Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 AL359821.1-201ENST00000605519 182 ntBASIC0.89□□□□□ -2.27
CCDC28AQ8IWP9 MIR8066-201ENST00000617280 78 ntBASIC0.89□□□□□ -2.27
CCDC28AQ8IWP9 MTND5P18-201ENST00000445624 1801 ntBASIC0.89□□□□□ -2.27
CCDC28AQ8IWP9 AL157777.2-201ENST00000258070 137 ntBASIC0.88□□□□□ -2.27
CCDC28AQ8IWP9 Y_RNA.42-201ENST00000362660 108 ntBASIC0.88□□□□□ -2.27
CCDC28AQ8IWP9 Y_RNA.71-201ENST00000362892 104 ntBASIC0.88□□□□□ -2.27
CCDC28AQ8IWP9 Y_RNA.218-201ENST00000364218 104 ntBASIC0.88□□□□□ -2.27
CCDC28AQ8IWP9 SNORA72.6-201ENST00000384520 129 ntBASIC0.88□□□□□ -2.27
CCDC28AQ8IWP9 MIR573-201ENST00000384964 99 ntBASIC0.88□□□□□ -2.27
CCDC28AQ8IWP9 MT-TI-201ENST00000387365 69 ntBASIC0.88□□□□□ -2.27
CCDC28AQ8IWP9 AC108667.1-201ENST00000428618 249 ntBASIC0.88□□□□□ -2.27
CCDC28AQ8IWP9 RNU7-95P-201ENST00000459222 64 ntBASIC0.88□□□□□ -2.27
CCDC28AQ8IWP9 RNU6-765P-201ENST00000516916 99 ntBASIC0.88□□□□□ -2.27
CCDC28AQ8IWP9 AC090897.1-201ENST00000580909 226 ntBASIC0.88□□□□□ -2.27
CCDC28AQ8IWP9 AC211469.2-201ENST00000605461 205 ntBASIC0.88□□□□□ -2.27
CCDC28AQ8IWP9 MIR6082-201ENST00000613604 109 ntBASIC0.88□□□□□ -2.27
CCDC28AQ8IWP9 Y_RNA.13-201ENST00000362403 112 ntBASIC0.87□□□□□ -2.27
CCDC28AQ8IWP9 SNORD115-19-201ENST00000363098 82 ntBASIC0.87□□□□□ -2.27
CCDC28AQ8IWP9 SNORD115-18-201ENST00000363293 82 ntBASIC0.87□□□□□ -2.27
CCDC28AQ8IWP9 RNA5SP99-201ENST00000364020 114 ntBASIC0.87□□□□□ -2.27
CCDC28AQ8IWP9 SNORD115-17-201ENST00000364612 82 ntBASIC0.87□□□□□ -2.27
CCDC28AQ8IWP9 RNU6-81P-201ENST00000365608 104 ntBASIC0.87□□□□□ -2.27
CCDC28AQ8IWP9 Y_RNA.712-201ENST00000517011 92 ntBASIC0.87□□□□□ -2.27
CCDC28AQ8IWP9 AP003327.1-201ENST00000529684 127 ntBASIC0.87□□□□□ -2.27
CCDC28AQ8IWP9 AC011195.1-201ENST00000578177 177 ntBASIC0.87□□□□□ -2.27
CCDC28AQ8IWP9 AC008608.1-201ENST00000603910 127 ntBASIC0.87□□□□□ -2.27
CCDC28AQ8IWP9 AC087741.2-201ENST00000619415 172 ntBASIC0.87□□□□□ -2.27
CCDC28AQ8IWP9 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC0.87□□□□□ -2.27
CCDC28AQ8IWP9 SNORD116-14-201ENST00000383894 92 ntBASIC0.86□□□□□ -2.27
CCDC28AQ8IWP9 SNORD116-17-201ENST00000383929 92 ntBASIC0.86□□□□□ -2.27
CCDC28AQ8IWP9 RNU6-616P-201ENST00000384353 107 ntBASIC0.86□□□□□ -2.27
CCDC28AQ8IWP9 SNORD116-15-201ENST00000384445 92 ntBASIC0.86□□□□□ -2.27
CCDC28AQ8IWP9 RNU6-959P-201ENST00000384671 107 ntBASIC0.86□□□□□ -2.27
