Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 SNORA40.13-201ENST00000516379 120 ntBASIC0.86□□□□□ -2.27
LMX1BO60663 MIR5000-201ENST00000577717 103 ntBASIC0.86□□□□□ -2.27
LMX1BO60663 MIR4439-201ENST00000583746 80 ntBASIC0.86□□□□□ -2.27
LMX1BO60663 RNU6-86P-201ENST00000606534 107 ntBASIC0.86□□□□□ -2.27
LMX1BO60663 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.86□□□□□ -2.27
LMX1BO60663 RNA5SP325-201ENST00000363756 130 ntBASIC0.85□□□□□ -2.27
LMX1BO60663 RNU4-38P-201ENST00000364472 129 ntBASIC0.85□□□□□ -2.27
LMX1BO60663 Y_RNA.567-201ENST00000384736 106 ntBASIC0.85□□□□□ -2.27
LMX1BO60663 RNU7-102P-201ENST00000458948 62 ntBASIC0.85□□□□□ -2.27
LMX1BO60663 RNU6-1194P-201ENST00000516208 104 ntBASIC0.85□□□□□ -2.27
LMX1BO60663 RNU6-765P-201ENST00000516916 99 ntBASIC0.85□□□□□ -2.27
LMX1BO60663 RNU6-850P-201ENST00000516934 103 ntBASIC0.85□□□□□ -2.27
LMX1BO60663 AC096720.1-201ENST00000604441 183 ntBASIC0.85□□□□□ -2.27
LMX1BO60663 MIR6857-201ENST00000613267 93 ntBASIC0.85□□□□□ -2.27
LMX1BO60663 MIR1-1-201ENST00000362147 71 ntBASIC0.84□□□□□ -2.27
LMX1BO60663 Y_RNA.290-201ENST00000364879 114 ntBASIC0.84□□□□□ -2.27
LMX1BO60663 RNU6-1335P-201ENST00000365426 107 ntBASIC0.84□□□□□ -2.27
LMX1BO60663 RNU6-49P-201ENST00000384256 107 ntBASIC0.84□□□□□ -2.27
LMX1BO60663 RNU6-813P-201ENST00000384691 107 ntBASIC0.84□□□□□ -2.27
LMX1BO60663 MIR938-201ENST00000401216 83 ntBASIC0.84□□□□□ -2.27
LMX1BO60663 RNU6-994P-201ENST00000410507 111 ntBASIC0.84□□□□□ -2.27
LMX1BO60663 SPINT5P-201ENST00000448174 155 ntBASIC0.84□□□□□ -2.27
LMX1BO60663 Y_RNA.694-201ENST00000516677 117 ntBASIC0.84□□□□□ -2.27
LMX1BO60663 RNA5SP170-201ENST00000517150 101 ntBASIC0.84□□□□□ -2.27
LMX1BO60663 AC103810.9-201ENST00000606688 112 ntBASIC0.84□□□□□ -2.27
LMX1BO60663 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.84□□□□□ -2.28
LMX1BO60663 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.83□□□□□ -2.28
LMX1BO60663 RNU4-58P-201ENST00000363192 141 ntBASIC0.83□□□□□ -2.28
LMX1BO60663 RNU6-571P-201ENST00000384128 107 ntBASIC0.83□□□□□ -2.28
LMX1BO60663 SNORD38.2-201ENST00000384470 69 ntBASIC0.83□□□□□ -2.28
LMX1BO60663 SNORA72.6-201ENST00000384520 129 ntBASIC0.83□□□□□ -2.28
LMX1BO60663 MIR100-201ENST00000385259 80 ntBASIC0.83□□□□□ -2.28
LMX1BO60663 SNORD100-201ENST00000408573 76 ntBASIC0.83□□□□□ -2.28
LMX1BO60663 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.83□□□□□ -2.28
LMX1BO60663 RNU6-1110P-201ENST00000516462 101 ntBASIC0.83□□□□□ -2.28
LMX1BO60663 MIR5582-201ENST00000579697 68 ntBASIC0.83□□□□□ -2.28
LMX1BO60663 AC103810.7-201ENST00000607821 91 ntBASIC0.83□□□□□ -2.28
LMX1BO60663 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.83□□□□□ -2.28
LMX1BO60663 Y_RNA.205-201ENST00000364128 113 ntBASIC0.82□□□□□ -2.28
LMX1BO60663 RNA5SP245-201ENST00000364239 121 ntBASIC0.82□□□□□ -2.28
LMX1BO60663 RNY1P7-201ENST00000384743 110 ntBASIC0.82□□□□□ -2.28
LMX1BO60663 MIR181B2-201ENST00000385004 89 ntBASIC0.82□□□□□ -2.28
LMX1BO60663 U7.7-201ENST00000459276 60 ntBASIC0.82□□□□□ -2.28
LMX1BO60663 RNU7-106P-201ENST00000459514 67 ntBASIC0.82□□□□□ -2.28
LMX1BO60663 TRAJ51-201ENST00000504127 63 ntBASIC0.82□□□□□ -2.28
LMX1BO60663 RNU6-977P-201ENST00000516411 103 ntBASIC0.82□□□□□ -2.28
LMX1BO60663 RNU6-448P-201ENST00000517052 107 ntBASIC0.82□□□□□ -2.28
LMX1BO60663 MTND5P40-201ENST00000559945 246 ntBASIC0.82□□□□□ -2.28
LMX1BO60663 U7.3-201ENST00000616123 62 ntBASIC0.82□□□□□ -2.28
LMX1BO60663 MALAT1.1-201ENST00000618249 95 ntBASIC0.82□□□□□ -2.28
