Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 SCARNA17.3-201ENST00000516381 125 ntBASIC4.68□□□□□ -1.66
SENP3Q9H4L4 RNU6-579P-201ENST00000516879 102 ntBASIC4.68□□□□□ -1.66
SENP3Q9H4L4 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC4.68□□□□□ -1.66
SENP3Q9H4L4 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
SENP3Q9H4L4 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC4.67□□□□□ -1.66
SENP3Q9H4L4 MIR429-201ENST00000362106 83 ntBASIC4.67□□□□□ -1.66
SENP3Q9H4L4 RNA5SP247-201ENST00000411181 105 ntBASIC4.67□□□□□ -1.66
SENP3Q9H4L4 AC090617.8-201ENST00000623339 167 ntBASIC4.67□□□□□ -1.66
SENP3Q9H4L4 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC4.67□□□□□ -1.66
SENP3Q9H4L4 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SENP3Q9H4L4 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC4.66□□□□□ -1.66
SENP3Q9H4L4 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
SENP3Q9H4L4 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC4.66□□□□□ -1.66
SENP3Q9H4L4 RNU7-56P-201ENST00000458744 62 ntBASIC4.66□□□□□ -1.66
SENP3Q9H4L4 AC008413.1-201ENST00000511864 177 ntBASIC4.66□□□□□ -1.66
SENP3Q9H4L4 MIR548AG1-201ENST00000579932 66 ntBASIC4.66□□□□□ -1.66
SENP3Q9H4L4 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC4.66□□□□□ -1.66
SENP3Q9H4L4 MIR582-201ENST00000365731 98 ntBASIC4.65□□□□□ -1.67
SENP3Q9H4L4 RNU6-439P-201ENST00000384188 106 ntBASIC4.65□□□□□ -1.67
SENP3Q9H4L4 RNA5SP450-201ENST00000411206 102 ntBASIC4.65□□□□□ -1.67
SENP3Q9H4L4 MIR2682-201ENST00000580305 110 ntBASIC4.65□□□□□ -1.67
SENP3Q9H4L4 AL359821.1-201ENST00000605519 182 ntBASIC4.65□□□□□ -1.67
SENP3Q9H4L4 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC4.65□□□□□ -1.67
SENP3Q9H4L4 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
SENP3Q9H4L4 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
SENP3Q9H4L4 SNORD74.4-201ENST00000364129 80 ntBASIC4.64□□□□□ -1.67
SENP3Q9H4L4 SNORA67.3-201ENST00000384366 140 ntBASIC4.64□□□□□ -1.67
SENP3Q9H4L4 SNORD111-201ENST00000408139 94 ntBASIC4.64□□□□□ -1.67
SENP3Q9H4L4 RNU4-47P-201ENST00000410876 114 ntBASIC4.64□□□□□ -1.67
SENP3Q9H4L4 RNU7-151P-201ENST00000516930 53 ntBASIC4.64□□□□□ -1.67
SENP3Q9H4L4 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
SENP3Q9H4L4 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC4.63□□□□□ -1.67
SENP3Q9H4L4 MIR1255B2-201ENST00000408618 67 ntBASIC4.63□□□□□ -1.67
SENP3Q9H4L4 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
SENP3Q9H4L4 AC093010.3-201ENST00000570269 15214 ntBASIC4.63□□□□□ -1.67
SENP3Q9H4L4 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC4.62□□□□□ -1.67
SENP3Q9H4L4 RNU6-133P-201ENST00000383989 107 ntBASIC4.62□□□□□ -1.67
SENP3Q9H4L4 MIR708-201ENST00000390708 88 ntBASIC4.62□□□□□ -1.67
SENP3Q9H4L4 EEF1A1P41-201ENST00000414667 207 ntBASIC4.62□□□□□ -1.67
SENP3Q9H4L4 AL591806.2-201ENST00000433122 173 ntBASIC4.62□□□□□ -1.67
SENP3Q9H4L4 AC015712.3-201ENST00000559380 164 ntBASIC4.62□□□□□ -1.67
SENP3Q9H4L4 MIR5047-201ENST00000579212 100 ntBASIC4.62□□□□□ -1.67
SENP3Q9H4L4 XIST_intron.1-201ENST00000619444 68 ntBASIC4.62□□□□□ -1.67
SENP3Q9H4L4 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
SENP3Q9H4L4 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
SENP3Q9H4L4 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
SENP3Q9H4L4 AL021368.2-201ENST00000606125 5352 ntBASIC4.61□□□□□ -1.67
SENP3Q9H4L4 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC4.61□□□□□ -1.67
SENP3Q9H4L4 CPD-202ENST00000543464 4007 ntTSL 2 BASIC4.61□□□□□ -1.67
SENP3Q9H4L4 MIR504-201ENST00000385065 83 ntBASIC4.6□□□□□ -1.67
