Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 SNORA31.14-201ENST00000516728 116 ntBASIC0.5□□□□□ -2.33
PDLIM3Q53GG5 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.5□□□□□ -2.33
PDLIM3Q53GG5 AC243829.6-201ENST00000612652 106 ntBASIC0.5□□□□□ -2.33
PDLIM3Q53GG5 uc_338.17-201ENST00000619633 179 ntBASIC0.5□□□□□ -2.33
PDLIM3Q53GG5 AP001340.1-201ENST00000624405 217 ntBASIC0.5□□□□□ -2.33
PDLIM3Q53GG5 RNU4-58P-201ENST00000363192 141 ntBASIC0.49□□□□□ -2.33
PDLIM3Q53GG5 SNORD114-10-201ENST00000363409 72 ntBASIC0.49□□□□□ -2.33
PDLIM3Q53GG5 RNU6-647P-201ENST00000364243 107 ntBASIC0.49□□□□□ -2.33
PDLIM3Q53GG5 Y_RNA.536-201ENST00000384621 113 ntBASIC0.49□□□□□ -2.33
PDLIM3Q53GG5 RNU6-291P-201ENST00000384720 107 ntBASIC0.49□□□□□ -2.33
PDLIM3Q53GG5 MT-TI-201ENST00000387365 69 ntBASIC0.49□□□□□ -2.33
PDLIM3Q53GG5 RNU6-1211P-201ENST00000459179 105 ntBASIC0.49□□□□□ -2.33
PDLIM3Q53GG5 RNU6-781P-201ENST00000516377 101 ntBASIC0.49□□□□□ -2.33
PDLIM3Q53GG5 MIR4500-201ENST00000579472 76 ntBASIC0.49□□□□□ -2.33
PDLIM3Q53GG5 AC023932.2-201ENST00000603176 175 ntBASIC0.49□□□□□ -2.33
PDLIM3Q53GG5 U7.2-201ENST00000607576 63 ntBASIC0.49□□□□□ -2.33
PDLIM3Q53GG5 AC092634.7-201ENST00000621022 103 ntBASIC0.49□□□□□ -2.33
PDLIM3Q53GG5 SNORA2A-201ENST00000383885 135 ntBASIC0.48□□□□□ -2.33
PDLIM3Q53GG5 RNA5SP25-201ENST00000410815 110 ntBASIC0.48□□□□□ -2.33
PDLIM3Q53GG5 MTND4LP9-201ENST00000427694 174 ntBASIC0.48□□□□□ -2.33
PDLIM3Q53GG5 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC0.48□□□□□ -2.33
PDLIM3Q53GG5 MIR4802-201ENST00000581881 80 ntBASIC0.48□□□□□ -2.33
PDLIM3Q53GG5 AC067863.3-201ENST00000624172 122 ntBASIC0.48□□□□□ -2.33
PDLIM3Q53GG5 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.47□□□□□ -2.33
PDLIM3Q53GG5 SNORA63.5-201ENST00000363548 123 ntBASIC0.47□□□□□ -2.33
PDLIM3Q53GG5 Y_RNA.528-201ENST00000384575 108 ntBASIC0.47□□□□□ -2.33
PDLIM3Q53GG5 MIR759-201ENST00000390224 91 ntBASIC0.47□□□□□ -2.33
PDLIM3Q53GG5 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC0.47□□□□□ -2.33
PDLIM3Q53GG5 Z95118.1-201ENST00000421372 247 ntBASIC0.47□□□□□ -2.33
PDLIM3Q53GG5 AL158147.1-201ENST00000443970 75 ntBASIC0.47□□□□□ -2.33
PDLIM3Q53GG5 RNU6-765P-201ENST00000516916 99 ntBASIC0.47□□□□□ -2.33
PDLIM3Q53GG5 RNA5SP94-201ENST00000516917 108 ntBASIC0.47□□□□□ -2.33
PDLIM3Q53GG5 SNORA25.18-201ENST00000607153 114 ntBASIC0.47□□□□□ -2.33
