Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 RNU6-1153P-201ENST00000516760 105 ntBASIC-0.3□□□□□ -2.46
CCDC40Q4G0X9 uc_338.28-201ENST00000612082 187 ntBASIC-0.3□□□□□ -2.46
CCDC40Q4G0X9 RNU6-923P-201ENST00000364753 107 ntBASIC-0.31□□□□□ -2.46
CCDC40Q4G0X9 MIR635-201ENST00000384830 98 ntBASIC-0.31□□□□□ -2.46
CCDC40Q4G0X9 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC-0.31□□□□□ -2.46
CCDC40Q4G0X9 MIR4308-201ENST00000580634 81 ntBASIC-0.31□□□□□ -2.46
CCDC40Q4G0X9 SNORA18.1-201ENST00000363418 128 ntBASIC-0.32□□□□□ -2.46
CCDC40Q4G0X9 Y_RNA.299-201ENST00000364973 94 ntBASIC-0.32□□□□□ -2.46
CCDC40Q4G0X9 SNORD58.1-201ENST00000391313 66 ntBASIC-0.32□□□□□ -2.46
CCDC40Q4G0X9 MIR548F4-201ENST00000408515 105 ntBASIC-0.32□□□□□ -2.46
CCDC40Q4G0X9 RNA5SP163-201ENST00000410304 99 ntBASIC-0.32□□□□□ -2.46
CCDC40Q4G0X9 RNU2-38P-201ENST00000410856 79 ntBASIC-0.32□□□□□ -2.46
CCDC40Q4G0X9 MTATP6P21-201ENST00000440681 189 ntBASIC-0.32□□□□□ -2.46
CCDC40Q4G0X9 RNU2-35P-201ENST00000516446 142 ntBASIC-0.32□□□□□ -2.46
CCDC40Q4G0X9 IGHVII-40-1-201ENST00000517316 58 ntBASIC-0.32□□□□□ -2.46
CCDC40Q4G0X9 MIR4677-201ENST00000584153 80 ntBASIC-0.32□□□□□ -2.46
CCDC40Q4G0X9 Y_RNA.75-201ENST00000362927 97 ntBASIC-0.33□□□□□ -2.46
CCDC40Q4G0X9 MIR214-201ENST00000385214 110 ntBASIC-0.33□□□□□ -2.46
CCDC40Q4G0X9 SNORD127-201ENST00000458892 86 ntBASIC-0.33□□□□□ -2.46
CCDC40Q4G0X9 RNU6-46P-201ENST00000383860 107 ntBASIC-0.34□□□□□ -2.46
CCDC40Q4G0X9 SNORA75.1-201ENST00000391130 148 ntBASIC-0.34□□□□□ -2.46
CCDC40Q4G0X9 RNU6ATAC11P-201ENST00000408541 125 ntBASIC-0.34□□□□□ -2.46
CCDC40Q4G0X9 RNU4-69P-201ENST00000410677 143 ntBASIC-0.34□□□□□ -2.46
CCDC40Q4G0X9 Y_RNA.98-201ENST00000363109 102 ntBASIC-0.35□□□□□ -2.47
CCDC40Q4G0X9 Y_RNA.288-201ENST00000364854 92 ntBASIC-0.35□□□□□ -2.47
CCDC40Q4G0X9 RNU6-1160P-201ENST00000384546 104 ntBASIC-0.35□□□□□ -2.47
CCDC40Q4G0X9 Y_RNA.562-201ENST00000384695 113 ntBASIC-0.35□□□□□ -2.47
CCDC40Q4G0X9 MIR329-2-201ENST00000385029 84 ntBASIC-0.35□□□□□ -2.47
CCDC40Q4G0X9 MIR599-201ENST00000385069 95 ntBASIC-0.35□□□□□ -2.47
CCDC40Q4G0X9 MIR548I2-201ENST00000408348 149 ntBASIC-0.35□□□□□ -2.47
CCDC40Q4G0X9 Y_RNA.626-201ENST00000411288 95 ntBASIC-0.35□□□□□ -2.47
CCDC40Q4G0X9 AC097635.1-201ENST00000450678 155 ntBASIC-0.35□□□□□ -2.47
CCDC40Q4G0X9 SNORD4A-201ENST00000459174 72 ntBASIC-0.35□□□□□ -2.47
CCDC40Q4G0X9 MIR1270-201ENST00000459320 83 ntBASIC-0.35□□□□□ -2.47
CCDC40Q4G0X9 SCARNA11.2-201ENST00000517183 154 ntBASIC-0.35□□□□□ -2.47
CCDC40Q4G0X9 RNU2-60P-201ENST00000517290 128 ntBASIC-0.35□□□□□ -2.47
CCDC40Q4G0X9 AC138907.4-201ENST00000570107 226 ntBASIC-0.35□□□□□ -2.47
CCDC40Q4G0X9 MIR3925-201ENST00000584674 77 ntBASIC-0.35□□□□□ -2.47
CCDC40Q4G0X9 RNU6-509P-201ENST00000363519 107 ntBASIC-0.36□□□□□ -2.47
CCDC40Q4G0X9 Y_RNA.221-201ENST00000364248 96 ntBASIC-0.36□□□□□ -2.47
CCDC40Q4G0X9 RNU6-1321P-201ENST00000390905 107 ntBASIC-0.36□□□□□ -2.47
CCDC40Q4G0X9 TRAJ51-201ENST00000504127 63 ntBASIC-0.36□□□□□ -2.47
CCDC40Q4G0X9 MIR4500-201ENST00000579472 76 ntBASIC-0.36□□□□□ -2.47
CCDC40Q4G0X9 U6.106-201ENST00000636360 105 ntBASIC-0.36□□□□□ -2.47
CCDC40Q4G0X9 Y_RNA.11-201ENST00000362375 109 ntBASIC-0.37□□□□□ -2.47
CCDC40Q4G0X9 Y_RNA.125-201ENST00000363371 111 ntBASIC-0.37□□□□□ -2.47
CCDC40Q4G0X9 RNU6-818P-201ENST00000364837 108 ntBASIC-0.37□□□□□ -2.47
CCDC40Q4G0X9 SNORD110-201ENST00000408189 75 ntBASIC-0.37□□□□□ -2.47
CCDC40Q4G0X9 MTND2P23-201ENST00000422990 651 ntBASIC-0.37□□□□□ -2.47
CCDC40Q4G0X9 RNU7-48P-201ENST00000458875 63 ntBASIC-0.37□□□□□ -2.47
CCDC40Q4G0X9 CR383656.4-201ENST00000546909 122 ntBASIC-0.37□□□□□ -2.47
CCDC40Q4G0X9 AL117187.1-201ENST00000555482 181 ntBASIC-0.37□□□□□ -2.47
CCDC40Q4G0X9 AC021443.1-201ENST00000604478 211 ntBASIC-0.37□□□□□ -2.47
CCDC40Q4G0X9 SNORD27-201ENST00000363981 72 ntBASIC-0.38□□□□□ -2.47
CCDC40Q4G0X9 RNU6-1082P-201ENST00000364574 107 ntBASIC-0.38□□□□□ -2.47
CCDC40Q4G0X9 RNU6-768P-201ENST00000384683 107 ntBASIC-0.38□□□□□ -2.47
CCDC40Q4G0X9 MIR519A1-201ENST00000385257 85 ntBASIC-0.38□□□□□ -2.47
CCDC40Q4G0X9 RNU7-164P-201ENST00000459221 62 ntBASIC-0.38□□□□□ -2.47
CCDC40Q4G0X9 RNU6-240P-201ENST00000516098 97 ntBASIC-0.38□□□□□ -2.47
CCDC40Q4G0X9 Y_RNA.20-201ENST00000362479 113 ntBASIC-0.39□□□□□ -2.47
CCDC40Q4G0X9 Y_RNA.47-201ENST00000362697 108 ntBASIC-0.39□□□□□ -2.47
CCDC40Q4G0X9 Y_RNA.65-201ENST00000362846 100 ntBASIC-0.39□□□□□ -2.47
CCDC40Q4G0X9 Y_RNA.145-201ENST00000363527 102 ntBASIC-0.39□□□□□ -2.47
CCDC40Q4G0X9 Y_RNA.149-201ENST00000363558 117 ntBASIC-0.39□□□□□ -2.47
CCDC40Q4G0X9 Y_RNA.556-201ENST00000384677 113 ntBASIC-0.39□□□□□ -2.47
CCDC40Q4G0X9 SNORD77B-201ENST00000391112 67 ntBASIC-0.39□□□□□ -2.47
CCDC40Q4G0X9 AC006210.1-201ENST00000424882 111 ntBASIC-0.39□□□□□ -2.47