SENP3Q9H4L4 MIR548E-201ENST00000408287 88 ntBASIC4.6□□□□□ -1.67
SENP3Q9H4L4 RNA5SP270-201ENST00000411361 118 ntBASIC4.6□□□□□ -1.67
SENP3Q9H4L4 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
SENP3Q9H4L4 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC4.6□□□□□ -1.67
SENP3Q9H4L4 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
SENP3Q9H4L4 AC080100.1-201ENST00000624239 5356 ntBASIC4.59□□□□□ -1.67
SENP3Q9H4L4 RNU6-945P-201ENST00000383947 107 ntBASIC4.59□□□□□ -1.67
SENP3Q9H4L4 MIR652-201ENST00000385278 98 ntBASIC4.59□□□□□ -1.67
SENP3Q9H4L4 SNORD67-201ENST00000390833 111 ntBASIC4.59□□□□□ -1.67
SENP3Q9H4L4 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC4.58□□□□□ -1.68
SENP3Q9H4L4 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC4.58□□□□□ -1.68
SENP3Q9H4L4 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
SENP3Q9H4L4 RNU6-828P-201ENST00000364876 107 ntBASIC4.58□□□□□ -1.68
SENP3Q9H4L4 SNORD6-201ENST00000365444 73 ntBASIC4.58□□□□□ -1.68
SENP3Q9H4L4 snoU13.26-201ENST00000459452 105 ntBASIC4.58□□□□□ -1.68
SENP3Q9H4L4 AC023827.1-201ENST00000569247 97 ntBASIC4.58□□□□□ -1.68
SENP3Q9H4L4 U6.98-201ENST00000637157 84 ntBASIC4.58□□□□□ -1.68
SENP3Q9H4L4 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC4.58□□□□□ -1.68
SENP3Q9H4L4 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC4.58□□□□□ -1.68
SENP3Q9H4L4 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
SENP3Q9H4L4 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC4.57□□□□□ -1.68
SENP3Q9H4L4 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SENP3Q9H4L4 SNORA7.1-201ENST00000363750 139 ntBASIC4.57□□□□□ -1.68
SENP3Q9H4L4 RNU6-458P-201ENST00000384179 107 ntBASIC4.57□□□□□ -1.68
SENP3Q9H4L4 U6.58-201ENST00000613107 107 ntBASIC4.57□□□□□ -1.68
SENP3Q9H4L4 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SENP3Q9H4L4 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
SENP3Q9H4L4 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC4.55□□□□□ -1.68
SENP3Q9H4L4 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SENP3Q9H4L4 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
SENP3Q9H4L4 AC244669.1-204ENST00000621564 178 ntBASIC4.55□□□□□ -1.68
SENP3Q9H4L4 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC4.55□□□□□ -1.68
SENP3Q9H4L4 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
SENP3Q9H4L4 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
SENP3Q9H4L4 MIR93-201ENST00000385024 80 ntBASIC4.54□□□□□ -1.68
SENP3Q9H4L4 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC4.54□□□□□ -1.68
SENP3Q9H4L4 SNORA70B-201ENST00000384210 135 ntBASIC4.53□□□□□ -1.68
SENP3Q9H4L4 uc_338.1-201ENST00000612113 180 ntBASIC4.53□□□□□ -1.68
SENP3Q9H4L4 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
SENP3Q9H4L4 MAPK10-266ENST00000641066 6555 ntBASIC4.52□□□□□ -1.69
SENP3Q9H4L4 MIR516B1-201ENST00000385211 90 ntBASIC4.52□□□□□ -1.69
SENP3Q9H4L4 MIR548H4-201ENST00000408689 111 ntBASIC4.52□□□□□ -1.69
SENP3Q9H4L4 RNA5SP184-201ENST00000411071 108 ntBASIC4.52□□□□□ -1.69
SENP3Q9H4L4 AC012493.3-201ENST00000604494 112 ntBASIC4.52□□□□□ -1.69
SENP3Q9H4L4 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC4.52□□□□□ -1.69
SENP3Q9H4L4 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SENP3Q9H4L4 MIR448-201ENST00000362131 111 ntBASIC4.51□□□□□ -1.69
SENP3Q9H4L4 SNORA71.1-201ENST00000364523 117 ntBASIC4.51□□□□□ -1.69
SENP3Q9H4L4 SNORA6-201ENST00000384033 151 ntBASIC4.51□□□□□ -1.69
SENP3Q9H4L4 MIR644A-201ENST00000385262 94 ntBASIC4.51□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms