Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 MTND4LP1-201ENST00000446263 157 ntBASIC2.19□□□□□ -2.06
COL8A1P27658 AC097635.1-201ENST00000450678 155 ntBASIC2.19□□□□□ -2.06
COL8A1P27658 MIR18B-201ENST00000454574 71 ntBASIC2.19□□□□□ -2.06
COL8A1P27658 RN7SL274P-201ENST00000492268 272 ntBASIC2.19□□□□□ -2.06
COL8A1P27658 AC013244.2-201ENST00000603396 103 ntBASIC2.19□□□□□ -2.06
COL8A1P27658 U1.36-201ENST00000620684 176 ntBASIC2.19□□□□□ -2.06
COL8A1P27658 MIR7978-201ENST00000636158 59 ntBASIC2.19□□□□□ -2.06
COL8A1P27658 AC131280.1-202ENST00000624067 4211 ntBASIC2.19□□□□□ -2.06
COL8A1P27658 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
COL8A1P27658 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
COL8A1P27658 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
COL8A1P27658 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
COL8A1P27658 SNORA25.5-201ENST00000363782 126 ntBASIC2.18□□□□□ -2.06
COL8A1P27658 RNU6-382P-201ENST00000365181 106 ntBASIC2.18□□□□□ -2.06
COL8A1P27658 SNORD41-201ENST00000386967 70 ntBASIC2.18□□□□□ -2.06
COL8A1P27658 RNA5SP100-201ENST00000410903 110 ntBASIC2.18□□□□□ -2.06
COL8A1P27658 RNA5SP59-201ENST00000410922 110 ntBASIC2.18□□□□□ -2.06
COL8A1P27658 ATP6V0E1P3-201ENST00000420036 246 ntBASIC2.18□□□□□ -2.06
COL8A1P27658 AC092427.1-202ENST00000430569 476 ntBASIC2.18□□□□□ -2.06
COL8A1P27658 RNU6-982P-201ENST00000516216 102 ntBASIC2.18□□□□□ -2.06
COL8A1P27658 5S_rRNA.3-201ENST00000517021 110 ntBASIC2.18□□□□□ -2.06
COL8A1P27658 MIR4446-201ENST00000578505 67 ntBASIC2.18□□□□□ -2.06
COL8A1P27658 MIR466-201ENST00000580653 84 ntBASIC2.18□□□□□ -2.06
COL8A1P27658 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.18□□□□□ -2.06
COL8A1P27658 5S_rRNA.19-201ENST00000612131 110 ntBASIC2.18□□□□□ -2.06
COL8A1P27658 5S_rRNA.18-201ENST00000621941 110 ntBASIC2.18□□□□□ -2.06
COL8A1P27658 MIR6873-201ENST00000622788 63 ntBASIC2.18□□□□□ -2.06
COL8A1P27658 FO624990.1-201ENST00000636373 85 ntBASIC2.18□□□□□ -2.06
COL8A1P27658 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.18□□□□□ -2.06
COL8A1P27658 MIR26A1-201ENST00000362205 77 ntBASIC2.17□□□□□ -2.06
COL8A1P27658 RNA5SP393-201ENST00000363423 117 ntBASIC2.17□□□□□ -2.06
COL8A1P27658 RNU6-668P-201ENST00000364180 107 ntBASIC2.17□□□□□ -2.06
COL8A1P27658 Y_RNA.375-201ENST00000365625 101 ntBASIC2.17□□□□□ -2.06
COL8A1P27658 U3.27-201ENST00000391237 200 ntBASIC2.17□□□□□ -2.06
COL8A1P27658 RNU6-1054P-201ENST00000411293 104 ntBASIC2.17□□□□□ -2.06
COL8A1P27658 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.17□□□□□ -2.06
COL8A1P27658 MIR3605-201ENST00000583214 100 ntBASIC2.17□□□□□ -2.06
COL8A1P27658 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
COL8A1P27658 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.16□□□□□ -2.06
COL8A1P27658 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.16□□□□□ -2.06
COL8A1P27658 RNU6-1335P-201ENST00000365426 107 ntBASIC2.16□□□□□ -2.06
COL8A1P27658 SUMO1P4-201ENST00000429430 302 ntBASIC2.16□□□□□ -2.06
COL8A1P27658 RPL23AP42-201ENST00000471152 471 ntBASIC2.16□□□□□ -2.06
COL8A1P27658 Y_RNA.697-201ENST00000516776 113 ntBASIC2.16□□□□□ -2.06
COL8A1P27658 MIR3920-201ENST00000581751 86 ntBASIC2.16□□□□□ -2.06
COL8A1P27658 SNRPGP19-201ENST00000603826 189 ntBASIC2.16□□□□□ -2.06
COL8A1P27658 AC010297.1-201ENST00000623948 149 ntBASIC2.16□□□□□ -2.06
COL8A1P27658 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
COL8A1P27658 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC2.15□□□□□ -2.06
COL8A1P27658 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.15□□□□□ -2.06