CCDC28AQ8IWP9 SNORD116-19-201ENST00000384729 92 ntBASIC0.86□□□□□ -2.27
CCDC28AQ8IWP9 MIR206-201ENST00000384872 86 ntBASIC0.86□□□□□ -2.27
CCDC28AQ8IWP9 AC244098.3-201ENST00000424803 96 ntBASIC0.86□□□□□ -2.27
CCDC28AQ8IWP9 AC105081.1-201ENST00000617727 106 ntBASIC0.86□□□□□ -2.27
CCDC28AQ8IWP9 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.85□□□□□ -2.27
CCDC28AQ8IWP9 RNA5SP133-201ENST00000363368 119 ntBASIC0.85□□□□□ -2.27
CCDC28AQ8IWP9 RNY4P6-201ENST00000363667 96 ntBASIC0.85□□□□□ -2.27
CCDC28AQ8IWP9 MIR548D2-201ENST00000384955 97 ntBASIC0.85□□□□□ -2.27
CCDC28AQ8IWP9 MIR605-201ENST00000385078 83 ntBASIC0.85□□□□□ -2.27
CCDC28AQ8IWP9 Y_RNA.630-201ENST00000411370 108 ntBASIC0.85□□□□□ -2.27
CCDC28AQ8IWP9 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC0.85□□□□□ -2.27
CCDC28AQ8IWP9 RNU7-2P-201ENST00000516096 62 ntBASIC0.85□□□□□ -2.27
CCDC28AQ8IWP9 RNU6-659P-201ENST00000516454 104 ntBASIC0.85□□□□□ -2.27
CCDC28AQ8IWP9 RNU6-448P-201ENST00000517052 107 ntBASIC0.85□□□□□ -2.27
CCDC28AQ8IWP9 DEFB131E-201ENST00000532329 154 ntBASIC0.85□□□□□ -2.27
CCDC28AQ8IWP9 MIR4298-201ENST00000584380 73 ntBASIC0.85□□□□□ -2.27
CCDC28AQ8IWP9 U6.109-201ENST00000636749 87 ntBASIC0.85□□□□□ -2.27
CCDC28AQ8IWP9 MIR3914-2-201ENST00000637339 95 ntBASIC0.85□□□□□ -2.27
CCDC28AQ8IWP9 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.84□□□□□ -2.27
CCDC28AQ8IWP9 RNU4-58P-201ENST00000363192 141 ntBASIC0.84□□□□□ -2.27
CCDC28AQ8IWP9 RNY1P2-201ENST00000364820 117 ntBASIC0.84□□□□□ -2.27
CCDC28AQ8IWP9 Y_RNA.448-201ENST00000384185 108 ntBASIC0.84□□□□□ -2.27
CCDC28AQ8IWP9 MIR146A-201ENST00000385201 99 ntBASIC0.84□□□□□ -2.27
CCDC28AQ8IWP9 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC0.84□□□□□ -2.27
CCDC28AQ8IWP9 SNORA17.3-201ENST00000391159 129 ntBASIC0.84□□□□□ -2.27
CCDC28AQ8IWP9 RNU6-735P-201ENST00000410612 107 ntBASIC0.84□□□□□ -2.27
CCDC28AQ8IWP9 PSMC1P5-201ENST00000512850 177 ntBASIC0.84□□□□□ -2.27
CCDC28AQ8IWP9 RNA5SP458-201ENST00000516188 119 ntBASIC0.84□□□□□ -2.27
CCDC28AQ8IWP9 RNU6-1194P-201ENST00000516208 104 ntBASIC0.84□□□□□ -2.27
CCDC28AQ8IWP9 SNORA25.16-201ENST00000516741 121 ntBASIC0.84□□□□□ -2.27
CCDC28AQ8IWP9 AC013244.2-201ENST00000603396 103 ntBASIC0.84□□□□□ -2.27
CCDC28AQ8IWP9 Y_RNA.127-201ENST00000363386 109 ntBASIC0.83□□□□□ -2.28
CCDC28AQ8IWP9 SNORD115-35-201ENST00000365122 82 ntBASIC0.83□□□□□ -2.28
CCDC28AQ8IWP9 Y_RNA.525-201ENST00000384570 113 ntBASIC0.83□□□□□ -2.28
