Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC1.87□□□□□ -2.11
EPHB3P54753 MIR1302-7-201ENST00000408841 72 ntBASIC1.87□□□□□ -2.11
EPHB3P54753 HMGN2P19-201ENST00000425149 265 ntBASIC1.87□□□□□ -2.11
EPHB3P54753 JTBP1-201ENST00000441314 247 ntBASIC1.87□□□□□ -2.11
EPHB3P54753 RNU6-315P-201ENST00000362666 107 ntBASIC1.86□□□□□ -2.11
EPHB3P54753 MIR676-201ENST00000390702 67 ntBASIC1.86□□□□□ -2.11
EPHB3P54753 RNA5SP338-201ENST00000410495 85 ntBASIC1.86□□□□□ -2.11
EPHB3P54753 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.86□□□□□ -2.11
EPHB3P54753 SNORD4B-201ENST00000459083 72 ntBASIC1.86□□□□□ -2.11
EPHB3P54753 MIR3192-201ENST00000584920 77 ntBASIC1.86□□□□□ -2.11
EPHB3P54753 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.86□□□□□ -2.11
EPHB3P54753 MIR502-201ENST00000606349 86 ntBASIC1.86□□□□□ -2.11
EPHB3P54753 AL512598.1-201ENST00000610158 273 ntBASIC1.86□□□□□ -2.11
EPHB3P54753 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC1.86□□□□□ -2.11
EPHB3P54753 AC008163.1-202ENST00000636004 2889 ntBASIC1.85□□□□□ -2.11
EPHB3P54753 RNA5SP259-201ENST00000365541 109 ntBASIC1.85□□□□□ -2.11
EPHB3P54753 RNU6-571P-201ENST00000384128 107 ntBASIC1.85□□□□□ -2.11
EPHB3P54753 MIR588-201ENST00000384900 83 ntBASIC1.85□□□□□ -2.11
EPHB3P54753 MIR1236-201ENST00000408340 102 ntBASIC1.85□□□□□ -2.11
EPHB3P54753 RNU6ATAC42P-201ENST00000408637 95 ntBASIC1.85□□□□□ -2.11
EPHB3P54753 RNU4-83P-201ENST00000410863 133 ntBASIC1.85□□□□□ -2.11
EPHB3P54753 SNORD13-201ENST00000459299 104 ntBASIC1.85□□□□□ -2.11
EPHB3P54753 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.85□□□□□ -2.11
EPHB3P54753 AL357312.1-201ENST00000603879 298 ntBASIC1.85□□□□□ -2.11
EPHB3P54753 AC103810.8-201ENST00000607347 118 ntBASIC1.85□□□□□ -2.11
EPHB3P54753 AL096861.1-201ENST00000610899 123 ntBASIC1.85□□□□□ -2.11
EPHB3P54753 Y_RNA.57-201ENST00000362806 113 ntBASIC1.84□□□□□ -2.11
EPHB3P54753 MT-TN-201ENST00000387400 73 ntBASIC1.84□□□□□ -2.11
EPHB3P54753 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.84□□□□□ -2.11
EPHB3P54753 AC108667.1-201ENST00000428618 249 ntBASIC1.84□□□□□ -2.11
EPHB3P54753 RNU6-850P-201ENST00000516934 103 ntBASIC1.84□□□□□ -2.11
EPHB3P54753 RNA5SP364-201ENST00000516938 78 ntBASIC1.84□□□□□ -2.11
EPHB3P54753 MIR4264-201ENST00000583520 66 ntBASIC1.84□□□□□ -2.11
EPHB3P54753 SNORA4-201ENST00000584302 138 ntBASIC1.84□□□□□ -2.11
EPHB3P54753 MIR6740-201ENST00000618268 113 ntBASIC1.84□□□□□ -2.11
EPHB3P54753 MIR30D-201ENST00000362283 70 ntBASIC1.83□□□□□ -2.12
EPHB3P54753 RNU6-1229P-201ENST00000364295 107 ntBASIC1.83□□□□□ -2.12
EPHB3P54753 RNU6-396P-201ENST00000365369 105 ntBASIC1.83□□□□□ -2.12
EPHB3P54753 Y_RNA.648-201ENST00000459455 110 ntBASIC1.83□□□□□ -2.12
EPHB3P54753 AC139453.2-201ENST00000487255 133 ntBASIC1.83□□□□□ -2.12
EPHB3P54753 SNORA25.13-201ENST00000516395 103 ntBASIC1.83□□□□□ -2.12
EPHB3P54753 RNU6-922P-201ENST00000516753 99 ntBASIC1.83□□□□□ -2.12
EPHB3P54753 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.83□□□□□ -2.12
EPHB3P54753 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.82□□□□□ -2.12
EPHB3P54753 RNU6-624P-201ENST00000363411 107 ntBASIC1.82□□□□□ -2.12
EPHB3P54753 RNU6-129P-201ENST00000391022 107 ntBASIC1.82□□□□□ -2.12
EPHB3P54753 HSPE1P24-201ENST00000450782 238 ntBASIC1.82□□□□□ -2.12
EPHB3P54753 RNU7-85P-201ENST00000458851 63 ntBASIC1.82□□□□□ -2.12
EPHB3P54753 RNU7-153P-201ENST00000516455 62 ntBASIC1.82□□□□□ -2.12
EPHB3P54753 MIR4419B-201ENST00000577260 68 ntBASIC1.82□□□□□ -2.12