PDLIM3Q53GG5 RNA5SP245-201ENST00000364239 121 ntBASIC0.46□□□□□ -2.34
PDLIM3Q53GG5 RNA5SP517-201ENST00000364724 117 ntBASIC0.46□□□□□ -2.34
PDLIM3Q53GG5 Y_RNA.506-201ENST00000384494 102 ntBASIC0.46□□□□□ -2.34
PDLIM3Q53GG5 SNORA40-201ENST00000388090 126 ntBASIC0.46□□□□□ -2.34
PDLIM3Q53GG5 RNU6-1307P-201ENST00000391012 103 ntBASIC0.46□□□□□ -2.34
PDLIM3Q53GG5 RNU6-257P-201ENST00000410238 98 ntBASIC0.46□□□□□ -2.34
PDLIM3Q53GG5 AP003327.1-201ENST00000529684 127 ntBASIC0.46□□□□□ -2.34
PDLIM3Q53GG5 uc_338.16-201ENST00000621804 95 ntBASIC0.46□□□□□ -2.34
PDLIM3Q53GG5 RNA5SP499-201ENST00000363982 119 ntBASIC0.45□□□□□ -2.34
PDLIM3Q53GG5 Y_RNA.213-201ENST00000364178 111 ntBASIC0.45□□□□□ -2.34
PDLIM3Q53GG5 RNU6-865P-201ENST00000364772 107 ntBASIC0.45□□□□□ -2.34
PDLIM3Q53GG5 RNU4-45P-201ENST00000365469 141 ntBASIC0.45□□□□□ -2.34
PDLIM3Q53GG5 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.45□□□□□ -2.34
PDLIM3Q53GG5 RNU7-48P-201ENST00000458875 63 ntBASIC0.45□□□□□ -2.34
PDLIM3Q53GG5 RNU7-2P-201ENST00000516096 62 ntBASIC0.45□□□□□ -2.34
PDLIM3Q53GG5 Y_RNA.773-201ENST00000607168 90 ntBASIC0.45□□□□□ -2.34
PDLIM3Q53GG5 TUG1_4.1-201ENST00000619464 181 ntBASIC0.45□□□□□ -2.34
PDLIM3Q53GG5 Y_RNA.49-201ENST00000362714 112 ntBASIC0.44□□□□□ -2.34
PDLIM3Q53GG5 RNY1P2-201ENST00000364820 117 ntBASIC0.44□□□□□ -2.34
PDLIM3Q53GG5 Y_RNA.568-201ENST00000384742 113 ntBASIC0.44□□□□□ -2.34
PDLIM3Q53GG5 RNU6-735P-201ENST00000410612 107 ntBASIC0.44□□□□□ -2.34
PDLIM3Q53GG5 BX276092.1-201ENST00000427368 251 ntBASIC0.44□□□□□ -2.34
PDLIM3Q53GG5 SUMO1P3-201ENST00000439961 304 ntBASIC0.44□□□□□ -2.34
PDLIM3Q53GG5 RNU6-971P-201ENST00000516920 106 ntBASIC0.44□□□□□ -2.34
PDLIM3Q53GG5 MIR3163-201ENST00000581592 73 ntBASIC0.44□□□□□ -2.34
PDLIM3Q53GG5 MIR3133-201ENST00000583157 78 ntBASIC0.44□□□□□ -2.34
PDLIM3Q53GG5 RNU6-1229P-201ENST00000364295 107 ntBASIC0.43□□□□□ -2.34
PDLIM3Q53GG5 SNORD71-201ENST00000411292 86 ntBASIC0.43□□□□□ -2.34
PDLIM3Q53GG5 SNORA68.3-201ENST00000515906 83 ntBASIC0.43□□□□□ -2.34
PDLIM3Q53GG5 RNU6-1212P-201ENST00000517023 104 ntBASIC0.43□□□□□ -2.34
PDLIM3Q53GG5 AC087741.2-201ENST00000619415 172 ntBASIC0.43□□□□□ -2.34
PDLIM3Q53GG5 MIR1255B1-201ENST00000636325 63 ntBASIC0.43□□□□□ -2.34
PDLIM3Q53GG5 Y_RNA.98-201ENST00000363109 102 ntBASIC0.42□□□□□ -2.34
PDLIM3Q53GG5 SNORD18A-201ENST00000363753 72 ntBASIC0.42□□□□□ -2.34
