Protein–RNA interactions for Protein: P48436

SOX9, Transcription factor SOX-9, humanhuman

Predictions only

Length 509 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX9P48436 Y_RNA.588-201ENST00000391254 102 ntBASIC1.46□□□□□ -2.18
SOX9P48436 MIR942-201ENST00000401111 86 ntBASIC1.46□□□□□ -2.18
SOX9P48436 SNORA25.16-201ENST00000516741 121 ntBASIC1.46□□□□□ -2.18
SOX9P48436 RNU6-90P-201ENST00000606352 106 ntBASIC1.46□□□□□ -2.18
SOX9P48436 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
SOX9P48436 AC096949.1-201ENST00000412047 152 ntBASIC1.45□□□□□ -2.18
SOX9P48436 RNU6-531P-201ENST00000516694 104 ntBASIC1.45□□□□□ -2.18
SOX9P48436 RNU6-537P-201ENST00000517277 103 ntBASIC1.45□□□□□ -2.18
SOX9P48436 MIR6082-201ENST00000613604 109 ntBASIC1.45□□□□□ -2.18
SOX9P48436 RMST_2.1-201ENST00000617263 136 ntBASIC1.45□□□□□ -2.18
SOX9P48436 MIR101-2-201ENST00000362195 79 ntBASIC1.44□□□□□ -2.18
SOX9P48436 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC1.44□□□□□ -2.18
SOX9P48436 MIR520F-201ENST00000384824 87 ntBASIC1.44□□□□□ -2.18
SOX9P48436 RNU1-119P-201ENST00000391122 165 ntBASIC1.44□□□□□ -2.18
SOX9P48436 MIR548G-201ENST00000408442 89 ntBASIC1.44□□□□□ -2.18
SOX9P48436 MIR1827-201ENST00000408549 66 ntBASIC1.44□□□□□ -2.18
SOX9P48436 AC023790.1-201ENST00000482174 347 ntBASIC1.44□□□□□ -2.18
SOX9P48436 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.44□□□□□ -2.18
SOX9P48436 Y_RNA.13-201ENST00000362403 112 ntBASIC1.43□□□□□ -2.18
SOX9P48436 Y_RNA.96-201ENST00000363092 109 ntBASIC1.43□□□□□ -2.18
SOX9P48436 Y_RNA.107-201ENST00000363190 121 ntBASIC1.43□□□□□ -2.18
SOX9P48436 SNORD89-201ENST00000390981 114 ntBASIC1.43□□□□□ -2.18
SOX9P48436 RNU6-168P-201ENST00000516189 101 ntBASIC1.43□□□□□ -2.18
SOX9P48436 RNU6-1006P-201ENST00000516998 103 ntBASIC1.43□□□□□ -2.18
SOX9P48436 RNA5SP404-201ENST00000517118 132 ntBASIC1.43□□□□□ -2.18
SOX9P48436 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.43□□□□□ -2.18
SOX9P48436 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.43□□□□□ -2.18
SOX9P48436 MIR618-201ENST00000385287 98 ntBASIC1.42□□□□□ -2.18
SOX9P48436 RNU6-1194P-201ENST00000516208 104 ntBASIC1.42□□□□□ -2.18
SOX9P48436 RNU6-109P-201ENST00000516364 107 ntBASIC1.42□□□□□ -2.18
SOX9P48436 SNORA40.13-201ENST00000516379 120 ntBASIC1.42□□□□□ -2.18
SOX9P48436 Y_RNA.677-201ENST00000516401 85 ntBASIC1.42□□□□□ -2.18
SOX9P48436 RNU6-184P-201ENST00000516514 107 ntBASIC1.42□□□□□ -2.18
SOX9P48436 RNU6-765P-201ENST00000516916 99 ntBASIC1.42□□□□□ -2.18
SOX9P48436 MIR4804-201ENST00000581683 73 ntBASIC1.42□□□□□ -2.18
SOX9P48436 MIR4439-201ENST00000583746 80 ntBASIC1.42□□□□□ -2.18
SOX9P48436 MIR2052-201ENST00000636055 55 ntBASIC1.42□□□□□ -2.18
SOX9P48436 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC1.41□□□□□ -2.18
SOX9P48436 HSBP1P2-201ENST00000299671 229 ntBASIC1.41□□□□□ -2.18
SOX9P48436 MIR96-201ENST00000362288 78 ntBASIC1.41□□□□□ -2.18
SOX9P48436 Y_RNA.93-201ENST00000363066 109 ntBASIC1.41□□□□□ -2.18
SOX9P48436 Y_RNA.247-201ENST00000364500 92 ntBASIC1.41□□□□□ -2.18
SOX9P48436 SNORD114-24-201ENST00000365029 72 ntBASIC1.41□□□□□ -2.18
SOX9P48436 SNORD114-22-201ENST00000365423 72 ntBASIC1.41□□□□□ -2.18
SOX9P48436 U7.7-201ENST00000459276 60 ntBASIC1.41□□□□□ -2.18
SOX9P48436 RNU6-1110P-201ENST00000516462 101 ntBASIC1.41□□□□□ -2.18
SOX9P48436 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC1.41□□□□□ -2.18
SOX9P48436 SNORD92-201ENST00000585078 85 ntBASIC1.41□□□□□ -2.18
SOX9P48436 MIR6078-201ENST00000611069 100 ntBASIC1.41□□□□□ -2.18
