Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 RNU6-403P-201ENST00000363163 104 ntBASIC1.91□□□□□ -2.1
SOX4Q06945 Y_RNA.283-201ENST00000364798 112 ntBASIC1.91□□□□□ -2.1
SOX4Q06945 SNORD1A-201ENST00000364968 72 ntBASIC1.91□□□□□ -2.1
SOX4Q06945 Y_RNA.565-201ENST00000384719 101 ntBASIC1.91□□□□□ -2.1
SOX4Q06945 RNA5SP292-201ENST00000390974 118 ntBASIC1.91□□□□□ -2.1
SOX4Q06945 AC139453.2-201ENST00000487255 133 ntBASIC1.91□□□□□ -2.1
SOX4Q06945 RNU6-557P-201ENST00000516842 110 ntBASIC1.91□□□□□ -2.1
SOX4Q06945 AC019176.1-201ENST00000518519 225 ntBASIC1.91□□□□□ -2.1
SOX4Q06945 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.91□□□□□ -2.1
SOX4Q06945 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.91□□□□□ -2.1
SOX4Q06945 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.91□□□□□ -2.1
SOX4Q06945 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC1.9□□□□□ -2.1
SOX4Q06945 SNORA63.2-201ENST00000362603 126 ntBASIC1.9□□□□□ -2.11
SOX4Q06945 SNORD63B-201ENST00000411005 70 ntBASIC1.9□□□□□ -2.11
SOX4Q06945 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.9□□□□□ -2.11
SOX4Q06945 AL603825.1-201ENST00000438481 80 ntBASIC1.9□□□□□ -2.11
SOX4Q06945 SNORD13-201ENST00000459299 104 ntBASIC1.9□□□□□ -2.11
SOX4Q06945 AC079140.2-201ENST00000506193 142 ntBASIC1.9□□□□□ -2.11
SOX4Q06945 RNU6-75P-201ENST00000515944 104 ntBASIC1.9□□□□□ -2.11
SOX4Q06945 SNORA18.5-201ENST00000516616 101 ntBASIC1.9□□□□□ -2.11
SOX4Q06945 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.9□□□□□ -2.11
SOX4Q06945 RNA5SP190-201ENST00000365222 118 ntBASIC1.89□□□□□ -2.11
SOX4Q06945 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.89□□□□□ -2.11
SOX4Q06945 RNU6-466P-201ENST00000391224 103 ntBASIC1.89□□□□□ -2.11
SOX4Q06945 RNA5SP364-201ENST00000516938 78 ntBASIC1.89□□□□□ -2.11
SOX4Q06945 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.89□□□□□ -2.11
SOX4Q06945 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
SOX4Q06945 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
SOX4Q06945 RNU6-686P-201ENST00000364839 107 ntBASIC1.88□□□□□ -2.11
SOX4Q06945 RNU6-132P-201ENST00000383863 107 ntBASIC1.88□□□□□ -2.11
SOX4Q06945 SNORA25.15-201ENST00000516487 89 ntBASIC1.88□□□□□ -2.11
SOX4Q06945 MIR4419B-201ENST00000577260 68 ntBASIC1.88□□□□□ -2.11
SOX4Q06945 MIR3064-201ENST00000581130 66 ntBASIC1.88□□□□□ -2.11
SOX4Q06945 5S_rRNA.15-201ENST00000611169 127 ntBASIC1.88□□□□□ -2.11
SOX4Q06945 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.88□□□□□ -2.11
SOX4Q06945 FAS-AS1.1-201ENST00000615327 126 ntBASIC1.88□□□□□ -2.11
SOX4Q06945 MIRLET7A1-201ENST00000362295 80 ntBASIC1.87□□□□□ -2.11
SOX4Q06945 RNU6-161P-201ENST00000363051 106 ntBASIC1.87□□□□□ -2.11
SOX4Q06945 MIR30A-201ENST00000385092 71 ntBASIC1.87□□□□□ -2.11
SOX4Q06945 SNORD100-201ENST00000408573 76 ntBASIC1.87□□□□□ -2.11
SOX4Q06945 RNU7-185P-201ENST00000459215 60 ntBASIC1.87□□□□□ -2.11
SOX4Q06945 RNU6-1194P-201ENST00000516208 104 ntBASIC1.87□□□□□ -2.11
SOX4Q06945 MIR3664-201ENST00000579074 99 ntBASIC1.87□□□□□ -2.11
SOX4Q06945 SNORD92-201ENST00000585078 85 ntBASIC1.87□□□□□ -2.11
SOX4Q06945 AC104996.3-201ENST00000590718 94 ntBASIC1.87□□□□□ -2.11
SOX4Q06945 AC013244.2-201ENST00000603396 103 ntBASIC1.87□□□□□ -2.11
SOX4Q06945 AC023934.1-201ENST00000574529 2389 ntBASIC1.87□□□□□ -2.11
SOX4Q06945 MIR101-2-201ENST00000362195 79 ntBASIC1.86□□□□□ -2.11
SOX4Q06945 SNORD33-201ENST00000362761 85 ntBASIC1.86□□□□□ -2.11
SOX4Q06945 RNU6-957P-201ENST00000363652 99 ntBASIC1.86□□□□□ -2.11
