Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 AC009779.6-201ENST00000603972 165 ntBASIC0.09□□□□□ -2.4
SDC3O75056 AC098479.1-201ENST00000609225 154 ntBASIC0.09□□□□□ -2.4
SDC3O75056 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC0.09□□□□□ -2.4
SDC3O75056 AC244669.1-204ENST00000621564 178 ntBASIC0.09□□□□□ -2.4
SDC3O75056 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.08□□□□□ -2.4
SDC3O75056 SNORD114-10-201ENST00000363409 72 ntBASIC0.08□□□□□ -2.4
SDC3O75056 Y_RNA.178-201ENST00000363832 102 ntBASIC0.08□□□□□ -2.4
SDC3O75056 Y_RNA.307-201ENST00000365022 117 ntBASIC0.08□□□□□ -2.4
SDC3O75056 RNU6-47P-201ENST00000383866 107 ntBASIC0.08□□□□□ -2.4
SDC3O75056 Y_RNA.452-201ENST00000384202 108 ntBASIC0.08□□□□□ -2.4
SDC3O75056 RNU7-129P-201ENST00000516128 62 ntBASIC0.08□□□□□ -2.4
SDC3O75056 RNU2-35P-201ENST00000516446 142 ntBASIC0.08□□□□□ -2.4
SDC3O75056 AC138749.4-201ENST00000563970 127 ntBASIC0.08□□□□□ -2.4
SDC3O75056 MIR548AE2-201ENST00000583456 67 ntBASIC0.08□□□□□ -2.4
SDC3O75056 MIR4719-201ENST00000585233 84 ntBASIC0.08□□□□□ -2.4
SDC3O75056 TUG1_4.1-201ENST00000619464 181 ntBASIC0.08□□□□□ -2.4
SDC3O75056 Y_RNA.56-201ENST00000362798 112 ntBASIC0.07□□□□□ -2.4
SDC3O75056 Y_RNA.497-201ENST00000384447 98 ntBASIC0.07□□□□□ -2.4
SDC3O75056 PCNPP3-201ENST00000393579 471 ntBASIC0.07□□□□□ -2.4
SDC3O75056 SNORD67.1-201ENST00000516618 108 ntBASIC0.07□□□□□ -2.4
SDC3O75056 MIR4752-201ENST00000579672 72 ntBASIC0.07□□□□□ -2.4
SDC3O75056 AL359881.1-201ENST00000602916 267 ntBASIC0.07□□□□□ -2.4
SDC3O75056 AC105081.1-201ENST00000617727 106 ntBASIC0.07□□□□□ -2.4
SDC3O75056 SNORA9.1-201ENST00000362412 131 ntBASIC0.06□□□□□ -2.4
SDC3O75056 Y_RNA.233-201ENST00000364407 101 ntBASIC0.06□□□□□ -2.4
SDC3O75056 RNU6-196P-201ENST00000384315 107 ntBASIC0.06□□□□□ -2.4
SDC3O75056 AC244505.6-201ENST00000452829 130 ntBASIC0.06□□□□□ -2.4
SDC3O75056 RNU6-240P-201ENST00000516098 97 ntBASIC0.06□□□□□ -2.4
SDC3O75056 RNU6-1219P-201ENST00000516143 112 ntBASIC0.06□□□□□ -2.4
SDC3O75056 MIR6844-201ENST00000637122 62 ntBASIC0.06□□□□□ -2.4
SDC3O75056 MIR101-2-201ENST00000362195 79 ntBASIC0.05□□□□□ -2.4
SDC3O75056 Y_RNA.119-201ENST00000363301 96 ntBASIC0.05□□□□□ -2.4
SDC3O75056 RNY1P2-201ENST00000364820 117 ntBASIC0.05□□□□□ -2.4
SDC3O75056 RNU6-574P-201ENST00000384265 107 ntBASIC0.05□□□□□ -2.4
SDC3O75056 Y_RNA.793-201ENST00000411222 111 ntBASIC0.05□□□□□ -2.4
SDC3O75056 RNA5SP285-201ENST00000516619 119 ntBASIC0.05□□□□□ -2.4
SDC3O75056 RNU2-60P-201ENST00000517290 128 ntBASIC0.05□□□□□ -2.4
SDC3O75056 IGHVII-40-1-201ENST00000517316 58 ntBASIC0.05□□□□□ -2.4
SDC3O75056 AC022559.1-201ENST00000520905 205 ntBASIC0.05□□□□□ -2.4
SDC3O75056 AC138907.4-201ENST00000570107 226 ntBASIC0.05□□□□□ -2.4
SDC3O75056 Y_RNA.299-201ENST00000364973 94 ntBASIC0.04□□□□□ -2.4
SDC3O75056 MIR760-201ENST00000390220 80 ntBASIC0.04□□□□□ -2.4
SDC3O75056 RNU6-239P-201ENST00000390990 99 ntBASIC0.04□□□□□ -2.4
SDC3O75056 AC108059.2-201ENST00000434626 151 ntBASIC0.04□□□□□ -2.4
SDC3O75056 RNU7-121P-201ENST00000516604 62 ntBASIC0.04□□□□□ -2.4
SDC3O75056 AC021443.1-201ENST00000604478 211 ntBASIC0.04□□□□□ -2.4
SDC3O75056 Y_RNA.49-201ENST00000362714 112 ntBASIC0.03□□□□□ -2.4
SDC3O75056 RNU6-508P-201ENST00000363231 103 ntBASIC0.03□□□□□ -2.4
SDC3O75056 SNORD114-9-201ENST00000364370 72 ntBASIC0.03□□□□□ -2.4
SDC3O75056 Y_RNA.362-201ENST00000365518 110 ntBASIC0.03□□□□□ -2.4
