Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 RNU6-1163P-201ENST00000364516 107 ntBASIC0.89□□□□□ -2.27
LMO4P61968 RNY1P2-201ENST00000364820 117 ntBASIC0.89□□□□□ -2.27
LMO4P61968 RNU6-294P-201ENST00000364999 102 ntBASIC0.89□□□□□ -2.27
LMO4P61968 Y_RNA.330-201ENST00000365230 109 ntBASIC0.89□□□□□ -2.27
LMO4P61968 SNORA2B-201ENST00000384583 137 ntBASIC0.89□□□□□ -2.27
LMO4P61968 RNU6-910P-201ENST00000390844 107 ntBASIC0.89□□□□□ -2.27
LMO4P61968 AC015818.7-201ENST00000428754 109 ntBASIC0.89□□□□□ -2.27
LMO4P61968 AC087499.7-201ENST00000441958 109 ntBASIC0.89□□□□□ -2.27
LMO4P61968 RNU6-162P-201ENST00000516228 103 ntBASIC0.89□□□□□ -2.27
LMO4P61968 RNA5SP404-201ENST00000517118 132 ntBASIC0.89□□□□□ -2.27
LMO4P61968 MIR4439-201ENST00000583746 80 ntBASIC0.89□□□□□ -2.27
LMO4P61968 U7.3-201ENST00000616123 62 ntBASIC0.89□□□□□ -2.27
LMO4P61968 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC0.89□□□□□ -2.27
LMO4P61968 MIR520E-201ENST00000384867 87 ntBASIC0.88□□□□□ -2.27
LMO4P61968 MIR548G-201ENST00000408442 89 ntBASIC0.88□□□□□ -2.27
LMO4P61968 Y_RNA.705-201ENST00000516862 110 ntBASIC0.88□□□□□ -2.27
LMO4P61968 RNU6-844P-201ENST00000517175 102 ntBASIC0.88□□□□□ -2.27
LMO4P61968 AC090897.1-201ENST00000580909 226 ntBASIC0.88□□□□□ -2.27
LMO4P61968 AC020891.4-201ENST00000605745 93 ntBASIC0.88□□□□□ -2.27
LMO4P61968 MIR7111-201ENST00000619751 72 ntBASIC0.88□□□□□ -2.27
LMO4P61968 U6.109-201ENST00000636749 87 ntBASIC0.88□□□□□ -2.27
LMO4P61968 HSBP1P2-201ENST00000299671 229 ntBASIC0.87□□□□□ -2.27
LMO4P61968 RNA5SP133-201ENST00000363368 119 ntBASIC0.87□□□□□ -2.27
LMO4P61968 RNU6-1244P-201ENST00000363614 108 ntBASIC0.87□□□□□ -2.27
LMO4P61968 RNU6-813P-201ENST00000384691 107 ntBASIC0.87□□□□□ -2.27
LMO4P61968 RNU6-887P-201ENST00000410660 100 ntBASIC0.87□□□□□ -2.27
LMO4P61968 SPINT5P-201ENST00000448174 155 ntBASIC0.87□□□□□ -2.27
LMO4P61968 AC036111.3-201ENST00000526389 112 ntBASIC0.87□□□□□ -2.27
LMO4P61968 SNORD114-21-201ENST00000606412 72 ntBASIC0.87□□□□□ -2.27
LMO4P61968 AC008163.1-202ENST00000636004 2889 ntBASIC0.86□□□□□ -2.27
LMO4P61968 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC0.86□□□□□ -2.27
LMO4P61968 SNORD38.2-201ENST00000384470 69 ntBASIC0.86□□□□□ -2.27
LMO4P61968 SNORD12-201ENST00000391002 90 ntBASIC0.86□□□□□ -2.27
LMO4P61968 Y_RNA.588-201ENST00000391254 102 ntBASIC0.86□□□□□ -2.27
LMO4P61968 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.86□□□□□ -2.27
LMO4P61968 SNORD83.1-201ENST00000411362 77 ntBASIC0.86□□□□□ -2.27
LMO4P61968 MIR18B-201ENST00000454574 71 ntBASIC0.86□□□□□ -2.27
LMO4P61968 RNU6-762P-201ENST00000517107 102 ntBASIC0.86□□□□□ -2.27
LMO4P61968 AC023827.1-201ENST00000569247 97 ntBASIC0.86□□□□□ -2.27
LMO4P61968 RNU6-90P-201ENST00000606352 106 ntBASIC0.86□□□□□ -2.27
LMO4P61968 RNU6-86P-201ENST00000606534 107 ntBASIC0.86□□□□□ -2.27
LMO4P61968 AC103810.7-201ENST00000607821 91 ntBASIC0.86□□□□□ -2.27
LMO4P61968 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC0.86□□□□□ -2.27
LMO4P61968 AC012676.2-201ENST00000619258 186 ntBASIC0.86□□□□□ -2.27
LMO4P61968 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC0.86□□□□□ -2.27
LMO4P61968 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC0.86□□□□□ -2.27
LMO4P61968 Y_RNA.96-201ENST00000363092 109 ntBASIC0.85□□□□□ -2.27
LMO4P61968 Y_RNA.118-201ENST00000363300 101 ntBASIC0.85□□□□□ -2.27
LMO4P61968 Y_RNA.119-201ENST00000363301 96 ntBASIC0.85□□□□□ -2.27
LMO4P61968 Y_RNA.173-201ENST00000363776 113 ntBASIC0.85□□□□□ -2.27