PDLIM3Q53GG5 Y_RNA.174-201ENST00000363781 105 ntBASIC0.42□□□□□ -2.34
PDLIM3Q53GG5 Y_RNA.198-201ENST00000364013 98 ntBASIC0.42□□□□□ -2.34
PDLIM3Q53GG5 SNORD114-15-201ENST00000364687 72 ntBASIC0.42□□□□□ -2.34
PDLIM3Q53GG5 SNORD115-35-201ENST00000365122 82 ntBASIC0.42□□□□□ -2.34
PDLIM3Q53GG5 Y_RNA.525-201ENST00000384570 113 ntBASIC0.42□□□□□ -2.34
PDLIM3Q53GG5 MIR548I1-201ENST00000408810 149 ntBASIC0.42□□□□□ -2.34
PDLIM3Q53GG5 SNORA7.5-201ENST00000410672 110 ntBASIC0.42□□□□□ -2.34
PDLIM3Q53GG5 AL157398.1-201ENST00000452981 186 ntBASIC0.42□□□□□ -2.34
PDLIM3Q53GG5 AC025166.1-201ENST00000612411 163 ntBASIC0.42□□□□□ -2.34
PDLIM3Q53GG5 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.42□□□□□ -2.34
PDLIM3Q53GG5 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.41□□□□□ -2.34
PDLIM3Q53GG5 RNA5SP98-201ENST00000363158 137 ntBASIC0.41□□□□□ -2.34
PDLIM3Q53GG5 SNORA36.1-201ENST00000363424 132 ntBASIC0.41□□□□□ -2.34
PDLIM3Q53GG5 RNU4-67P-201ENST00000364569 141 ntBASIC0.41□□□□□ -2.34
PDLIM3Q53GG5 Y_RNA.328-201ENST00000365208 113 ntBASIC0.41□□□□□ -2.34
PDLIM3Q53GG5 SNORA8.2-201ENST00000384372 139 ntBASIC0.41□□□□□ -2.34
PDLIM3Q53GG5 RNA5SP136-201ENST00000410906 107 ntBASIC0.41□□□□□ -2.34
PDLIM3Q53GG5 RNU7-107P-201ENST00000459121 61 ntBASIC0.41□□□□□ -2.34
PDLIM3Q53GG5 RN7SKP12-201ENST00000516275 143 ntBASIC0.41□□□□□ -2.34
PDLIM3Q53GG5 RNU6-521P-201ENST00000516663 105 ntBASIC0.41□□□□□ -2.34
PDLIM3Q53GG5 RNU6-1234P-201ENST00000516877 103 ntBASIC0.41□□□□□ -2.34
PDLIM3Q53GG5 SNORA9.1-201ENST00000362412 131 ntBASIC0.4□□□□□ -2.35
PDLIM3Q53GG5 SNORD58C-201ENST00000365223 64 ntBASIC0.4□□□□□ -2.35
PDLIM3Q53GG5 RNU6-429P-201ENST00000384582 108 ntBASIC0.4□□□□□ -2.35
PDLIM3Q53GG5 MIRLET7F2-201ENST00000385277 83 ntBASIC0.4□□□□□ -2.35
PDLIM3Q53GG5 SNORA40.8-201ENST00000411034 126 ntBASIC0.4□□□□□ -2.35
PDLIM3Q53GG5 Y_RNA.630-201ENST00000411370 108 ntBASIC0.4□□□□□ -2.35
PDLIM3Q53GG5 AC114737.2-201ENST00000421583 173 ntBASIC0.4□□□□□ -2.35
PDLIM3Q53GG5 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.4□□□□□ -2.35
PDLIM3Q53GG5 RNU6-758P-201ENST00000516292 89 ntBASIC0.4□□□□□ -2.35
PDLIM3Q53GG5 MIR376B-201ENST00000614515 100 ntBASIC0.4□□□□□ -2.35
PDLIM3Q53GG5 MTND5P18-201ENST00000445624 1801 ntBASIC0.39□□□□□ -2.35
PDLIM3Q53GG5 MIR409-201ENST00000362237 79 ntBASIC0.39□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 169 ms