SDC3O75056 RNU6-429P-201ENST00000384582 108 ntBASIC0.03□□□□□ -2.4
SDC3O75056 MIR643-201ENST00000385267 97 ntBASIC0.03□□□□□ -2.4
SDC3O75056 MIR1270-201ENST00000459320 83 ntBASIC0.03□□□□□ -2.4
SDC3O75056 AC130289.1-201ENST00000577321 73 ntBASIC0.03□□□□□ -2.4
SDC3O75056 MIR4768-201ENST00000585270 74 ntBASIC0.03□□□□□ -2.4
SDC3O75056 AC104408.1-201ENST00000605241 170 ntBASIC0.03□□□□□ -2.4
SDC3O75056 SNORD114-5-201ENST00000362928 70 ntBASIC0.02□□□□□ -2.41
SDC3O75056 RNA5SP214-201ENST00000363378 118 ntBASIC0.02□□□□□ -2.41
SDC3O75056 SNORD115-24-201ENST00000363528 82 ntBASIC0.02□□□□□ -2.41
SDC3O75056 RNY1P11-201ENST00000363759 113 ntBASIC0.02□□□□□ -2.41
SDC3O75056 RNU6-463P-201ENST00000384340 107 ntBASIC0.02□□□□□ -2.41
SDC3O75056 RNU6-588P-201ENST00000410281 105 ntBASIC0.02□□□□□ -2.41
SDC3O75056 RNU4-69P-201ENST00000410677 143 ntBASIC0.02□□□□□ -2.41
SDC3O75056 RNU7-164P-201ENST00000459221 62 ntBASIC0.02□□□□□ -2.41
SDC3O75056 RNU6-1232P-201ENST00000516299 86 ntBASIC0.02□□□□□ -2.41
SDC3O75056 AC138869.1-201ENST00000568623 124 ntBASIC0.02□□□□□ -2.41
SDC3O75056 MIR4667-201ENST00000578933 66 ntBASIC0.02□□□□□ -2.41
SDC3O75056 MIR548H5-201ENST00000580314 60 ntBASIC0.02□□□□□ -2.41
SDC3O75056 AC072026.1-201ENST00000605023 201 ntBASIC0.02□□□□□ -2.41
SDC3O75056 MIR3658-201ENST00000636291 56 ntBASIC0.02□□□□□ -2.41
SDC3O75056 RNU4-84P-201ENST00000364200 139 ntBASIC0.01□□□□□ -2.41
SDC3O75056 RNU6-1318P-201ENST00000365389 103 ntBASIC0.01□□□□□ -2.41
SDC3O75056 Y_RNA.433-201ENST00000384089 102 ntBASIC0.01□□□□□ -2.41
SDC3O75056 RNU6-127P-201ENST00000390897 107 ntBASIC0.01□□□□□ -2.41
SDC3O75056 RNU7-123P-201ENST00000515911 60 ntBASIC0.01□□□□□ -2.41
SDC3O75056 RNU7-10P-201ENST00000607194 63 ntBASIC0.01□□□□□ -2.41
SDC3O75056 RNU6-726P-201ENST00000364680 107 ntBASIC0□□□□□ -2.41
SDC3O75056 MIR548L-201ENST00000408303 86 ntBASIC0□□□□□ -2.41
SDC3O75056 Y_RNA.651-201ENST00000459380 103 ntBASIC0□□□□□ -2.41
SDC3O75056 RNU7-104P-201ENST00000459398 79 ntBASIC0□□□□□ -2.41
SDC3O75056 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC0□□□□□ -2.41
SDC3O75056 RNU1-29P-201ENST00000606574 126 ntBASIC0□□□□□ -2.41
SDC3O75056 MIR499B-201ENST00000636498 73 ntBASIC0□□□□□ -2.41
SDC3O75056 Y_RNA.274-201ENST00000364714 101 ntBASIC-0.01□□□□□ -2.41
SDC3O75056 Y_RNA.298-201ENST00000364960 107 ntBASIC-0.01□□□□□ -2.41
SDC3O75056 RNA5SP128-201ENST00000365305 116 ntBASIC-0.01□□□□□ -2.41
SDC3O75056 SNORD18B-201ENST00000365659 72 ntBASIC-0.01□□□□□ -2.41
SDC3O75056 SNORA2A-201ENST00000383885 135 ntBASIC-0.01□□□□□ -2.41
SDC3O75056 Y_RNA.489-201ENST00000384410 101 ntBASIC-0.01□□□□□ -2.41
SDC3O75056 RNU6-1321P-201ENST00000390905 107 ntBASIC-0.01□□□□□ -2.41
SDC3O75056 AL603914.1-201ENST00000401964 204 ntBASIC-0.01□□□□□ -2.41
SDC3O75056 Y_RNA.644-201ENST00000459006 113 ntBASIC-0.01□□□□□ -2.41
SDC3O75056 Y_RNA.674-201ENST00000516362 113 ntBASIC-0.01□□□□□ -2.41
SDC3O75056 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC-0.01□□□□□ -2.41
SDC3O75056 DNAJC19P2-201ENST00000593340 302 ntBASIC-0.01□□□□□ -2.41
SDC3O75056 MIR371B-201ENST00000638082 66 ntBASIC-0.01□□□□□ -2.41
SDC3O75056 MIR6759-201ENST00000638110 65 ntBASIC-0.01□□□□□ -2.41
SDC3O75056 SNORD114-16-201ENST00000363044 70 ntBASIC-0.02□□□□□ -2.41
SDC3O75056 Y_RNA.448-201ENST00000384185 108 ntBASIC-0.02□□□□□ -2.41
SDC3O75056 MIR329-2-201ENST00000385029 84 ntBASIC-0.02□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 198 ms