMS3P0CW19 RNU6-1250P-201ENST00000391218 107 ntBASIC-1.54□□□□□ -2.66
LIMS3P0CW19 RNU6-431P-201ENST00000383874 107 ntBASIC-1.55□□□□□ -2.66
LIMS3P0CW19 Y_RNA.455-201ENST00000384230 98 ntBASIC-1.55□□□□□ -2.66
LIMS3P0CW19 RNU6-476P-201ENST00000384726 107 ntBASIC-1.55□□□□□ -2.66
LIMS3P0CW19 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC-1.55□□□□□ -2.66
LIMS3P0CW19 MIR4306-201ENST00000583390 91 ntBASIC-1.55□□□□□ -2.66
LIMS3P0CW19 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC-1.55□□□□□ -2.66
LIMS3P0CW19 MIR4320-201ENST00000636981 65 ntBASIC-1.55□□□□□ -2.66
LIMS3P0CW19 Y_RNA.121-201ENST00000363309 113 ntBASIC-1.56□□□□□ -2.66
LIMS3P0CW19 RNU4-32P-201ENST00000363404 141 ntBASIC-1.56□□□□□ -2.66
LIMS3P0CW19 Y_RNA.237-201ENST00000364439 102 ntBASIC-1.56□□□□□ -2.66
LIMS3P0CW19 Y_RNA.356-201ENST00000365475 113 ntBASIC-1.56□□□□□ -2.66
LIMS3P0CW19 RNU6-1157P-201ENST00000384456 106 ntBASIC-1.56□□□□□ -2.66
LIMS3P0CW19 SNORD64-201ENST00000386683 67 ntBASIC-1.56□□□□□ -2.66
LIMS3P0CW19 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC-1.56□□□□□ -2.66
LIMS3P0CW19 MIR369-201ENST00000362155 70 ntBASIC-1.57□□□□□ -2.66
LIMS3P0CW19 Y_RNA.28-201ENST00000362554 111 ntBASIC-1.57□□□□□ -2.66
LIMS3P0CW19 Y_RNA.57-201ENST00000362806 113 ntBASIC-1.57□□□□□ -2.66
LIMS3P0CW19 SNORD114-4-201ENST00000363962 75 ntBASIC-1.57□□□□□ -2.66
LIMS3P0CW19 Y_RNA.263-201ENST00000364659 114 ntBASIC-1.58□□□□□ -2.66
LIMS3P0CW19 RNU6-818P-201ENST00000364837 108 ntBASIC-1.58□□□□□ -2.66
LIMS3P0CW19 SNORD101-201ENST00000384027 73 ntBASIC-1.58□□□□□ -2.66
LIMS3P0CW19 MIR548E-201ENST00000408287 88 ntBASIC-1.58□□□□□ -2.66
LIMS3P0CW19 Y_RNA.793-201ENST00000411222 111 ntBASIC-1.58□□□□□ -2.66
LIMS3P0CW19 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC-1.58□□□□□ -2.66
LIMS3P0CW19 AC113195.1-201ENST00000579952 141 ntBASIC-1.58□□□□□ -2.66
LIMS3P0CW19 MIR382-201ENST00000637119 76 ntBASIC-1.58□□□□□ -2.66
LIMS3P0CW19 MIR409-201ENST00000362237 79 ntBASIC-1.59□□□□□ -2.66
LIMS3P0CW19 RNU6-957P-201ENST00000363652 99 ntBASIC-1.59□□□□□ -2.66
LIMS3P0CW19 Y_RNA.239-201ENST00000364444 113 ntBASIC-1.59□□□□□ -2.66
LIMS3P0CW19 SNORD42.2-201ENST00000365570 69 ntBASIC-1.59□□□□□ -2.66
LIMS3P0CW19 MIR147A-201ENST00000385079 72 ntBASIC-1.59□□□□□ -2.66
LIMS3P0CW19 RNU6-988P-201ENST00000519081 107 ntBASIC-1.59□□□□□ -2.66
LIMS3P0CW19 snoR1.1-201ENST00000628177 80 ntBASIC-1.59□□□□□ -2.66
LIMS3P0CW19 MIR335-201ENST00000362173 94 ntBASIC-1.6□□□□□ -2.67
LIMS3P0CW19 Y_RNA.283-201ENST00000364798 112 ntBASIC-1.6□□□□□ -2.67
LIMS3P0CW19 Y_RNA.353-201ENST00000365440 108 ntBASIC-1.6□□□□□ -2.67
LIMS3P0CW19 MIR582-201ENST00000365731 98 ntBASIC-1.6□□□□□ -2.67
LIMS3P0CW19 RNU6-1104P-201ENST00000384723 104 ntBASIC-1.6□□□□□ -2.67
LIMS3P0CW19 RNA5SP476-201ENST00000516613 103 ntBASIC-1.6□□□□□ -2.67
LIMS3P0CW19 RNU6-521P-201ENST00000516663 105 ntBASIC-1.6□□□□□ -2.67
LIMS3P0CW19 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC-1.6□□□□□ -2.67
LIMS3P0CW19 RNU6-664P-201ENST00000362381 107 ntBASIC-1.61□□□□□ -2.67
LIMS3P0CW19 Y_RNA.173-201ENST00000363776 113 ntBASIC-1.62□□□□□ -2.67
Retrieved 100 of 98,524 protein–RNA pairs in 213.1 ms