Protein–RNA interactions for Protein: P48436

SOX9, Transcription factor SOX-9, humanhuman

Predictions only

Length 509 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX9P48436 AP001362.1-201ENST00000625165 124 ntBASIC1.57□□□□□ -2.16
SOX9P48436 RNU6-1313P-201ENST00000362622 102 ntBASIC1.56□□□□□ -2.16
SOX9P48436 RNU6-392P-201ENST00000364926 101 ntBASIC1.56□□□□□ -2.16
SOX9P48436 SNORD26-201ENST00000384147 75 ntBASIC1.56□□□□□ -2.16
SOX9P48436 RNU6-42P-201ENST00000384165 107 ntBASIC1.56□□□□□ -2.16
SOX9P48436 AC002429.1-201ENST00000437672 148 ntBASIC1.56□□□□□ -2.16
SOX9P48436 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC1.56□□□□□ -2.16
SOX9P48436 RNU7-185P-201ENST00000459215 60 ntBASIC1.56□□□□□ -2.16
SOX9P48436 snoU13.21-201ENST00000459368 105 ntBASIC1.56□□□□□ -2.16
SOX9P48436 AL157834.3-201ENST00000615543 103 ntBASIC1.56□□□□□ -2.16
SOX9P48436 ZNF209P-201ENST00000593450 2304 ntBASIC1.56□□□□□ -2.16
SOX9P48436 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.55□□□□□ -2.16
SOX9P48436 RNU6-766P-201ENST00000362478 107 ntBASIC1.55□□□□□ -2.16
SOX9P48436 Y_RNA.78-201ENST00000362970 110 ntBASIC1.55□□□□□ -2.16
SOX9P48436 RNY1P2-201ENST00000364820 117 ntBASIC1.55□□□□□ -2.16
SOX9P48436 RNU1-36P-201ENST00000365130 165 ntBASIC1.55□□□□□ -2.16
SOX9P48436 RNU6-997P-201ENST00000384725 107 ntBASIC1.55□□□□□ -2.16
SOX9P48436 MIR517C-201ENST00000385103 95 ntBASIC1.55□□□□□ -2.16
SOX9P48436 AL354695.1-201ENST00000427935 228 ntBASIC1.55□□□□□ -2.16
SOX9P48436 SNORA31.24-201ENST00000517232 57 ntBASIC1.55□□□□□ -2.16
SOX9P48436 U6.109-201ENST00000636749 87 ntBASIC1.55□□□□□ -2.16
SOX9P48436 RNU6-403P-201ENST00000363163 104 ntBASIC1.54□□□□□ -2.16
SOX9P48436 RNU6-832P-201ENST00000363319 107 ntBASIC1.54□□□□□ -2.16
SOX9P48436 RNU6-147P-201ENST00000383983 107 ntBASIC1.54□□□□□ -2.16
SOX9P48436 SNORA72.6-201ENST00000384520 129 ntBASIC1.54□□□□□ -2.16
SOX9P48436 RNU6ATAC33P-201ENST00000408647 126 ntBASIC1.54□□□□□ -2.16
SOX9P48436 RNU4-83P-201ENST00000410863 133 ntBASIC1.54□□□□□ -2.16
SOX9P48436 RPS26P5-201ENST00000418544 335 ntBASIC1.54□□□□□ -2.16
SOX9P48436 RNU7-40P-201ENST00000516397 64 ntBASIC1.54□□□□□ -2.16
SOX9P48436 AL078603.1-201ENST00000603824 313 ntBASIC1.54□□□□□ -2.16
SOX9P48436 AL442128.1-201ENST00000615151 90 ntBASIC1.54□□□□□ -2.16
SOX9P48436 MIR1-1-201ENST00000362147 71 ntBASIC1.53□□□□□ -2.16
SOX9P48436 RNA5SP133-201ENST00000363368 119 ntBASIC1.53□□□□□ -2.16
SOX9P48436 RNU6-1099P-201ENST00000363533 107 ntBASIC1.53□□□□□ -2.16
SOX9P48436 Y_RNA.191-201ENST00000363972 113 ntBASIC1.53□□□□□ -2.16
SOX9P48436 RNU6-32P-201ENST00000383948 107 ntBASIC1.53□□□□□ -2.16
SOX9P48436 RNU6-1201P-201ENST00000384227 107 ntBASIC1.53□□□□□ -2.16
SOX9P48436 RNU6-13P-201ENST00000384248 107 ntBASIC1.53□□□□□ -2.16
SOX9P48436 RNU6-12P-201ENST00000384604 107 ntBASIC1.53□□□□□ -2.16
SOX9P48436 RNU6-41P-201ENST00000384741 107 ntBASIC1.53□□□□□ -2.16
SOX9P48436 MIR577-201ENST00000385196 96 ntBASIC1.53□□□□□ -2.16
SOX9P48436 MIR100-201ENST00000385259 80 ntBASIC1.53□□□□□ -2.16
SOX9P48436 MIR376B-201ENST00000614515 100 ntBASIC1.53□□□□□ -2.16
SOX9P48436 AC027335.2-201ENST00000624030 375 ntBASIC1.53□□□□□ -2.16
SOX9P48436 MIR26B-201ENST00000362251 77 ntBASIC1.52□□□□□ -2.17
SOX9P48436 Y_RNA.377-201ENST00000365644 108 ntBASIC1.52□□□□□ -2.17
SOX9P48436 MIR34C-201ENST00000384831 77 ntBASIC1.52□□□□□ -2.17
SOX9P48436 RNU6-1307P-201ENST00000391012 103 ntBASIC1.52□□□□□ -2.17
SOX9P48436 Y_RNA.659-201ENST00000515994 113 ntBASIC1.52□□□□□ -2.17
