Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 Y_RNA.73-201ENST00000362910 113 ntBASIC1.78□□□□□ -2.12
USHBP1Q8N6Y0 RNU6-580P-201ENST00000365159 107 ntBASIC1.78□□□□□ -2.12
USHBP1Q8N6Y0 RNU6-497P-201ENST00000365316 104 ntBASIC1.78□□□□□ -2.12
USHBP1Q8N6Y0 RNU6-1276P-201ENST00000365372 104 ntBASIC1.78□□□□□ -2.12
USHBP1Q8N6Y0 MIR518E-201ENST00000385252 88 ntBASIC1.78□□□□□ -2.12
USHBP1Q8N6Y0 RNU6-1275P-201ENST00000391087 107 ntBASIC1.78□□□□□ -2.12
USHBP1Q8N6Y0 Y_RNA.609-201ENST00000410669 89 ntBASIC1.78□□□□□ -2.12
USHBP1Q8N6Y0 RNA5SP61-201ENST00000516453 100 ntBASIC1.78□□□□□ -2.12
USHBP1Q8N6Y0 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.78□□□□□ -2.12
USHBP1Q8N6Y0 AL513043.2-201ENST00000573941 143 ntBASIC1.78□□□□□ -2.12
USHBP1Q8N6Y0 AC090897.1-201ENST00000580909 226 ntBASIC1.78□□□□□ -2.12
USHBP1Q8N6Y0 Y_RNA.119-201ENST00000363301 96 ntBASIC1.77□□□□□ -2.13
USHBP1Q8N6Y0 RNA5SP133-201ENST00000363368 119 ntBASIC1.77□□□□□ -2.13
USHBP1Q8N6Y0 SNORD114-27-201ENST00000363766 70 ntBASIC1.77□□□□□ -2.13
USHBP1Q8N6Y0 MIR5588-201ENST00000581890 63 ntBASIC1.77□□□□□ -2.13
USHBP1Q8N6Y0 MIR8066-201ENST00000617280 78 ntBASIC1.77□□□□□ -2.13
USHBP1Q8N6Y0 U6.109-201ENST00000636749 87 ntBASIC1.77□□□□□ -2.13
USHBP1Q8N6Y0 AL161722.3-201ENST00000605789 2983 ntBASIC1.77□□□□□ -2.13
USHBP1Q8N6Y0 Y_RNA.191-201ENST00000363972 113 ntBASIC1.76□□□□□ -2.13
USHBP1Q8N6Y0 RNU6-979P-201ENST00000383896 107 ntBASIC1.76□□□□□ -2.13
USHBP1Q8N6Y0 MIR934-201ENST00000401241 83 ntBASIC1.76□□□□□ -2.13
USHBP1Q8N6Y0 AL161932.1-201ENST00000437408 146 ntBASIC1.76□□□□□ -2.13
USHBP1Q8N6Y0 MIR18B-201ENST00000454574 71 ntBASIC1.76□□□□□ -2.13
USHBP1Q8N6Y0 MIR4452-201ENST00000583004 71 ntBASIC1.76□□□□□ -2.13
USHBP1Q8N6Y0 MIR3660-201ENST00000584845 100 ntBASIC1.76□□□□□ -2.13
USHBP1Q8N6Y0 MIR6078-201ENST00000611069 100 ntBASIC1.76□□□□□ -2.13
USHBP1Q8N6Y0 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.75□□□□□ -2.13
USHBP1Q8N6Y0 RNU6-654P-201ENST00000364373 107 ntBASIC1.75□□□□□ -2.13
USHBP1Q8N6Y0 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC1.75□□□□□ -2.13
USHBP1Q8N6Y0 RNU1-78P-201ENST00000391248 165 ntBASIC1.75□□□□□ -2.13
USHBP1Q8N6Y0 AC025521.1-201ENST00000621624 286 ntBASIC1.75□□□□□ -2.13
USHBP1Q8N6Y0 MIR3202-2-201ENST00000635980 79 ntBASIC1.75□□□□□ -2.13
USHBP1Q8N6Y0 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC1.75□□□□□ -2.13