SOX9P48436 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.41□□□□□ -2.18
SOX9P48436 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.41□□□□□ -2.18
SOX9P48436 RNU6-170P-201ENST00000362832 104 ntBASIC1.4□□□□□ -2.19
SOX9P48436 Y_RNA.95-201ENST00000363079 95 ntBASIC1.4□□□□□ -2.19
SOX9P48436 RNU1-124P-201ENST00000363861 145 ntBASIC1.4□□□□□ -2.19
SOX9P48436 MIR320A-201ENST00000385302 82 ntBASIC1.4□□□□□ -2.19
SOX9P48436 SNORD124-201ENST00000459577 104 ntBASIC1.4□□□□□ -2.19
SOX9P48436 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC1.4□□□□□ -2.19
SOX9P48436 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.4□□□□□ -2.19
SOX9P48436 MIR8066-201ENST00000617280 78 ntBASIC1.4□□□□□ -2.19
SOX9P48436 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.4□□□□□ -2.19
SOX9P48436 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.4□□□□□ -2.19
SOX9P48436 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC1.39□□□□□ -2.19
SOX9P48436 RNA5SP89-201ENST00000410300 108 ntBASIC1.39□□□□□ -2.19
SOX9P48436 RNU7-102P-201ENST00000458948 62 ntBASIC1.39□□□□□ -2.19
SOX9P48436 AC004223.1-201ENST00000479840 271 ntBASIC1.39□□□□□ -2.19
SOX9P48436 RNU6-795P-201ENST00000516323 103 ntBASIC1.39□□□□□ -2.19
SOX9P48436 Y_RNA.697-201ENST00000516776 113 ntBASIC1.39□□□□□ -2.19
SOX9P48436 AC013244.2-201ENST00000603396 103 ntBASIC1.39□□□□□ -2.19
SOX9P48436 RNU7-10P-201ENST00000607194 63 ntBASIC1.39□□□□□ -2.19
SOX9P48436 SNORD114-26-201ENST00000363543 72 ntBASIC1.38□□□□□ -2.19
SOX9P48436 RNU6-571P-201ENST00000384128 107 ntBASIC1.38□□□□□ -2.19
SOX9P48436 Y_RNA.567-201ENST00000384736 106 ntBASIC1.38□□□□□ -2.19
SOX9P48436 BX276092.1-201ENST00000427368 251 ntBASIC1.38□□□□□ -2.19
SOX9P48436 AC109327.2-201ENST00000448339 378 ntBASIC1.38□□□□□ -2.19
SOX9P48436 MIR7974-201ENST00000615835 79 ntBASIC1.38□□□□□ -2.19
SOX9P48436 AP001318.4-201ENST00000616637 121 ntBASIC1.38□□□□□ -2.19
SOX9P48436 RNU6-369P-201ENST00000362515 102 ntBASIC1.37□□□□□ -2.19
SOX9P48436 Y_RNA.42-201ENST00000362660 108 ntBASIC1.37□□□□□ -2.19
SOX9P48436 SNORD114-27-201ENST00000363766 70 ntBASIC1.37□□□□□ -2.19
SOX9P48436 RNU6-939P-201ENST00000384634 107 ntBASIC1.37□□□□□ -2.19
SOX9P48436 RNU7-56P-201ENST00000458744 62 ntBASIC1.37□□□□□ -2.19
SOX9P48436 MIR520H-201ENST00000385126 88 ntBASIC1.36□□□□□ -2.19
SOX9P48436 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.36□□□□□ -2.19
SOX9P48436 RNU6-158P-201ENST00000517104 100 ntBASIC1.36□□□□□ -2.19
SOX9P48436 MIR548H5-201ENST00000580314 60 ntBASIC1.36□□□□□ -2.19
SOX9P48436 AC025627.3-201ENST00000582078 182 ntBASIC1.36□□□□□ -2.19
SOX9P48436 AC012531.4-201ENST00000616509 177 ntBASIC1.36□□□□□ -2.19
SOX9P48436 RNU6-1125P-201ENST00000363601 107 ntBASIC1.35□□□□□ -2.19
SOX9P48436 RNU6-480P-201ENST00000384332 107 ntBASIC1.35□□□□□ -2.19
SOX9P48436 SNORD105-201ENST00000386910 85 ntBASIC1.35□□□□□ -2.19
SOX9P48436 SNRPGP12-201ENST00000449481 213 ntBASIC1.35□□□□□ -2.19
SOX9P48436 Y_RNA.705-201ENST00000516862 110 ntBASIC1.35□□□□□ -2.19
SOX9P48436 AP003327.1-201ENST00000529684 127 ntBASIC1.35□□□□□ -2.19
SOX9P48436 MIR6515-201ENST00000619843 57 ntBASIC1.35□□□□□ -2.19
SOX9P48436 AC091304.10-201ENST00000641554 121 ntBASIC1.35□□□□□ -2.19
SOX9P48436 RNU6-813P-201ENST00000384691 107 ntBASIC1.34□□□□□ -2.19
SOX9P48436 SNORA40.6-201ENST00000391153 128 ntBASIC1.34□□□□□ -2.19
SOX9P48436 RNU6-955P-201ENST00000410497 104 ntBASIC1.34□□□□□ -2.19
SOX9P48436 RNA5SP61-201ENST00000516453 100 ntBASIC1.34□□□□□ -2.19
SOX9P48436 RNU6-850P-201ENST00000516934 103 ntBASIC1.34□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 8.9 ms