COL8A1P27658 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.15□□□□□ -2.07
COL8A1P27658 Y_RNA.258-201ENST00000364613 105 ntBASIC2.15□□□□□ -2.07
COL8A1P27658 RNA5SP117-201ENST00000365294 118 ntBASIC2.15□□□□□ -2.07
COL8A1P27658 RNU6-1265P-201ENST00000516342 103 ntBASIC2.15□□□□□ -2.07
COL8A1P27658 SNORA31.17-201ENST00000516953 127 ntBASIC2.15□□□□□ -2.07
COL8A1P27658 RNU6-1057P-201ENST00000517162 102 ntBASIC2.15□□□□□ -2.07
COL8A1P27658 MIR4498-201ENST00000577599 66 ntBASIC2.15□□□□□ -2.07
COL8A1P27658 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
COL8A1P27658 RNU6-446P-201ENST00000362827 106 ntBASIC2.14□□□□□ -2.07
COL8A1P27658 RNU1-17P-201ENST00000363022 152 ntBASIC2.14□□□□□ -2.07
COL8A1P27658 RNA5SP192-201ENST00000364404 120 ntBASIC2.14□□□□□ -2.07
COL8A1P27658 RNU6-580P-201ENST00000365159 107 ntBASIC2.14□□□□□ -2.07
COL8A1P27658 AL359511.1-201ENST00000402970 211 ntBASIC2.14□□□□□ -2.07
COL8A1P27658 MIR5194-201ENST00000582634 120 ntBASIC2.14□□□□□ -2.07
COL8A1P27658 MIR3670-2-201ENST00000582974 65 ntBASIC2.14□□□□□ -2.07
COL8A1P27658 MIR3670-1-201ENST00000584160 65 ntBASIC2.14□□□□□ -2.07
COL8A1P27658 MIR3670-3-201ENST00000584855 65 ntBASIC2.14□□□□□ -2.07
COL8A1P27658 MIR3670-4-201ENST00000612260 65 ntBASIC2.14□□□□□ -2.07
COL8A1P27658 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.14□□□□□ -2.07
COL8A1P27658 MIR6516-201ENST00000630554 81 ntBASIC2.14□□□□□ -2.07
COL8A1P27658 RNU6-936P-201ENST00000384005 107 ntBASIC2.13□□□□□ -2.07
COL8A1P27658 SNORA67.3-201ENST00000384366 140 ntBASIC2.13□□□□□ -2.07
COL8A1P27658 MIR599-201ENST00000385069 95 ntBASIC2.13□□□□□ -2.07
COL8A1P27658 AL049779.4-201ENST00000604500 156 ntBASIC2.13□□□□□ -2.07
COL8A1P27658 MIR6082-201ENST00000613604 109 ntBASIC2.13□□□□□ -2.07
COL8A1P27658 RNA5SP259-201ENST00000365541 109 ntBASIC2.12□□□□□ -2.07
COL8A1P27658 RNU6-1184P-201ENST00000384588 108 ntBASIC2.12□□□□□ -2.07
COL8A1P27658 SNORA64-201ENST00000384674 134 ntBASIC2.12□□□□□ -2.07
COL8A1P27658 MIR489-201ENST00000384923 84 ntBASIC2.12□□□□□ -2.07
COL8A1P27658 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC2.12□□□□□ -2.07
COL8A1P27658 SCARNA21.1-201ENST00000515996 128 ntBASIC2.12□□□□□ -2.07
COL8A1P27658 RNU6-922P-201ENST00000516753 99 ntBASIC2.12□□□□□ -2.07
COL8A1P27658 RNU6-765P-201ENST00000516916 99 ntBASIC2.12□□□□□ -2.07
COL8A1P27658 AC138907.6-201ENST00000568401 126 ntBASIC2.12□□□□□ -2.07
COL8A1P27658 AC138869.1-201ENST00000568623 124 ntBASIC2.12□□□□□ -2.07
COL8A1P27658 AL078603.1-201ENST00000603824 313 ntBASIC2.12□□□□□ -2.07
COL8A1P27658 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
COL8A1P27658 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.11□□□□□ -2.07
COL8A1P27658 RNU6-369P-201ENST00000362515 102 ntBASIC2.11□□□□□ -2.07
COL8A1P27658 MIR513A1-201ENST00000385138 129 ntBASIC2.11□□□□□ -2.07
COL8A1P27658 AP003716.2-201ENST00000528260 108 ntBASIC2.11□□□□□ -2.07
COL8A1P27658 AC103810.8-201ENST00000607347 118 ntBASIC2.11□□□□□ -2.07
COL8A1P27658 5S_rRNA.15-201ENST00000611169 127 ntBASIC2.11□□□□□ -2.07
COL8A1P27658 GS1-279B7.1-204ENST00000641809 378 ntBASIC2.11□□□□□ -2.07
COL8A1P27658 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
COL8A1P27658 Y_RNA.13-201ENST00000362403 112 ntBASIC2.1□□□□□ -2.07
COL8A1P27658 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
COL8A1P27658 SNORD75.2-201ENST00000408784 58 ntBASIC2.1□□□□□ -2.07
COL8A1P27658 AL161935.2-201ENST00000414627 60 ntBASIC2.1□□□□□ -2.07
COL8A1P27658 RNU6-295P-201ENST00000516901 104 ntBASIC2.1□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 197.8 ms