Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 MIR760-201ENST00000390220 80 ntBASIC0.06□□□□□ -2.4
MSH4O15457 MIR548L-201ENST00000408303 86 ntBASIC0.06□□□□□ -2.4
MSH4O15457 AC244505.6-201ENST00000452829 130 ntBASIC0.06□□□□□ -2.4
MSH4O15457 MIR5190-201ENST00000581537 80 ntBASIC0.06□□□□□ -2.4
MSH4O15457 AL137067.1-201ENST00000615933 120 ntBASIC0.06□□□□□ -2.4
MSH4O15457 AC067863.3-201ENST00000624172 122 ntBASIC0.06□□□□□ -2.4
MSH4O15457 SNORA9.1-201ENST00000362412 131 ntBASIC0.05□□□□□ -2.4
MSH4O15457 RNA5SP214-201ENST00000363378 118 ntBASIC0.05□□□□□ -2.4
MSH4O15457 SNORA42.1-201ENST00000363515 137 ntBASIC0.05□□□□□ -2.4
MSH4O15457 RNU6-151P-201ENST00000364158 107 ntBASIC0.05□□□□□ -2.4
MSH4O15457 Y_RNA.221-201ENST00000364248 96 ntBASIC0.05□□□□□ -2.4
MSH4O15457 RNU6-1130P-201ENST00000365434 107 ntBASIC0.05□□□□□ -2.4
MSH4O15457 Y_RNA.401-201ENST00000383965 117 ntBASIC0.05□□□□□ -2.4
MSH4O15457 Y_RNA.441-201ENST00000384123 112 ntBASIC0.05□□□□□ -2.4
MSH4O15457 RNU6-616P-201ENST00000384353 107 ntBASIC0.05□□□□□ -2.4
MSH4O15457 RNU6-429P-201ENST00000384582 108 ntBASIC0.05□□□□□ -2.4
MSH4O15457 Y_RNA.552-201ENST00000384665 112 ntBASIC0.05□□□□□ -2.4
MSH4O15457 AL078595.1-201ENST00000404458 226 ntBASIC0.05□□□□□ -2.4
MSH4O15457 RNU7-48P-201ENST00000458875 63 ntBASIC0.05□□□□□ -2.4
MSH4O15457 RNU7-104P-201ENST00000459398 79 ntBASIC0.05□□□□□ -2.4
MSH4O15457 TRAJ51-201ENST00000504127 63 ntBASIC0.05□□□□□ -2.4
MSH4O15457 RNU7-161P-201ENST00000517289 62 ntBASIC0.05□□□□□ -2.4
MSH4O15457 AC104408.1-201ENST00000605241 170 ntBASIC0.05□□□□□ -2.4
MSH4O15457 RNU1-29P-201ENST00000606574 126 ntBASIC0.05□□□□□ -2.4
MSH4O15457 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.04□□□□□ -2.4
MSH4O15457 RNU6-726P-201ENST00000364680 107 ntBASIC0.04□□□□□ -2.4
MSH4O15457 Y_RNA.280-201ENST00000364765 112 ntBASIC0.04□□□□□ -2.4
MSH4O15457 Y_RNA.299-201ENST00000364973 94 ntBASIC0.04□□□□□ -2.4
MSH4O15457 RNU6-1135P-201ENST00000411083 103 ntBASIC0.04□□□□□ -2.4
MSH4O15457 RNU7-120P-201ENST00000459334 63 ntBASIC0.04□□□□□ -2.4
MSH4O15457 IGHVII-40-1-201ENST00000517316 58 ntBASIC0.04□□□□□ -2.4
MSH4O15457 AC138869.1-201ENST00000568623 124 ntBASIC0.04□□□□□ -2.4
MSH4O15457 Y_RNA.8-201ENST00000362353 102 ntBASIC0.03□□□□□ -2.4