CCDC28AQ8IWP9 RNU6-1321P-201ENST00000390905 107 ntBASIC0.83□□□□□ -2.28
CCDC28AQ8IWP9 AP1B1P2-201ENST00000416196 106 ntBASIC0.83□□□□□ -2.28
CCDC28AQ8IWP9 RNU7-48P-201ENST00000458875 63 ntBASIC0.83□□□□□ -2.28
CCDC28AQ8IWP9 AC087343.1-201ENST00000477341 475 ntBASIC0.83□□□□□ -2.28
CCDC28AQ8IWP9 AC138749.4-201ENST00000563970 127 ntBASIC0.83□□□□□ -2.28
CCDC28AQ8IWP9 MIR3910-1-201ENST00000580936 111 ntBASIC0.83□□□□□ -2.28
CCDC28AQ8IWP9 U6.95-201ENST00000636931 70 ntBASIC0.83□□□□□ -2.28
CCDC28AQ8IWP9 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.83□□□□□ -2.28
CCDC28AQ8IWP9 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.82□□□□□ -2.28
CCDC28AQ8IWP9 Y_RNA.98-201ENST00000363109 102 ntBASIC0.82□□□□□ -2.28
CCDC28AQ8IWP9 RNU4-45P-201ENST00000365469 141 ntBASIC0.82□□□□□ -2.28
CCDC28AQ8IWP9 RNU6-110P-201ENST00000384508 104 ntBASIC0.82□□□□□ -2.28
CCDC28AQ8IWP9 SNORD100-201ENST00000408573 76 ntBASIC0.82□□□□□ -2.28
CCDC28AQ8IWP9 AC008267.6-201ENST00000441664 139 ntBASIC0.82□□□□□ -2.28
CCDC28AQ8IWP9 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.82□□□□□ -2.28
CCDC28AQ8IWP9 MIR3612-201ENST00000579753 87 ntBASIC0.82□□□□□ -2.28
CCDC28AQ8IWP9 AC132825.6-201ENST00000638861 357 ntBASIC0.82□□□□□ -2.28
CCDC28AQ8IWP9 RNU6-865P-201ENST00000364772 107 ntBASIC0.81□□□□□ -2.28
CCDC28AQ8IWP9 AC002350.1-201ENST00000490759 375 ntBASIC0.81□□□□□ -2.28
CCDC28AQ8IWP9 RNU6-1333P-201ENST00000516162 93 ntBASIC0.81□□□□□ -2.28
CCDC28AQ8IWP9 RNU6-531P-201ENST00000516694 104 ntBASIC0.81□□□□□ -2.28
CCDC28AQ8IWP9 Y_RNA.773-201ENST00000607168 90 ntBASIC0.81□□□□□ -2.28
CCDC28AQ8IWP9 UGP2-230ENST00000626380 276 ntTSL 5 BASIC0.81□□□□□ -2.28
CCDC28AQ8IWP9 Y_RNA.119-201ENST00000363301 96 ntBASIC0.8□□□□□ -2.28
CCDC28AQ8IWP9 RNU6ATAC41P-201ENST00000408600 126 ntBASIC0.8□□□□□ -2.28
CCDC28AQ8IWP9 RNA5SP222-201ENST00000411039 105 ntBASIC0.8□□□□□ -2.28
CCDC28AQ8IWP9 Y_RNA.697-201ENST00000516776 113 ntBASIC0.8□□□□□ -2.28
CCDC28AQ8IWP9 AP001362.1-201ENST00000625165 124 ntBASIC0.8□□□□□ -2.28
CCDC28AQ8IWP9 Y_RNA.328-201ENST00000365208 113 ntBASIC0.79□□□□□ -2.28
CCDC28AQ8IWP9 RNA5SP117-201ENST00000365294 118 ntBASIC0.79□□□□□ -2.28
CCDC28AQ8IWP9 SNORD114-21-201ENST00000606412 72 ntBASIC0.79□□□□□ -2.28
CCDC28AQ8IWP9 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.79□□□□□ -2.28
CCDC28AQ8IWP9 Y_RNA.327-201ENST00000365201 102 ntBASIC0.78□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 259.8 ms