Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 RNU6-1057P-201ENST00000517162 102 ntBASIC3.43□□□□□ -1.86
CCDC61Q9Y6R9 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
CCDC61Q9Y6R9 RNA5SP456-201ENST00000364002 114 ntBASIC3.42□□□□□ -1.86
CCDC61Q9Y6R9 RNA5SP425-201ENST00000410336 112 ntBASIC3.42□□□□□ -1.86
CCDC61Q9Y6R9 AC097635.1-201ENST00000450678 155 ntBASIC3.42□□□□□ -1.86
CCDC61Q9Y6R9 AC013244.2-201ENST00000603396 103 ntBASIC3.42□□□□□ -1.86
CCDC61Q9Y6R9 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
CCDC61Q9Y6R9 RNU1-36P-201ENST00000365130 165 ntBASIC3.41□□□□□ -1.86
CCDC61Q9Y6R9 RNU1-51P-201ENST00000365345 176 ntBASIC3.41□□□□□ -1.86
CCDC61Q9Y6R9 RN7SKP223-201ENST00000410582 62 ntBASIC3.41□□□□□ -1.86
CCDC61Q9Y6R9 RNU6-1054P-201ENST00000411293 104 ntBASIC3.41□□□□□ -1.86
CCDC61Q9Y6R9 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC3.41□□□□□ -1.86
CCDC61Q9Y6R9 RNU6-982P-201ENST00000516216 102 ntBASIC3.41□□□□□ -1.86
CCDC61Q9Y6R9 MIR3192-201ENST00000584920 77 ntBASIC3.41□□□□□ -1.86
CCDC61Q9Y6R9 U1.36-201ENST00000620684 176 ntBASIC3.41□□□□□ -1.86
CCDC61Q9Y6R9 WARS-244ENST00000627608 123 ntTSL 5 BASIC3.41□□□□□ -1.86
CCDC61Q9Y6R9 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
CCDC61Q9Y6R9 RNU6-382P-201ENST00000365181 106 ntBASIC3.4□□□□□ -1.87
CCDC61Q9Y6R9 RNU6-936P-201ENST00000384005 107 ntBASIC3.4□□□□□ -1.87
CCDC61Q9Y6R9 RNU6-1184P-201ENST00000384588 108 ntBASIC3.4□□□□□ -1.87
CCDC61Q9Y6R9 RNA5SP344-201ENST00000411081 104 ntBASIC3.4□□□□□ -1.87
CCDC61Q9Y6R9 MIR18B-201ENST00000454574 71 ntBASIC3.4□□□□□ -1.87
CCDC61Q9Y6R9 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC3.39□□□□□ -1.87
CCDC61Q9Y6R9 RNA5SP192-201ENST00000364404 120 ntBASIC3.39□□□□□ -1.87
CCDC61Q9Y6R9 U3.27-201ENST00000391237 200 ntBASIC3.39□□□□□ -1.87
CCDC61Q9Y6R9 AL356320.1-201ENST00000429616 163 ntBASIC3.39□□□□□ -1.87
CCDC61Q9Y6R9 RN7SL274P-201ENST00000492268 272 ntBASIC3.39□□□□□ -1.87
CCDC61Q9Y6R9 MIR4648-201ENST00000580107 72 ntBASIC3.39□□□□□ -1.87
CCDC61Q9Y6R9 uc_338.6-201ENST00000613544 171 ntBASIC3.39□□□□□ -1.87
CCDC61Q9Y6R9 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC3.39□□□□□ -1.87
CCDC61Q9Y6R9 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC3.39□□□□□ -1.87
CCDC61Q9Y6R9 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
CCDC61Q9Y6R9 Y_RNA.375-201ENST00000365625 101 ntBASIC3.38□□□□□ -1.87
CCDC61Q9Y6R9 AC004965.1-201ENST00000413033 213 ntBASIC3.38□□□□□ -1.87
CCDC61Q9Y6R9 Y_RNA.697-201ENST00000516776 113 ntBASIC3.38□□□□□ -1.87
CCDC61Q9Y6R9 AC046143.2-201ENST00000609789 160 ntBASIC3.38□□□□□ -1.87
CCDC61Q9Y6R9 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC3.38□□□□□ -1.87
CCDC61Q9Y6R9 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.38□□□□□ -1.87
CCDC61Q9Y6R9 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.38□□□□□ -1.87
CCDC61Q9Y6R9 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC3.38□□□□□ -1.87
CCDC61Q9Y6R9 MIR377-201ENST00000362145 69 ntBASIC3.37□□□□□ -1.87
CCDC61Q9Y6R9 SNORD114-30-201ENST00000364448 72 ntBASIC3.37□□□□□ -1.87
CCDC61Q9Y6R9 RNA5SP210-201ENST00000391034 120 ntBASIC3.37□□□□□ -1.87
CCDC61Q9Y6R9 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
CCDC61Q9Y6R9 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.37□□□□□ -1.87
CCDC61Q9Y6R9 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
CCDC61Q9Y6R9 RNU6-203P-201ENST00000384038 104 ntBASIC3.36□□□□□ -1.87
CCDC61Q9Y6R9 MIR504-201ENST00000385065 83 ntBASIC3.36□□□□□ -1.87
CCDC61Q9Y6R9 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC3.36□□□□□ -1.87
CCDC61Q9Y6R9 MIR5092-201ENST00000583139 88 ntBASIC3.36□□□□□ -1.87