MSH4O15457 SNORD114-5-201ENST00000362928 70 ntBASIC0.03□□□□□ -2.4
MSH4O15457 SNORD114-9-201ENST00000364370 72 ntBASIC0.03□□□□□ -2.4
MSH4O15457 Y_RNA.294-201ENST00000364916 102 ntBASIC0.03□□□□□ -2.4
MSH4O15457 MIR635-201ENST00000384830 98 ntBASIC0.03□□□□□ -2.4
MSH4O15457 MT-TI-201ENST00000387365 69 ntBASIC0.03□□□□□ -2.4
MSH4O15457 MT-TG-201ENST00000387429 68 ntBASIC0.03□□□□□ -2.4
MSH4O15457 RNU6-127P-201ENST00000390897 107 ntBASIC0.03□□□□□ -2.4
MSH4O15457 SNORD77B-201ENST00000391112 67 ntBASIC0.03□□□□□ -2.4
MSH4O15457 RPL39P34-201ENST00000477141 156 ntBASIC0.03□□□□□ -2.4
MSH4O15457 RNU7-2P-201ENST00000516096 62 ntBASIC0.03□□□□□ -2.4
MSH4O15457 RNU7-6P-201ENST00000516845 62 ntBASIC0.03□□□□□ -2.4
MSH4O15457 SNORA81.3-201ENST00000517283 198 ntBASIC0.03□□□□□ -2.4
MSH4O15457 IGKV1-22-201ENST00000524313 326 ntBASIC0.03□□□□□ -2.4
MSH4O15457 MIR548H5-201ENST00000580314 60 ntBASIC0.03□□□□□ -2.4
MSH4O15457 AC004792.1-201ENST00000614523 137 ntBASIC0.03□□□□□ -2.4
MSH4O15457 Y_RNA.29-201ENST00000362570 113 ntBASIC0.02□□□□□ -2.41
MSH4O15457 Y_RNA.98-201ENST00000363109 102 ntBASIC0.02□□□□□ -2.41
MSH4O15457 RNA5SP403-201ENST00000363598 108 ntBASIC0.02□□□□□ -2.41
MSH4O15457 RNU6-915P-201ENST00000364943 103 ntBASIC0.02□□□□□ -2.41
MSH4O15457 Y_RNA.328-201ENST00000365208 113 ntBASIC0.02□□□□□ -2.41
MSH4O15457 Y_RNA.362-201ENST00000365518 110 ntBASIC0.02□□□□□ -2.41
MSH4O15457 SNORA2A-201ENST00000383885 135 ntBASIC0.02□□□□□ -2.41
MSH4O15457 RNU7-197P-201ENST00000458836 62 ntBASIC0.02□□□□□ -2.41
MSH4O15457 MIR4667-201ENST00000578933 66 ntBASIC0.02□□□□□ -2.41
MSH4O15457 SNORA70.25-201ENST00000612741 95 ntBASIC0.02□□□□□ -2.41
MSH4O15457 MIR376B-201ENST00000614515 100 ntBASIC0.02□□□□□ -2.41
MSH4O15457 AL162376.1-201ENST00000624117 175 ntBASIC0.02□□□□□ -2.41
MSH4O15457 AC021753.1-201ENST00000635724 168 ntBASIC0.02□□□□□ -2.41
MSH4O15457 RNU6-865P-201ENST00000364772 107 ntBASIC0.01□□□□□ -2.41
MSH4O15457 SNORD115-35-201ENST00000365122 82 ntBASIC0.01□□□□□ -2.41
MSH4O15457 RNA5SP128-201ENST00000365305 116 ntBASIC0.01□□□□□ -2.41
MSH4O15457 RNU6-449P-201ENST00000383914 107 ntBASIC0.01□□□□□ -2.41
MSH4O15457 SNORD116-18-201ENST00000383961 92 ntBASIC0.01□□□□□ -2.41
MSH4O15457 MIR593-201ENST00000384856 100 ntBASIC0.01□□□□□ -2.41
