Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 Y_RNA.708-201ENST00000516950 96 ntBASIC-1.04□□□□□ -2.58
CHD9Q3L8U1 Y_RNA.812-201ENST00000610788 101 ntBASIC-1.04□□□□□ -2.58
CHD9Q3L8U1 PART1_1.1-201ENST00000611761 217 ntBASIC-1.04□□□□□ -2.58
CHD9Q3L8U1 AC093783.1-201ENST00000612976 329 ntBASIC-1.04□□□□□ -2.58
CHD9Q3L8U1 Y_RNA.784-201ENST00000613803 101 ntBASIC-1.04□□□□□ -2.58
CHD9Q3L8U1 Y_RNA.787-201ENST00000616522 101 ntBASIC-1.04□□□□□ -2.58
CHD9Q3L8U1 Y_RNA.780-201ENST00000617336 101 ntBASIC-1.04□□□□□ -2.58
CHD9Q3L8U1 Y_RNA.801-201ENST00000619005 101 ntBASIC-1.04□□□□□ -2.58
CHD9Q3L8U1 SNORD115-33-201ENST00000363723 82 ntBASIC-1.05□□□□□ -2.58
CHD9Q3L8U1 AL606845.1-201ENST00000404881 255 ntBASIC-1.05□□□□□ -2.58
CHD9Q3L8U1 RNU7-137P-201ENST00000516788 62 ntBASIC-1.05□□□□□ -2.58
CHD9Q3L8U1 SNORD36A-201ENST00000362874 73 ntBASIC-1.05□□□□□ -2.58
CHD9Q3L8U1 SNORD113-6-201ENST00000363345 75 ntBASIC-1.05□□□□□ -2.58
CHD9Q3L8U1 MIR513C-201ENST00000401352 84 ntBASIC-1.05□□□□□ -2.58
CHD9Q3L8U1 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC-1.05□□□□□ -2.58
CHD9Q3L8U1 Y_RNA.655-201ENST00000515919 96 ntBASIC-1.05□□□□□ -2.58
CHD9Q3L8U1 Y_RNA.207-201ENST00000364142 106 ntBASIC-1.06□□□□□ -2.58
CHD9Q3L8U1 MIR513B-201ENST00000385136 84 ntBASIC-1.06□□□□□ -2.58
CHD9Q3L8U1 SEPT14P8-201ENST00000508026 178 ntBASIC-1.06□□□□□ -2.58
CHD9Q3L8U1 RNU6-1258P-201ENST00000516911 111 ntBASIC-1.06□□□□□ -2.58
CHD9Q3L8U1 SNORD113-5-201ENST00000607261 78 ntBASIC-1.06□□□□□ -2.58
CHD9Q3L8U1 MIR6841-201ENST00000637129 72 ntBASIC-1.06□□□□□ -2.58
CHD9Q3L8U1 SNORD67.1-201ENST00000516618 108 ntBASIC-1.06□□□□□ -2.58
CHD9Q3L8U1 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC-1.06□□□□□ -2.58
CHD9Q3L8U1 RNU6-1128P-201ENST00000362825 109 ntBASIC-1.06□□□□□ -2.58
CHD9Q3L8U1 Y_RNA.143-201ENST00000363520 106 ntBASIC-1.06□□□□□ -2.58
CHD9Q3L8U1 Y_RNA.342-201ENST00000365352 113 ntBASIC-1.06□□□□□ -2.58
CHD9Q3L8U1 MIR29B1-201ENST00000385015 81 ntBASIC-1.06□□□□□ -2.58
CHD9Q3L8U1 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC-1.07□□□□□ -2.58
CHD9Q3L8U1 AL365205.2-201ENST00000594586 68 ntBASIC-1.07□□□□□ -2.58
CHD9Q3L8U1 RNU6-170P-201ENST00000362832 104 ntBASIC-1.07□□□□□ -2.58
CHD9Q3L8U1 Y_RNA.162-201ENST00000363683 102 ntBASIC-1.07□□□□□ -2.58
CHD9Q3L8U1 RNU6-1090P-201ENST00000364065 94 ntBASIC-1.07□□□□□ -2.58