USHBP1Q8N6Y0 AC008163.1-202ENST00000636004 2889 ntBASIC1.74□□□□□ -2.13
USHBP1Q8N6Y0 RNU6-633P-201ENST00000362612 103 ntBASIC1.74□□□□□ -2.13
USHBP1Q8N6Y0 Y_RNA.426-201ENST00000384068 113 ntBASIC1.74□□□□□ -2.13
USHBP1Q8N6Y0 RNU6-571P-201ENST00000384128 107 ntBASIC1.74□□□□□ -2.13
USHBP1Q8N6Y0 SNORA40.6-201ENST00000391153 128 ntBASIC1.74□□□□□ -2.13
USHBP1Q8N6Y0 RNU6-165P-201ENST00000517170 99 ntBASIC1.74□□□□□ -2.13
USHBP1Q8N6Y0 AL512310.8-201ENST00000550183 120 ntBASIC1.74□□□□□ -2.13
USHBP1Q8N6Y0 AC020891.4-201ENST00000605745 93 ntBASIC1.74□□□□□ -2.13
USHBP1Q8N6Y0 uc_338.6-201ENST00000613544 171 ntBASIC1.74□□□□□ -2.13
USHBP1Q8N6Y0 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.73□□□□□ -2.13
USHBP1Q8N6Y0 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.73□□□□□ -2.13
USHBP1Q8N6Y0 RNU6-509P-201ENST00000363519 107 ntBASIC1.73□□□□□ -2.13
USHBP1Q8N6Y0 RNU6-1124P-201ENST00000384169 107 ntBASIC1.73□□□□□ -2.13
USHBP1Q8N6Y0 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.73□□□□□ -2.13
USHBP1Q8N6Y0 RNU6-1054P-201ENST00000411293 104 ntBASIC1.73□□□□□ -2.13
USHBP1Q8N6Y0 SNRPGP12-201ENST00000449481 213 ntBASIC1.73□□□□□ -2.13
USHBP1Q8N6Y0 RNU7-171P-201ENST00000459581 62 ntBASIC1.73□□□□□ -2.13
USHBP1Q8N6Y0 RNU6-850P-201ENST00000516934 103 ntBASIC1.73□□□□□ -2.13
USHBP1Q8N6Y0 MIR4491-201ENST00000581087 68 ntBASIC1.73□□□□□ -2.13
USHBP1Q8N6Y0 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC1.73□□□□□ -2.13
USHBP1Q8N6Y0 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
USHBP1Q8N6Y0 SNORD93-201ENST00000408813 74 ntBASIC1.72□□□□□ -2.13
USHBP1Q8N6Y0 RNA5SP95-201ENST00000410319 137 ntBASIC1.72□□□□□ -2.13
USHBP1Q8N6Y0 Y_RNA.611-201ENST00000410682 108 ntBASIC1.72□□□□□ -2.13
USHBP1Q8N6Y0 MIR548BB-201ENST00000626714 66 ntBASIC1.72□□□□□ -2.13
USHBP1Q8N6Y0 Y_RNA.57-201ENST00000362806 113 ntBASIC1.71□□□□□ -2.14
USHBP1Q8N6Y0 RNU4-83P-201ENST00000410863 133 ntBASIC1.71□□□□□ -2.14
USHBP1Q8N6Y0 BX276092.1-201ENST00000427368 251 ntBASIC1.71□□□□□ -2.14
USHBP1Q8N6Y0 RNU6-638P-201ENST00000516582 104 ntBASIC1.71□□□□□ -2.14
USHBP1Q8N6Y0 MIR4422-201ENST00000581938 83 ntBASIC1.71□□□□□ -2.14
USHBP1Q8N6Y0 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.71□□□□□ -2.14
USHBP1Q8N6Y0 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.71□□□□□ -2.14
USHBP1Q8N6Y0 RNU6-228P-201ENST00000362700 106 ntBASIC1.7□□□□□ -2.14
USHBP1Q8N6Y0 MIR4666B-201ENST00000578142 81 ntBASIC1.7□□□□□ -2.14