SOX4Q06945 RNU6-1065P-201ENST00000384513 106 ntBASIC1.86□□□□□ -2.11
SOX4Q06945 MIR635-201ENST00000384830 98 ntBASIC1.86□□□□□ -2.11
SOX4Q06945 MIR548U-201ENST00000390728 81 ntBASIC1.86□□□□□ -2.11
SOX4Q06945 RNA5SP489-201ENST00000410986 109 ntBASIC1.86□□□□□ -2.11
SOX4Q06945 snoU13.21-201ENST00000459368 105 ntBASIC1.86□□□□□ -2.11
SOX4Q06945 RNU6-165P-201ENST00000517170 99 ntBASIC1.86□□□□□ -2.11
SOX4Q06945 MIR3937-201ENST00000580135 106 ntBASIC1.86□□□□□ -2.11
SOX4Q06945 SNORA25.9-201ENST00000365087 128 ntBASIC1.85□□□□□ -2.11
SOX4Q06945 Y_RNA.491-201ENST00000384417 107 ntBASIC1.85□□□□□ -2.11
SOX4Q06945 Y_RNA.536-201ENST00000384621 113 ntBASIC1.85□□□□□ -2.11
SOX4Q06945 Y_RNA.545-201ENST00000384652 105 ntBASIC1.85□□□□□ -2.11
SOX4Q06945 RNU6-380P-201ENST00000410207 107 ntBASIC1.85□□□□□ -2.11
SOX4Q06945 TRAJ51-201ENST00000504127 63 ntBASIC1.85□□□□□ -2.11
SOX4Q06945 RNU6-1108P-201ENST00000516308 104 ntBASIC1.85□□□□□ -2.11
SOX4Q06945 SNORA44.1-201ENST00000517031 108 ntBASIC1.85□□□□□ -2.11
SOX4Q06945 MIR4255-201ENST00000579351 72 ntBASIC1.85□□□□□ -2.11
SOX4Q06945 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.85□□□□□ -2.11
SOX4Q06945 MIRLET7F1-201ENST00000362202 87 ntBASIC1.84□□□□□ -2.11
SOX4Q06945 SUMO2P12-201ENST00000405924 140 ntBASIC1.84□□□□□ -2.11
SOX4Q06945 MIR1257-201ENST00000408490 117 ntBASIC1.84□□□□□ -2.11
SOX4Q06945 FGF7P7-201ENST00000514120 227 ntBASIC1.84□□□□□ -2.11
SOX4Q06945 Y_RNA.660-201ENST00000516002 120 ntBASIC1.84□□□□□ -2.11
SOX4Q06945 MIR548H5-201ENST00000580314 60 ntBASIC1.84□□□□□ -2.11
SOX4Q06945 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.84□□□□□ -2.12
SOX4Q06945 Y_RNA.13-201ENST00000362403 112 ntBASIC1.83□□□□□ -2.12
SOX4Q06945 RNU6ATAC6P-201ENST00000408132 126 ntBASIC1.83□□□□□ -2.12
SOX4Q06945 SNORD83.1-201ENST00000411362 77 ntBASIC1.83□□□□□ -2.12
SOX4Q06945 RNU7-195P-201ENST00000458793 62 ntBASIC1.83□□□□□ -2.12
SOX4Q06945 RNU7-10P-201ENST00000607194 63 ntBASIC1.83□□□□□ -2.12
SOX4Q06945 MIR6082-201ENST00000613604 109 ntBASIC1.83□□□□□ -2.12
SOX4Q06945 Y_RNA.788-201ENST00000622394 112 ntBASIC1.83□□□□□ -2.12
SOX4Q06945 VPS35-212ENST00000640313 141 ntTSL 5 BASIC1.83□□□□□ -2.12
SOX4Q06945 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
SOX4Q06945 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.82□□□□□ -2.12
SOX4Q06945 SNORD48-201ENST00000364953 64 ntBASIC1.82□□□□□ -2.12
SOX4Q06945 Y_RNA.330-201ENST00000365230 109 ntBASIC1.82□□□□□ -2.12
SOX4Q06945 MIR518E-201ENST00000385252 88 ntBASIC1.82□□□□□ -2.12
SOX4Q06945 AC108667.1-201ENST00000428618 249 ntBASIC1.82□□□□□ -2.12
SOX4Q06945 AL512310.8-201ENST00000550183 120 ntBASIC1.82□□□□□ -2.12
SOX4Q06945 AC012493.3-201ENST00000604494 112 ntBASIC1.82□□□□□ -2.12
SOX4Q06945 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
SOX4Q06945 Y_RNA.56-201ENST00000362798 112 ntBASIC1.81□□□□□ -2.12
SOX4Q06945 SNORD113.3-201ENST00000364630 78 ntBASIC1.81□□□□□ -2.12
SOX4Q06945 RNU6-934P-201ENST00000365154 107 ntBASIC1.81□□□□□ -2.12
SOX4Q06945 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.81□□□□□ -2.12
SOX4Q06945 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
SOX4Q06945 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
SOX4Q06945 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.8□□□□□ -2.12
SOX4Q06945 MIR519A1-201ENST00000385257 85 ntBASIC1.8□□□□□ -2.12
SOX4Q06945 SNORD77.2-201ENST00000391045 68 ntBASIC1.8□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 177.9 ms