CHD9Q3L8U1 RNU6-704P-201ENST00000364162 103 ntBASIC-1.07□□□□□ -2.58
CHD9Q3L8U1 Y_RNA.215-201ENST00000364204 112 ntBASIC-1.07□□□□□ -2.58
CHD9Q3L8U1 Y_RNA.634-201ENST00000364811 113 ntBASIC-1.07□□□□□ -2.58
CHD9Q3L8U1 Y_RNA.418-201ENST00000384029 102 ntBASIC-1.07□□□□□ -2.58
CHD9Q3L8U1 SEPT14P3-201ENST00000439401 183 ntBASIC-1.07□□□□□ -2.58
CHD9Q3L8U1 AL732372.2-207ENST00000445840 183 ntBASIC-1.07□□□□□ -2.58
CHD9Q3L8U1 SEPT14P2-201ENST00000453405 183 ntBASIC-1.07□□□□□ -2.58
CHD9Q3L8U1 SEPT14P4-201ENST00000513445 186 ntBASIC-1.07□□□□□ -2.58
CHD9Q3L8U1 FO082796.1-201ENST00000523795 183 ntBASIC-1.07□□□□□ -2.58
CHD9Q3L8U1 MIR3942-201ENST00000585264 109 ntBASIC-1.07□□□□□ -2.58
CHD9Q3L8U1 AC005014.2-201ENST00000607795 599 ntBASIC-1.07□□□□□ -2.58
CHD9Q3L8U1 MIR3662-201ENST00000637030 95 ntBASIC-1.07□□□□□ -2.58
CHD9Q3L8U1 RNU6-987P-201ENST00000384759 104 ntBASIC-1.08□□□□□ -2.58
CHD9Q3L8U1 RNA5SP144-201ENST00000410846 116 ntBASIC-1.08□□□□□ -2.58
CHD9Q3L8U1 MIR2113-201ENST00000459007 91 ntBASIC-1.08□□□□□ -2.58
CHD9Q3L8U1 MTND2P31-201ENST00000512602 616 ntBASIC-1.08□□□□□ -2.58
CHD9Q3L8U1 RNU6-397P-201ENST00000516226 104 ntBASIC-1.08□□□□□ -2.58
CHD9Q3L8U1 MRPS36P3-201ENST00000519284 130 ntBASIC-1.08□□□□□ -2.58
CHD9Q3L8U1 MIR4756-201ENST00000577874 78 ntBASIC-1.08□□□□□ -2.58
CHD9Q3L8U1 SNORA15B-2-201ENST00000384058 135 ntBASIC-1.08□□□□□ -2.58
CHD9Q3L8U1 SNORA15B-1-201ENST00000384334 135 ntBASIC-1.08□□□□□ -2.58
CHD9Q3L8U1 MIR1270-201ENST00000459320 83 ntBASIC-1.08□□□□□ -2.58
CHD9Q3L8U1 Evf-2_5p.1-201ENST00000614213 142 ntBASIC-1.08□□□□□ -2.58
CHD9Q3L8U1 MIR548O2-201ENST00000616090 70 ntBASIC-1.08□□□□□ -2.58
CHD9Q3L8U1 RNU6-1290P-201ENST00000362957 109 ntBASIC-1.09□□□□□ -2.58
CHD9Q3L8U1 Y_RNA.182-201ENST00000363880 111 ntBASIC-1.09□□□□□ -2.58
CHD9Q3L8U1 RNU6-1283P-201ENST00000365314 105 ntBASIC-1.09□□□□□ -2.58
CHD9Q3L8U1 RNU6-243P-201ENST00000391140 107 ntBASIC-1.09□□□□□ -2.58
CHD9Q3L8U1 RNU4-61P-201ENST00000411243 107 ntBASIC-1.09□□□□□ -2.58
CHD9Q3L8U1 RNU6-592P-201ENST00000411333 103 ntBASIC-1.09□□□□□ -2.58
CHD9Q3L8U1 MTND1P2-201ENST00000430604 821 ntBASIC-1.09□□□□□ -2.58
CHD9Q3L8U1 Y_RNA.296-201ENST00000364930 108 ntBASIC-1.09□□□□□ -2.58
CHD9Q3L8U1 Y_RNA.470-201ENST00000384307 117 ntBASIC-1.09□□□□□ -2.58
CHD9Q3L8U1 Y_RNA.491-201ENST00000384417 107 ntBASIC-1.09□□□□□ -2.58