USHBP1Q8N6Y0 MIR4285-201ENST00000581001 85 ntBASIC1.7□□□□□ -2.14
USHBP1Q8N6Y0 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC1.7□□□□□ -2.14
USHBP1Q8N6Y0 RNU4-58P-201ENST00000363192 141 ntBASIC1.69□□□□□ -2.14
USHBP1Q8N6Y0 RNU1-36P-201ENST00000365130 165 ntBASIC1.69□□□□□ -2.14
USHBP1Q8N6Y0 MIR1255A-201ENST00000408338 113 ntBASIC1.69□□□□□ -2.14
USHBP1Q8N6Y0 RNU6-519P-201ENST00000410590 108 ntBASIC1.69□□□□□ -2.14
USHBP1Q8N6Y0 RPS27P16-201ENST00000425758 201 ntBASIC1.69□□□□□ -2.14
USHBP1Q8N6Y0 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.69□□□□□ -2.14
USHBP1Q8N6Y0 SNORD113.3-201ENST00000364630 78 ntBASIC1.68□□□□□ -2.14
USHBP1Q8N6Y0 RNU6-787P-201ENST00000384032 107 ntBASIC1.68□□□□□ -2.14
USHBP1Q8N6Y0 Y_RNA.588-201ENST00000391254 102 ntBASIC1.68□□□□□ -2.14
USHBP1Q8N6Y0 AC048334.1-201ENST00000477975 159 ntBASIC1.68□□□□□ -2.14
USHBP1Q8N6Y0 RN7SKP88-201ENST00000516847 250 ntBASIC1.68□□□□□ -2.14
USHBP1Q8N6Y0 7SK.8-201ENST00000612110 250 ntBASIC1.68□□□□□ -2.14
USHBP1Q8N6Y0 7SK.11-201ENST00000615477 250 ntBASIC1.68□□□□□ -2.14
USHBP1Q8N6Y0 7SK.13-201ENST00000622040 250 ntBASIC1.68□□□□□ -2.14
USHBP1Q8N6Y0 AC006160.2-201ENST00000637708 154 ntBASIC1.68□□□□□ -2.14
USHBP1Q8N6Y0 Y_RNA.330-201ENST00000365230 109 ntBASIC1.67□□□□□ -2.14
USHBP1Q8N6Y0 Y_RNA.437-201ENST00000384113 113 ntBASIC1.67□□□□□ -2.14
USHBP1Q8N6Y0 snoU13.18-201ENST00000459483 104 ntBASIC1.67□□□□□ -2.14
USHBP1Q8N6Y0 RNU6-531P-201ENST00000516694 104 ntBASIC1.67□□□□□ -2.14
USHBP1Q8N6Y0 SNORA25.16-201ENST00000516741 121 ntBASIC1.67□□□□□ -2.14
USHBP1Q8N6Y0 AC068338.1-201ENST00000565567 176 ntBASIC1.67□□□□□ -2.14
USHBP1Q8N6Y0 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC1.67□□□□□ -2.14
USHBP1Q8N6Y0 RMST_2.1-201ENST00000617263 136 ntBASIC1.67□□□□□ -2.14
USHBP1Q8N6Y0 MIR6767-201ENST00000637302 66 ntBASIC1.67□□□□□ -2.14
USHBP1Q8N6Y0 RNU6-403P-201ENST00000363163 104 ntBASIC1.66□□□□□ -2.14
USHBP1Q8N6Y0 RNU6-934P-201ENST00000365154 107 ntBASIC1.66□□□□□ -2.14
USHBP1Q8N6Y0 MIR519C-201ENST00000385053 87 ntBASIC1.66□□□□□ -2.14
USHBP1Q8N6Y0 RNU6ATAC6P-201ENST00000408132 126 ntBASIC1.66□□□□□ -2.14
USHBP1Q8N6Y0 Y_RNA.607-201ENST00000410597 98 ntBASIC1.66□□□□□ -2.14
USHBP1Q8N6Y0 RNU7-185P-201ENST00000459215 60 ntBASIC1.66□□□□□ -2.14
USHBP1Q8N6Y0 5S_rRNA.15-201ENST00000611169 127 ntBASIC1.66□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 195.7 ms