MSH4O15457 MIR599-201ENST00000385069 95 ntBASIC0.01□□□□□ -2.41
MSH4O15457 MIR3121-201ENST00000579680 77 ntBASIC0.01□□□□□ -2.41
MSH4O15457 Y_RNA.773-201ENST00000607168 90 ntBASIC0.01□□□□□ -2.41
MSH4O15457 Y_RNA.778-201ENST00000620203 90 ntBASIC0.01□□□□□ -2.41
MSH4O15457 AP001362.1-201ENST00000625165 124 ntBASIC0.01□□□□□ -2.41
MSH4O15457 Y_RNA.127-201ENST00000363386 109 ntBASIC0□□□□□ -2.41
MSH4O15457 RNU6-804P-201ENST00000384286 107 ntBASIC0□□□□□ -2.41
MSH4O15457 SNORD41.1-201ENST00000391000 69 ntBASIC0□□□□□ -2.41
MSH4O15457 MIR548H2-201ENST00000408874 88 ntBASIC0□□□□□ -2.41
MSH4O15457 RNU7-195P-201ENST00000458793 62 ntBASIC0□□□□□ -2.41
MSH4O15457 RNA5SP272-201ENST00000516095 111 ntBASIC0□□□□□ -2.41
MSH4O15457 RNU7-10P-201ENST00000607194 63 ntBASIC0□□□□□ -2.41
MSH4O15457 AC087741.2-201ENST00000619415 172 ntBASIC0□□□□□ -2.41
MSH4O15457 SNORD114-16-201ENST00000363044 70 ntBASIC-0.01□□□□□ -2.41
MSH4O15457 Y_RNA.257-201ENST00000364596 102 ntBASIC-0.01□□□□□ -2.41
MSH4O15457 MIR34C-201ENST00000384831 77 ntBASIC-0.01□□□□□ -2.41
MSH4O15457 RNU6-269P-201ENST00000391077 97 ntBASIC-0.01□□□□□ -2.41
MSH4O15457 MIR1263-201ENST00000408324 86 ntBASIC-0.01□□□□□ -2.41
MSH4O15457 Y_RNA.692-201ENST00000516627 105 ntBASIC-0.01□□□□□ -2.41
MSH4O15457 Y_RNA.700-201ENST00000516806 100 ntBASIC-0.01□□□□□ -2.41
MSH4O15457 Y_RNA.114-201ENST00000363265 113 ntBASIC-0.02□□□□□ -2.41
MSH4O15457 Y_RNA.785-201ENST00000384290 109 ntBASIC-0.02□□□□□ -2.41
MSH4O15457 MIR519A1-201ENST00000385257 85 ntBASIC-0.02□□□□□ -2.41
MSH4O15457 Y_RNA.580-201ENST00000391004 95 ntBASIC-0.02□□□□□ -2.41
MSH4O15457 MIR513C-201ENST00000401352 84 ntBASIC-0.02□□□□□ -2.41
MSH4O15457 MIR548I2-201ENST00000408348 149 ntBASIC-0.02□□□□□ -2.41
MSH4O15457 RNU6-735P-201ENST00000410612 107 ntBASIC-0.02□□□□□ -2.41
MSH4O15457 SNORD63B-201ENST00000411005 70 ntBASIC-0.02□□□□□ -2.41
MSH4O15457 AC097635.1-201ENST00000450678 155 ntBASIC-0.02□□□□□ -2.41
MSH4O15457 RNU7-106P-201ENST00000459514 67 ntBASIC-0.02□□□□□ -2.41
MSH4O15457 RNU6-521P-201ENST00000516663 105 ntBASIC-0.02□□□□□ -2.41
MSH4O15457 MIR4290-201ENST00000583807 95 ntBASIC-0.02□□□□□ -2.41
MSH4O15457 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC-0.02□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 233.7 ms