CHD9Q3L8U1 Y_RNA.513-201ENST00000384522 100 ntBASIC-1.09□□□□□ -2.58
CHD9Q3L8U1 RNU6-308P-201ENST00000390957 107 ntBASIC-1.09□□□□□ -2.58
CHD9Q3L8U1 RNU2-31P-201ENST00000516954 155 ntBASIC-1.09□□□□□ -2.58
CHD9Q3L8U1 RN7SKP295-201ENST00000517264 153 ntBASIC-1.09□□□□□ -2.58
CHD9Q3L8U1 AC024909.2-201ENST00000553035 286 ntBASIC-1.09□□□□□ -2.58
CHD9Q3L8U1 AC005899.2-201ENST00000584353 90 ntBASIC-1.09□□□□□ -2.58
CHD9Q3L8U1 MIR1321-201ENST00000637766 79 ntBASIC-1.09□□□□□ -2.58
CHD9Q3L8U1 Y_RNA.570-201ENST00000384750 101 ntBASIC-1.1□□□□□ -2.58
CHD9Q3L8U1 U6.100-201ENST00000636230 99 ntBASIC-1.1□□□□□ -2.58
CHD9Q3L8U1 Y_RNA.360-201ENST00000365512 102 ntBASIC-1.1□□□□□ -2.59
CHD9Q3L8U1 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC-1.1□□□□□ -2.59
CHD9Q3L8U1 Y_RNA.809-201ENST00000516058 95 ntBASIC-1.1□□□□□ -2.59
CHD9Q3L8U1 RNU7-110P-201ENST00000516891 62 ntBASIC-1.1□□□□□ -2.59
CHD9Q3L8U1 U2.1-201ENST00000618978 145 ntBASIC-1.1□□□□□ -2.59
CHD9Q3L8U1 AP001362.1-201ENST00000625165 124 ntBASIC-1.1□□□□□ -2.59
CHD9Q3L8U1 RNU6-1085P-201ENST00000363576 107 ntBASIC-1.1□□□□□ -2.59
CHD9Q3L8U1 Y_RNA.301-201ENST00000364990 103 ntBASIC-1.1□□□□□ -2.59
CHD9Q3L8U1 Y_RNA.340-201ENST00000365330 92 ntBASIC-1.1□□□□□ -2.59
CHD9Q3L8U1 SNORD101-201ENST00000384027 73 ntBASIC-1.1□□□□□ -2.59
CHD9Q3L8U1 AL009048.1-201ENST00000450437 298 ntBASIC-1.1□□□□□ -2.59
CHD9Q3L8U1 HSPE1P25-201ENST00000455484 251 ntBASIC-1.1□□□□□ -2.59
CHD9Q3L8U1 RNU6-256P-201ENST00000516747 97 ntBASIC-1.1□□□□□ -2.59
CHD9Q3L8U1 RNU6-1088P-201ENST00000516850 104 ntBASIC-1.1□□□□□ -2.59
CHD9Q3L8U1 RNU6-1314P-201ENST00000517139 104 ntBASIC-1.1□□□□□ -2.59
CHD9Q3L8U1 AL050303.3-201ENST00000613704 284 ntBASIC-1.1□□□□□ -2.59
CHD9Q3L8U1 MIR514A2-201ENST00000385131 88 ntBASIC-1.11□□□□□ -2.59
CHD9Q3L8U1 MIR514A3-201ENST00000385132 88 ntBASIC-1.11□□□□□ -2.59
CHD9Q3L8U1 RNU6-466P-201ENST00000391224 103 ntBASIC-1.11□□□□□ -2.59
CHD9Q3L8U1 PMCHL1-202ENST00000423102 261 ntBASIC-1.11□□□□□ -2.59
CHD9Q3L8U1 SNORD11.1-201ENST00000459482 85 ntBASIC-1.11□□□□□ -2.59
CHD9Q3L8U1 RNU6-1129P-201ENST00000515964 104 ntBASIC-1.11□□□□□ -2.59
CHD9Q3L8U1 RNU4ATAC7P-201ENST00000516280 125 ntBASIC-1.11□□□□□ -2.59
CHD9Q3L8U1 MIR548AE2-201ENST00000583456 67 ntBASIC-1.11□□□□□ -2.59
Retrieved 100 of 98,524 protein–RNA pairs in 201.5 ms