LMX1BO60663 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.81□□□□□ -2.28
LMX1BO60663 MIR373-201ENST00000362273 69 ntBASIC0.81□□□□□ -2.28
LMX1BO60663 Y_RNA.190-201ENST00000363964 101 ntBASIC0.81□□□□□ -2.28
LMX1BO60663 RNU6-1131P-201ENST00000364955 107 ntBASIC0.81□□□□□ -2.28
LMX1BO60663 SNORD58A-201ENST00000383875 65 ntBASIC0.81□□□□□ -2.28
LMX1BO60663 RNU6-291P-201ENST00000384720 107 ntBASIC0.81□□□□□ -2.28
LMX1BO60663 MIR520F-201ENST00000384824 87 ntBASIC0.81□□□□□ -2.28
LMX1BO60663 MIR200A-201ENST00000384875 90 ntBASIC0.81□□□□□ -2.28
LMX1BO60663 MIR532-201ENST00000385025 91 ntBASIC0.81□□□□□ -2.28
LMX1BO60663 SNORD89-201ENST00000390981 114 ntBASIC0.81□□□□□ -2.28
LMX1BO60663 RNA5SP436-201ENST00000516020 115 ntBASIC0.81□□□□□ -2.28
LMX1BO60663 RNU6-162P-201ENST00000516228 103 ntBASIC0.81□□□□□ -2.28
LMX1BO60663 CYP3A137P-201ENST00000562436 69 ntBASIC0.81□□□□□ -2.28
LMX1BO60663 AC025521.1-201ENST00000621624 286 ntBASIC0.81□□□□□ -2.28
LMX1BO60663 MIR2052-201ENST00000636055 55 ntBASIC0.81□□□□□ -2.28
LMX1BO60663 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.81□□□□□ -2.28
LMX1BO60663 Y_RNA.43-201ENST00000362670 111 ntBASIC0.8□□□□□ -2.28
LMX1BO60663 Y_RNA.56-201ENST00000362798 112 ntBASIC0.8□□□□□ -2.28
LMX1BO60663 RNU6-364P-201ENST00000384387 107 ntBASIC0.8□□□□□ -2.28
LMX1BO60663 RNU6-887P-201ENST00000410660 100 ntBASIC0.8□□□□□ -2.28
LMX1BO60663 Y_RNA.705-201ENST00000516862 110 ntBASIC0.8□□□□□ -2.28
LMX1BO60663 AL513043.2-201ENST00000573941 143 ntBASIC0.8□□□□□ -2.28
LMX1BO60663 RN7SL793P-201ENST00000583259 296 ntBASIC0.8□□□□□ -2.28
LMX1BO60663 SNORD36A-201ENST00000362874 73 ntBASIC0.79□□□□□ -2.28
LMX1BO60663 RNU6-1255P-201ENST00000363434 112 ntBASIC0.79□□□□□ -2.28
LMX1BO60663 SNORD114-24-201ENST00000365029 72 ntBASIC0.79□□□□□ -2.28
LMX1BO60663 Y_RNA.369-201ENST00000365568 117 ntBASIC0.79□□□□□ -2.28
LMX1BO60663 Y_RNA.536-201ENST00000384621 113 ntBASIC0.79□□□□□ -2.28
LMX1BO60663 MIR516A2-201ENST00000384888 90 ntBASIC0.79□□□□□ -2.28
LMX1BO60663 MIR516A1-201ENST00000385033 90 ntBASIC0.79□□□□□ -2.28
LMX1BO60663 SNORD105-201ENST00000386910 85 ntBASIC0.79□□□□□ -2.28
LMX1BO60663 RNU1-119P-201ENST00000391122 165 ntBASIC0.79□□□□□ -2.28
LMX1BO60663 RNU6-972P-201ENST00000391208 107 ntBASIC0.79□□□□□ -2.28
LMX1BO60663 RNY4P30-201ENST00000410216 95 ntBASIC0.79□□□□□ -2.28
LMX1BO60663 SNORD63B-201ENST00000411005 70 ntBASIC0.79□□□□□ -2.28
LMX1BO60663 AC092628.1-201ENST00000436250 252 ntBASIC0.79□□□□□ -2.28
LMX1BO60663 FABP5P4-201ENST00000437203 171 ntBASIC0.79□□□□□ -2.28
LMX1BO60663 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.79□□□□□ -2.28
LMX1BO60663 RNA5SP255-201ENST00000516370 107 ntBASIC0.79□□□□□ -2.28
LMX1BO60663 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC0.79□□□□□ -2.28
LMX1BO60663 uc_338.16-201ENST00000621804 95 ntBASIC0.79□□□□□ -2.28
LMX1BO60663 RNU6-1187P-201ENST00000364771 110 ntBASIC0.78□□□□□ -2.28
LMX1BO60663 RNY1P4-201ENST00000384595 115 ntBASIC0.78□□□□□ -2.28
LMX1BO60663 MIR216A-201ENST00000385063 110 ntBASIC0.78□□□□□ -2.28
LMX1BO60663 MIR520H-201ENST00000385126 88 ntBASIC0.78□□□□□ -2.28
LMX1BO60663 MIR519A1-201ENST00000385257 85 ntBASIC0.78□□□□□ -2.28
LMX1BO60663 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.78□□□□□ -2.28
LMX1BO60663 MIR942-201ENST00000401111 86 ntBASIC0.78□□□□□ -2.28
LMX1BO60663 AC067940.1-201ENST00000458411 300 ntBASIC0.78□□□□□ -2.28
LMX1BO60663 Y_RNA.697-201ENST00000516776 113 ntBASIC0.78□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 218.2 ms