CCDC40Q4G0X9 RNU7-74P-201ENST00000459104 62 ntBASIC-0.39□□□□□ -2.47
CCDC40Q4G0X9 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC-0.39□□□□□ -2.47
CCDC40Q4G0X9 RNA5SP285-201ENST00000516619 119 ntBASIC-0.39□□□□□ -2.47
CCDC40Q4G0X9 MIR3149-201ENST00000584629 83 ntBASIC-0.39□□□□□ -2.47
CCDC40Q4G0X9 SNORD114-12-201ENST00000365400 75 ntBASIC-0.4□□□□□ -2.47
CCDC40Q4G0X9 Y_RNA.435-201ENST00000384095 112 ntBASIC-0.4□□□□□ -2.47
CCDC40Q4G0X9 Y_RNA.478-201ENST00000384358 107 ntBASIC-0.4□□□□□ -2.47
CCDC40Q4G0X9 MIR206-201ENST00000384872 86 ntBASIC-0.4□□□□□ -2.47
CCDC40Q4G0X9 SNORA75.5-201ENST00000391291 81 ntBASIC-0.4□□□□□ -2.47
CCDC40Q4G0X9 Y_RNA.604-201ENST00000410574 102 ntBASIC-0.4□□□□□ -2.47
CCDC40Q4G0X9 MIR148A-201ENST00000362215 68 ntBASIC-0.41□□□□□ -2.48
CCDC40Q4G0X9 RNU6-312P-201ENST00000364629 107 ntBASIC-0.41□□□□□ -2.48
CCDC40Q4G0X9 Y_RNA.337-201ENST00000365312 102 ntBASIC-0.41□□□□□ -2.48
CCDC40Q4G0X9 Y_RNA.448-201ENST00000384185 108 ntBASIC-0.41□□□□□ -2.48
CCDC40Q4G0X9 MIR876-201ENST00000401147 81 ntBASIC-0.41□□□□□ -2.48
CCDC40Q4G0X9 Y_RNA.793-201ENST00000411222 111 ntBASIC-0.41□□□□□ -2.48
CCDC40Q4G0X9 HMGN2P22-201ENST00000427588 175 ntBASIC-0.41□□□□□ -2.48
CCDC40Q4G0X9 AC107027.2-201ENST00000512197 115 ntBASIC-0.41□□□□□ -2.48
CCDC40Q4G0X9 RNU7-123P-201ENST00000515911 60 ntBASIC-0.41□□□□□ -2.48
CCDC40Q4G0X9 NAMPTP3-201ENST00000569273 224 ntBASIC-0.41□□□□□ -2.48
CCDC40Q4G0X9 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC-0.41□□□□□ -2.48
CCDC40Q4G0X9 AC084368.1-201ENST00000620935 65 ntBASIC-0.41□□□□□ -2.48
CCDC40Q4G0X9 MIR6514-201ENST00000622549 70 ntBASIC-0.41□□□□□ -2.48
CCDC40Q4G0X9 AP001362.1-201ENST00000625165 124 ntBASIC-0.41□□□□□ -2.48
CCDC40Q4G0X9 Y_RNA.127-201ENST00000363386 109 ntBASIC-0.42□□□□□ -2.48
CCDC40Q4G0X9 Y_RNA.298-201ENST00000364960 107 ntBASIC-0.42□□□□□ -2.48
CCDC40Q4G0X9 Y_RNA.323-201ENST00000365157 109 ntBASIC-0.42□□□□□ -2.48
CCDC40Q4G0X9 Y_RNA.497-201ENST00000384447 98 ntBASIC-0.42□□□□□ -2.48
CCDC40Q4G0X9 AC109327.2-201ENST00000448339 378 ntBASIC-0.42□□□□□ -2.48
CCDC40Q4G0X9 RNU4-71P-201ENST00000516258 113 ntBASIC-0.42□□□□□ -2.48
CCDC40Q4G0X9 SNORA25.13-201ENST00000516395 103 ntBASIC-0.42□□□□□ -2.48
CCDC40Q4G0X9 MIR3920-201ENST00000581751 86 ntBASIC-0.42□□□□□ -2.48
CCDC40Q4G0X9 MIR6759-201ENST00000638110 65 ntBASIC-0.42□□□□□ -2.48
Retrieved 100 of 98,524 protein–RNA pairs in 202.9 ms