CCDC61Q9Y6R9 MIR7843-201ENST00000622274 79 ntBASIC3.36□□□□□ -1.87
CCDC61Q9Y6R9 MIR1291-201ENST00000627649 87 ntBASIC3.36□□□□□ -1.87
CCDC61Q9Y6R9 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
CCDC61Q9Y6R9 RNU6-369P-201ENST00000362515 102 ntBASIC3.35□□□□□ -1.87
CCDC61Q9Y6R9 RNU6-237P-201ENST00000515985 71 ntBASIC3.35□□□□□ -1.87
CCDC61Q9Y6R9 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC3.35□□□□□ -1.87
CCDC61Q9Y6R9 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC3.34□□□□□ -1.87
CCDC61Q9Y6R9 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.34□□□□□ -1.87
CCDC61Q9Y6R9 SNORD56.5-201ENST00000364281 72 ntBASIC3.34□□□□□ -1.87
CCDC61Q9Y6R9 RNA5SP259-201ENST00000365541 109 ntBASIC3.34□□□□□ -1.87
CCDC61Q9Y6R9 MIR599-201ENST00000385069 95 ntBASIC3.34□□□□□ -1.87
CCDC61Q9Y6R9 MIR3920-201ENST00000581751 86 ntBASIC3.34□□□□□ -1.87
CCDC61Q9Y6R9 AL078603.1-201ENST00000603824 313 ntBASIC3.34□□□□□ -1.87
CCDC61Q9Y6R9 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
CCDC61Q9Y6R9 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
CCDC61Q9Y6R9 SNORD41-201ENST00000386967 70 ntBASIC3.33□□□□□ -1.88
CCDC61Q9Y6R9 SNORA31.17-201ENST00000516953 127 ntBASIC3.33□□□□□ -1.88
CCDC61Q9Y6R9 MIR1273D-201ENST00000577266 86 ntBASIC3.33□□□□□ -1.88
CCDC61Q9Y6R9 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC3.33□□□□□ -1.88
CCDC61Q9Y6R9 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC3.33□□□□□ -1.88
CCDC61Q9Y6R9 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
CCDC61Q9Y6R9 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
CCDC61Q9Y6R9 AL596028.1-201ENST00000326971 197 ntBASIC3.32□□□□□ -1.88
CCDC61Q9Y6R9 RNA5SP100-201ENST00000410903 110 ntBASIC3.32□□□□□ -1.88
CCDC61Q9Y6R9 RNA5SP59-201ENST00000410922 110 ntBASIC3.32□□□□□ -1.88
CCDC61Q9Y6R9 AC026436.1-201ENST00000510537 270 ntBASIC3.32□□□□□ -1.88
CCDC61Q9Y6R9 VTRNA2-2P-201ENST00000516091 103 ntBASIC3.32□□□□□ -1.88
CCDC61Q9Y6R9 RNU6-922P-201ENST00000516753 99 ntBASIC3.32□□□□□ -1.88
CCDC61Q9Y6R9 5S_rRNA.3-201ENST00000517021 110 ntBASIC3.32□□□□□ -1.88
CCDC61Q9Y6R9 AC138907.6-201ENST00000568401 126 ntBASIC3.32□□□□□ -1.88
CCDC61Q9Y6R9 AC138869.1-201ENST00000568623 124 ntBASIC3.32□□□□□ -1.88
CCDC61Q9Y6R9 AC103810.8-201ENST00000607347 118 ntBASIC3.32□□□□□ -1.88
CCDC61Q9Y6R9 5S_rRNA.19-201ENST00000612131 110 ntBASIC3.32□□□□□ -1.88
CCDC61Q9Y6R9 5S_rRNA.18-201ENST00000621941 110 ntBASIC3.32□□□□□ -1.88
CCDC61Q9Y6R9 RNU6-446P-201ENST00000362827 106 ntBASIC3.31□□□□□ -1.88
CCDC61Q9Y6R9 Y_RNA.258-201ENST00000364613 105 ntBASIC3.31□□□□□ -1.88
CCDC61Q9Y6R9 MIR194-1-201ENST00000384892 85 ntBASIC3.31□□□□□ -1.88
CCDC61Q9Y6R9 UBBP3-201ENST00000445497 241 ntBASIC3.31□□□□□ -1.88
CCDC61Q9Y6R9 SCARNA21.1-201ENST00000515996 128 ntBASIC3.31□□□□□ -1.88
CCDC61Q9Y6R9 AC015688.6-201ENST00000577737 104 ntBASIC3.31□□□□□ -1.88
CCDC61Q9Y6R9 MIR6082-201ENST00000613604 109 ntBASIC3.31□□□□□ -1.88
CCDC61Q9Y6R9 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
CCDC61Q9Y6R9 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC3.3□□□□□ -1.88
CCDC61Q9Y6R9 MIR513A1-201ENST00000385138 129 ntBASIC3.3□□□□□ -1.88
CCDC61Q9Y6R9 SNORD88.1-201ENST00000408684 91 ntBASIC3.3□□□□□ -1.88
CCDC61Q9Y6R9 MIR6516-201ENST00000630554 81 ntBASIC3.3□□□□□ -1.88
CCDC61Q9Y6R9 RNU6-1265P-201ENST00000516342 103 ntBASIC3.29□□□□□ -1.88
CCDC61Q9Y6R9 Evf-2_5p.1-201ENST00000614213 142 ntBASIC3.29□□□□□ -1.88
CCDC61Q9Y6R9 Y_RNA.13-201ENST00000362403 112 ntBASIC3.28□□□□□ -1.88
CCDC61Q9Y6R9 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC3.28□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 175.4 ms