Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 MIR18B-201ENST00000454574 71 ntBASIC0.78□□□□□ -2.28
LIMA1Q9UHB6 RNU6-772P-201ENST00000516042 105 ntBASIC0.78□□□□□ -2.28
LIMA1Q9UHB6 AC011195.1-201ENST00000578177 177 ntBASIC0.78□□□□□ -2.28
LIMA1Q9UHB6 MIR8070-201ENST00000616510 88 ntBASIC0.78□□□□□ -2.28
LIMA1Q9UHB6 RNU6-81P-201ENST00000365608 104 ntBASIC0.77□□□□□ -2.29
LIMA1Q9UHB6 MIR539-201ENST00000365690 78 ntBASIC0.77□□□□□ -2.29
LIMA1Q9UHB6 RNU6-949P-201ENST00000384040 107 ntBASIC0.77□□□□□ -2.29
LIMA1Q9UHB6 MIR520F-201ENST00000384824 87 ntBASIC0.77□□□□□ -2.29
LIMA1Q9UHB6 U8.15-201ENST00000390947 134 ntBASIC0.77□□□□□ -2.29
LIMA1Q9UHB6 MIR1263-201ENST00000408324 86 ntBASIC0.77□□□□□ -2.29
LIMA1Q9UHB6 MIR1276-201ENST00000408707 83 ntBASIC0.77□□□□□ -2.29
LIMA1Q9UHB6 RNA5SP237-201ENST00000410414 113 ntBASIC0.77□□□□□ -2.29
LIMA1Q9UHB6 RNU6-1086P-201ENST00000410930 100 ntBASIC0.77□□□□□ -2.29
LIMA1Q9UHB6 AC244098.3-201ENST00000424803 96 ntBASIC0.77□□□□□ -2.29
LIMA1Q9UHB6 MIR3910-1-201ENST00000580936 111 ntBASIC0.77□□□□□ -2.29
LIMA1Q9UHB6 MIR4804-201ENST00000581683 73 ntBASIC0.77□□□□□ -2.29
LIMA1Q9UHB6 MIR4676-201ENST00000583078 72 ntBASIC0.77□□□□□ -2.29
LIMA1Q9UHB6 SNORA4-201ENST00000584302 138 ntBASIC0.77□□□□□ -2.29
LIMA1Q9UHB6 AL359881.1-201ENST00000602916 267 ntBASIC0.77□□□□□ -2.29
LIMA1Q9UHB6 Y_RNA.71-201ENST00000362892 104 ntBASIC0.76□□□□□ -2.29
LIMA1Q9UHB6 RNU6-110P-201ENST00000384508 104 ntBASIC0.76□□□□□ -2.29
LIMA1Q9UHB6 MIR520H-201ENST00000385126 88 ntBASIC0.76□□□□□ -2.29
LIMA1Q9UHB6 RNU1-119P-201ENST00000391122 165 ntBASIC0.76□□□□□ -2.29
LIMA1Q9UHB6 MIR1287-201ENST00000408492 90 ntBASIC0.76□□□□□ -2.29
LIMA1Q9UHB6 AC004941.2-201ENST00000427009 228 ntBASIC0.76□□□□□ -2.29
LIMA1Q9UHB6 TMSB4XP3-201ENST00000445144 114 ntBASIC0.76□□□□□ -2.29
LIMA1Q9UHB6 RNU7-185P-201ENST00000459215 60 ntBASIC0.76□□□□□ -2.29
LIMA1Q9UHB6 RNU7-79P-201ENST00000516082 62 ntBASIC0.76□□□□□ -2.29
LIMA1Q9UHB6 IGHVII-40-1-201ENST00000517316 58 ntBASIC0.76□□□□□ -2.29
LIMA1Q9UHB6 RNU6-80P-201ENST00000384195 107 ntBASIC0.75□□□□□ -2.29
LIMA1Q9UHB6 RNU6-959P-201ENST00000384671 107 ntBASIC0.75□□□□□ -2.29
LIMA1Q9UHB6 MIR499A-201ENST00000384903 122 ntBASIC0.75□□□□□ -2.29
LIMA1Q9UHB6 RNU4-69P-201ENST00000410677 143 ntBASIC0.75□□□□□ -2.29