LMO4P61968 RNU1-124P-201ENST00000363861 145 ntBASIC0.85□□□□□ -2.27
LMO4P61968 SNORD73B-201ENST00000364394 72 ntBASIC0.85□□□□□ -2.27
LMO4P61968 SNORD113.3-201ENST00000364630 78 ntBASIC0.85□□□□□ -2.27
LMO4P61968 Y_RNA.558-201ENST00000384685 113 ntBASIC0.85□□□□□ -2.27
LMO4P61968 Y_RNA.567-201ENST00000384736 106 ntBASIC0.85□□□□□ -2.27
LMO4P61968 RNU6-972P-201ENST00000391208 107 ntBASIC0.85□□□□□ -2.27
LMO4P61968 SNORD93-201ENST00000408813 74 ntBASIC0.85□□□□□ -2.27
LMO4P61968 SNRPGP12-201ENST00000449481 213 ntBASIC0.85□□□□□ -2.27
LMO4P61968 RNU7-21P-201ENST00000459430 62 ntBASIC0.85□□□□□ -2.27
LMO4P61968 snoU13.18-201ENST00000459483 104 ntBASIC0.85□□□□□ -2.27
LMO4P61968 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC0.85□□□□□ -2.27
LMO4P61968 SNORA25.16-201ENST00000516741 121 ntBASIC0.85□□□□□ -2.27
LMO4P61968 MTND5P40-201ENST00000559945 246 ntBASIC0.85□□□□□ -2.27
LMO4P61968 MIR4500-201ENST00000579472 76 ntBASIC0.85□□□□□ -2.27
LMO4P61968 MIR4491-201ENST00000581087 68 ntBASIC0.85□□□□□ -2.27
LMO4P61968 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.85□□□□□ -2.27
LMO4P61968 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC0.85□□□□□ -2.27
LMO4P61968 Y_RNA.190-201ENST00000363964 101 ntBASIC0.84□□□□□ -2.27
LMO4P61968 RNU1-36P-201ENST00000365130 165 ntBASIC0.84□□□□□ -2.27
LMO4P61968 SNORA80D-201ENST00000384488 135 ntBASIC0.84□□□□□ -2.27
LMO4P61968 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.84□□□□□ -2.27
LMO4P61968 RNU7-185P-201ENST00000459215 60 ntBASIC0.84□□□□□ -2.27
LMO4P61968 RPS29P1-201ENST00000465274 159 ntBASIC0.84□□□□□ -2.27
LMO4P61968 SNORD79.1-201ENST00000516069 84 ntBASIC0.84□□□□□ -2.27
LMO4P61968 RNA5SP220-201ENST00000516298 104 ntBASIC0.84□□□□□ -2.27
LMO4P61968 AC026421.1-201ENST00000519101 163 ntBASIC0.84□□□□□ -2.27
LMO4P61968 AL078603.1-201ENST00000603824 313 ntBASIC0.84□□□□□ -2.27
LMO4P61968 AC106800.4-201ENST00000614905 153 ntBASIC0.84□□□□□ -2.27
LMO4P61968 AC023934.1-201ENST00000574529 2389 ntBASIC0.84□□□□□ -2.28
LMO4P61968 RNU6-369P-201ENST00000362515 102 ntBASIC0.83□□□□□ -2.28
LMO4P61968 SNORD116-10-201ENST00000363791 102 ntBASIC0.83□□□□□ -2.28
LMO4P61968 RNU4-38P-201ENST00000364472 129 ntBASIC0.83□□□□□ -2.28
LMO4P61968 RNU6-1134P-201ENST00000365156 101 ntBASIC0.83□□□□□ -2.28
LMO4P61968 SNORD58A-201ENST00000383875 65 ntBASIC0.83□□□□□ -2.28
LMO4P61968 RNU6-42P-201ENST00000384165 107 ntBASIC0.83□□□□□ -2.28
LMO4P61968 SNORA72.6-201ENST00000384520 129 ntBASIC0.83□□□□□ -2.28
LMO4P61968 MIR489-201ENST00000384923 84 ntBASIC0.83□□□□□ -2.28
LMO4P61968 MIR1257-201ENST00000408490 117 ntBASIC0.83□□□□□ -2.28
LMO4P61968 BX276092.1-201ENST00000427368 251 ntBASIC0.83□□□□□ -2.28
LMO4P61968 RNU6-531P-201ENST00000516694 104 ntBASIC0.83□□□□□ -2.28
LMO4P61968 MIR4771-2-201ENST00000577758 74 ntBASIC0.83□□□□□ -2.28
LMO4P61968 MIR4771-1-201ENST00000582617 74 ntBASIC0.83□□□□□ -2.28
LMO4P61968 RMST_2.1-201ENST00000617263 136 ntBASIC0.83□□□□□ -2.28
LMO4P61968 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.83□□□□□ -2.28
LMO4P61968 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC0.82□□□□□ -2.28
LMO4P61968 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.82□□□□□ -2.28
LMO4P61968 MIR373-201ENST00000362273 69 ntBASIC0.82□□□□□ -2.28
LMO4P61968 RNU6-403P-201ENST00000363163 104 ntBASIC0.82□□□□□ -2.28
LMO4P61968 RNU6-934P-201ENST00000365154 107 ntBASIC0.82□□□□□ -2.28
LMO4P61968 MIR19B1-201ENST00000384829 87 ntBASIC0.82□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 225.2 ms