EPHB3P54753 AC015688.6-201ENST00000577737 104 ntBASIC1.82□□□□□ -2.12
EPHB3P54753 MIR4500-201ENST00000579472 76 ntBASIC1.82□□□□□ -2.12
EPHB3P54753 AC012493.3-201ENST00000604494 112 ntBASIC1.82□□□□□ -2.12
EPHB3P54753 AC145423.2-201ENST00000610631 239 ntBASIC1.82□□□□□ -2.12
EPHB3P54753 U6.109-201ENST00000636749 87 ntBASIC1.82□□□□□ -2.12
EPHB3P54753 Y_RNA.338-201ENST00000365320 114 ntBASIC1.81□□□□□ -2.12
EPHB3P54753 SNORA17.3-201ENST00000391159 129 ntBASIC1.81□□□□□ -2.12
EPHB3P54753 RNU6-1165P-201ENST00000410119 107 ntBASIC1.81□□□□□ -2.12
EPHB3P54753 MIR2115-201ENST00000516657 100 ntBASIC1.81□□□□□ -2.12
EPHB3P54753 AP003716.2-201ENST00000528260 108 ntBASIC1.81□□□□□ -2.12
EPHB3P54753 MIR4255-201ENST00000579351 72 ntBASIC1.81□□□□□ -2.12
EPHB3P54753 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.81□□□□□ -2.12
EPHB3P54753 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.8□□□□□ -2.12
EPHB3P54753 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
EPHB3P54753 Y_RNA.119-201ENST00000363301 96 ntBASIC1.8□□□□□ -2.12
EPHB3P54753 RNU6-478P-201ENST00000363904 110 ntBASIC1.8□□□□□ -2.12
EPHB3P54753 RNU6-439P-201ENST00000384188 106 ntBASIC1.8□□□□□ -2.12
EPHB3P54753 MT-TF-201ENST00000387314 71 ntBASIC1.8□□□□□ -2.12
EPHB3P54753 SNORA67.5-201ENST00000391036 107 ntBASIC1.8□□□□□ -2.12
EPHB3P54753 MIR889-201ENST00000401280 79 ntBASIC1.8□□□□□ -2.12
EPHB3P54753 snoU13.25-201ENST00000458945 104 ntBASIC1.8□□□□□ -2.12
EPHB3P54753 GHRLOS.1-201ENST00000610995 70 ntBASIC1.8□□□□□ -2.12
EPHB3P54753 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.79□□□□□ -2.12
EPHB3P54753 MIR377-201ENST00000362145 69 ntBASIC1.79□□□□□ -2.12
EPHB3P54753 RNU4-32P-201ENST00000363404 141 ntBASIC1.79□□□□□ -2.12
EPHB3P54753 RN7SL274P-201ENST00000492268 272 ntBASIC1.79□□□□□ -2.12
EPHB3P54753 RNU6-557P-201ENST00000516842 110 ntBASIC1.79□□□□□ -2.12
EPHB3P54753 SNORA44.1-201ENST00000517031 108 ntBASIC1.79□□□□□ -2.12
EPHB3P54753 MIR3198-2-201ENST00000577868 80 ntBASIC1.79□□□□□ -2.12
EPHB3P54753 SNORA77B-201ENST00000578179 125 ntBASIC1.79□□□□□ -2.12
EPHB3P54753 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.78□□□□□ -2.12
EPHB3P54753 MIR378A-201ENST00000362177 66 ntBASIC1.78□□□□□ -2.12
EPHB3P54753 BX276092.1-201ENST00000427368 251 ntBASIC1.78□□□□□ -2.12
EPHB3P54753 RNU7-62P-201ENST00000458856 62 ntBASIC1.78□□□□□ -2.12
EPHB3P54753 AC005908.1-201ENST00000468701 347 ntBASIC1.78□□□□□ -2.12
EPHB3P54753 RPL30P7-201ENST00000479312 323 ntBASIC1.78□□□□□ -2.12
EPHB3P54753 RNU11-2P-201ENST00000516898 142 ntBASIC1.78□□□□□ -2.12
EPHB3P54753 SNORA25.3-201ENST00000363205 127 ntBASIC1.77□□□□□ -2.13
EPHB3P54753 SNORA72.6-201ENST00000384520 129 ntBASIC1.77□□□□□ -2.13
EPHB3P54753 RNA5SP489-201ENST00000410986 109 ntBASIC1.77□□□□□ -2.13
EPHB3P54753 SNORD36A-201ENST00000362874 73 ntBASIC1.76□□□□□ -2.13
EPHB3P54753 Y_RNA.508-201ENST00000384502 114 ntBASIC1.76□□□□□ -2.13
EPHB3P54753 MIR30A-201ENST00000385092 71 ntBASIC1.76□□□□□ -2.13
EPHB3P54753 RNU6-205P-201ENST00000390858 107 ntBASIC1.76□□□□□ -2.13
EPHB3P54753 SUMO2P12-201ENST00000405924 140 ntBASIC1.76□□□□□ -2.13
EPHB3P54753 AL450471.1-201ENST00000447509 127 ntBASIC1.76□□□□□ -2.13
EPHB3P54753 snoU13.11-201ENST00000459219 104 ntBASIC1.76□□□□□ -2.13
EPHB3P54753 AC008834.1-201ENST00000511612 175 ntBASIC1.76□□□□□ -2.13
EPHB3P54753 uc_338.6-201ENST00000613544 171 ntBASIC1.76□□□□□ -2.13
EPHB3P54753 U7.4-201ENST00000614961 63 ntBASIC1.76□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 187.8 ms