LIMA1Q9UHB6 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.75□□□□□ -2.29
LIMA1Q9UHB6 RNU6-659P-201ENST00000516454 104 ntBASIC0.75□□□□□ -2.29
LIMA1Q9UHB6 MIR6504-201ENST00000613520 61 ntBASIC0.75□□□□□ -2.29
LIMA1Q9UHB6 RNU1-93P-201ENST00000364704 169 ntBASIC0.74□□□□□ -2.29
LIMA1Q9UHB6 Y_RNA.528-201ENST00000384575 108 ntBASIC0.74□□□□□ -2.29
LIMA1Q9UHB6 Y_RNA.588-201ENST00000391254 102 ntBASIC0.74□□□□□ -2.29
LIMA1Q9UHB6 MIR1257-201ENST00000408490 117 ntBASIC0.74□□□□□ -2.29
LIMA1Q9UHB6 RNA5SP136-201ENST00000410906 107 ntBASIC0.74□□□□□ -2.29
LIMA1Q9UHB6 COX6CP6-201ENST00000490840 228 ntBASIC0.74□□□□□ -2.29
LIMA1Q9UHB6 RNU6-1061P-201ENST00000516530 99 ntBASIC0.74□□□□□ -2.29
LIMA1Q9UHB6 SNORD67.1-201ENST00000516618 108 ntBASIC0.74□□□□□ -2.29
LIMA1Q9UHB6 RNU7-137P-201ENST00000516788 62 ntBASIC0.74□□□□□ -2.29
LIMA1Q9UHB6 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC0.74□□□□□ -2.29
LIMA1Q9UHB6 AC087741.2-201ENST00000619415 172 ntBASIC0.74□□□□□ -2.29
LIMA1Q9UHB6 Y_RNA.191-201ENST00000363972 113 ntBASIC0.73□□□□□ -2.29
LIMA1Q9UHB6 Y_RNA.198-201ENST00000364013 98 ntBASIC0.73□□□□□ -2.29
LIMA1Q9UHB6 Y_RNA.226-201ENST00000364337 114 ntBASIC0.73□□□□□ -2.29
LIMA1Q9UHB6 Y_RNA.299-201ENST00000364973 94 ntBASIC0.73□□□□□ -2.29
LIMA1Q9UHB6 SNORD116-14-201ENST00000383894 92 ntBASIC0.73□□□□□ -2.29
LIMA1Q9UHB6 SNORD116-17-201ENST00000383929 92 ntBASIC0.73□□□□□ -2.29
LIMA1Q9UHB6 SNORD116-15-201ENST00000384445 92 ntBASIC0.73□□□□□ -2.29
LIMA1Q9UHB6 SNORD116-19-201ENST00000384729 92 ntBASIC0.73□□□□□ -2.29
LIMA1Q9UHB6 MIR573-201ENST00000384964 99 ntBASIC0.73□□□□□ -2.29
LIMA1Q9UHB6 MIR125B2-201ENST00000385128 89 ntBASIC0.73□□□□□ -2.29
LIMA1Q9UHB6 RNU6-1307P-201ENST00000391012 103 ntBASIC0.73□□□□□ -2.29
LIMA1Q9UHB6 AL606490.4-201ENST00000423117 127 ntBASIC0.73□□□□□ -2.29
LIMA1Q9UHB6 Y_RNA.712-201ENST00000517011 92 ntBASIC0.73□□□□□ -2.29
LIMA1Q9UHB6 AC008608.1-201ENST00000603910 127 ntBASIC0.73□□□□□ -2.29
LIMA1Q9UHB6 AC025166.1-201ENST00000612411 163 ntBASIC0.73□□□□□ -2.29
LIMA1Q9UHB6 MIR3914-2-201ENST00000637339 95 ntBASIC0.73□□□□□ -2.29
LIMA1Q9UHB6 AL589743.1-201ENST00000551932 2712 ntBASIC0.73□□□□□ -2.29
LIMA1Q9UHB6 Y_RNA.224-201ENST00000364308 111 ntBASIC0.72□□□□□ -2.29
LIMA1Q9UHB6 SNORD114-22-201ENST00000365423 72 ntBASIC0.72□□□□□ -2.29
LIMA1Q9UHB6 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.72□□□□□ -2.29