SOX9P48436 RNA5SP220-201ENST00000516298 104 ntBASIC1.52□□□□□ -2.17
SOX9P48436 5S_rRNA.15-201ENST00000611169 127 ntBASIC1.52□□□□□ -2.17
SOX9P48436 SNORD38.1-201ENST00000363863 68 ntBASIC1.51□□□□□ -2.17
SOX9P48436 RNU6-364P-201ENST00000384387 107 ntBASIC1.51□□□□□ -2.17
SOX9P48436 Y_RNA.544-201ENST00000384650 113 ntBASIC1.51□□□□□ -2.17
SOX9P48436 MIR1304-201ENST00000408243 91 ntBASIC1.51□□□□□ -2.17
SOX9P48436 AL353813.1-201ENST00000440700 253 ntBASIC1.51□□□□□ -2.17
SOX9P48436 RNU6-977P-201ENST00000516411 103 ntBASIC1.51□□□□□ -2.17
SOX9P48436 MTND5P40-201ENST00000559945 246 ntBASIC1.51□□□□□ -2.17
SOX9P48436 AC138749.4-201ENST00000563970 127 ntBASIC1.51□□□□□ -2.17
SOX9P48436 MIR4491-201ENST00000581087 68 ntBASIC1.51□□□□□ -2.17
SOX9P48436 MIR4452-201ENST00000583004 71 ntBASIC1.51□□□□□ -2.17
SOX9P48436 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC1.51□□□□□ -2.17
SOX9P48436 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.51□□□□□ -2.17
SOX9P48436 SNORD45B-201ENST00000364617 72 ntBASIC1.5□□□□□ -2.17
SOX9P48436 MIR125B2-201ENST00000385128 89 ntBASIC1.5□□□□□ -2.17
SOX9P48436 Y_RNA.601-201ENST00000410500 113 ntBASIC1.5□□□□□ -2.17
SOX9P48436 AC015818.7-201ENST00000428754 109 ntBASIC1.5□□□□□ -2.17
SOX9P48436 FABP5P4-201ENST00000437203 171 ntBASIC1.5□□□□□ -2.17
SOX9P48436 AC087499.7-201ENST00000441958 109 ntBASIC1.5□□□□□ -2.17
SOX9P48436 RNU6-904P-201ENST00000516206 101 ntBASIC1.5□□□□□ -2.17
SOX9P48436 AL136317.1-201ENST00000612653 226 ntBASIC1.5□□□□□ -2.17
SOX9P48436 MIR6734-201ENST00000621166 68 ntBASIC1.5□□□□□ -2.17
SOX9P48436 RNU4-58P-201ENST00000363192 141 ntBASIC1.49□□□□□ -2.17
SOX9P48436 Y_RNA.119-201ENST00000363301 96 ntBASIC1.49□□□□□ -2.17
SOX9P48436 SPINT5P-201ENST00000448174 155 ntBASIC1.49□□□□□ -2.17
SOX9P48436 UBL5P1-201ENST00000507979 193 ntBASIC1.49□□□□□ -2.17
SOX9P48436 MIR4500-201ENST00000579472 76 ntBASIC1.49□□□□□ -2.17
SOX9P48436 MIR4676-201ENST00000583078 72 ntBASIC1.49□□□□□ -2.17
SOX9P48436 Y_RNA.818-201ENST00000618813 71 ntBASIC1.49□□□□□ -2.17
SOX9P48436 AL353770.2-201ENST00000620024 78 ntBASIC1.49□□□□□ -2.17
SOX9P48436 Y_RNA.495-201ENST00000384435 112 ntBASIC1.48□□□□□ -2.17
SOX9P48436 MIR200A-201ENST00000384875 90 ntBASIC1.48□□□□□ -2.17
SOX9P48436 MIR590-201ENST00000385008 97 ntBASIC1.48□□□□□ -2.17
SOX9P48436 MIR938-201ENST00000401216 83 ntBASIC1.48□□□□□ -2.17
SOX9P48436 SNORA19.1-201ENST00000410656 129 ntBASIC1.48□□□□□ -2.17
SOX9P48436 SCARNA23-201ENST00000516060 130 ntBASIC1.48□□□□□ -2.17
SOX9P48436 RNA5SP480-201ENST00000516840 109 ntBASIC1.48□□□□□ -2.17
SOX9P48436 RNA5SP102-201ENST00000516865 106 ntBASIC1.48□□□□□ -2.17
SOX9P48436 RNU7-156P-201ENST00000517214 74 ntBASIC1.48□□□□□ -2.17
SOX9P48436 MIR19B1-201ENST00000384829 87 ntBASIC1.47□□□□□ -2.17
SOX9P48436 AC004941.2-201ENST00000427009 228 ntBASIC1.47□□□□□ -2.17
SOX9P48436 RNU1-123P-201ENST00000458950 160 ntBASIC1.47□□□□□ -2.17
SOX9P48436 MIR3613-201ENST00000579844 87 ntBASIC1.47□□□□□ -2.17
SOX9P48436 AC090897.1-201ENST00000580909 226 ntBASIC1.47□□□□□ -2.17
SOX9P48436 AC020891.4-201ENST00000605745 93 ntBASIC1.47□□□□□ -2.17
SOX9P48436 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.47□□□□□ -2.17
SOX9P48436 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
SOX9P48436 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.46□□□□□ -2.18
SOX9P48436 Y_RNA.540-201ENST00000384638 111 ntBASIC1.46□□□□□ -2.18
SOX9P48436 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC1.46□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 8.9 ms