LIMA1Q9UHB6 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC0.72□□□□□ -2.29
LIMA1Q9UHB6 MIR938-201ENST00000401216 83 ntBASIC0.72□□□□□ -2.29
LIMA1Q9UHB6 RNU7-56P-201ENST00000458744 62 ntBASIC0.72□□□□□ -2.29
LIMA1Q9UHB6 AL078603.1-201ENST00000603824 313 ntBASIC0.72□□□□□ -2.29
LIMA1Q9UHB6 Y_RNA.773-201ENST00000607168 90 ntBASIC0.72□□□□□ -2.29
LIMA1Q9UHB6 MIR8066-201ENST00000617280 78 ntBASIC0.72□□□□□ -2.29
LIMA1Q9UHB6 MTND5P18-201ENST00000445624 1801 ntBASIC0.72□□□□□ -2.29
LIMA1Q9UHB6 Y_RNA.42-201ENST00000362660 108 ntBASIC0.71□□□□□ -2.3
LIMA1Q9UHB6 Y_RNA.127-201ENST00000363386 109 ntBASIC0.71□□□□□ -2.3
LIMA1Q9UHB6 SNORD113-1-201ENST00000365321 69 ntBASIC0.71□□□□□ -2.3
LIMA1Q9UHB6 RNA5SP222-201ENST00000411039 105 ntBASIC0.71□□□□□ -2.3
LIMA1Q9UHB6 MIR4491-201ENST00000581087 68 ntBASIC0.71□□□□□ -2.3
LIMA1Q9UHB6 MIR4452-201ENST00000583004 71 ntBASIC0.71□□□□□ -2.3
LIMA1Q9UHB6 SNORD92-201ENST00000585078 85 ntBASIC0.71□□□□□ -2.3
LIMA1Q9UHB6 AL157777.2-201ENST00000258070 137 ntBASIC0.7□□□□□ -2.3
LIMA1Q9UHB6 SNORD115-19-201ENST00000363098 82 ntBASIC0.7□□□□□ -2.3
LIMA1Q9UHB6 SNORD115-18-201ENST00000363293 82 ntBASIC0.7□□□□□ -2.3
LIMA1Q9UHB6 SNORD115-17-201ENST00000364612 82 ntBASIC0.7□□□□□ -2.3
LIMA1Q9UHB6 Y_RNA.261-201ENST00000364631 102 ntBASIC0.7□□□□□ -2.3
LIMA1Q9UHB6 RNU6-616P-201ENST00000384353 107 ntBASIC0.7□□□□□ -2.3
LIMA1Q9UHB6 MIR520E-201ENST00000384867 87 ntBASIC0.7□□□□□ -2.3
LIMA1Q9UHB6 MIR206-201ENST00000384872 86 ntBASIC0.7□□□□□ -2.3
LIMA1Q9UHB6 SNORD93-201ENST00000408813 74 ntBASIC0.7□□□□□ -2.3
LIMA1Q9UHB6 RNU7-102P-201ENST00000458948 62 ntBASIC0.7□□□□□ -2.3
LIMA1Q9UHB6 RNU6-1333P-201ENST00000516162 93 ntBASIC0.7□□□□□ -2.3
LIMA1Q9UHB6 SNORD33.1-201ENST00000516213 88 ntBASIC0.7□□□□□ -2.3
LIMA1Q9UHB6 RNU7-6P-201ENST00000516845 62 ntBASIC0.7□□□□□ -2.3
LIMA1Q9UHB6 MIR3163-201ENST00000581592 73 ntBASIC0.7□□□□□ -2.3
LIMA1Q9UHB6 AL365222.1-201ENST00000614661 98 ntBASIC0.7□□□□□ -2.3
LIMA1Q9UHB6 AC105081.1-201ENST00000617727 106 ntBASIC0.7□□□□□ -2.3
LIMA1Q9UHB6 MIR6835-201ENST00000621552 64 ntBASIC0.7□□□□□ -2.3
LIMA1Q9UHB6 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.69□□□□□ -2.3
LIMA1Q9UHB6 Y_RNA.118-201ENST00000363300 101 ntBASIC0.69□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 174.2 ms