Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 U8.15-201ENST00000390947 134 ntBASIC0.85□□□□□ -2.27
SYNE3Q6ZMZ3 SNORD99-201ENST00000408612 74 ntBASIC0.85□□□□□ -2.27
SYNE3Q6ZMZ3 MIR1270-201ENST00000459320 83 ntBASIC0.85□□□□□ -2.27
SYNE3Q6ZMZ3 RNA5SP33-201ENST00000516687 98 ntBASIC0.85□□□□□ -2.27
SYNE3Q6ZMZ3 IGKV1-22-201ENST00000524313 326 ntBASIC0.85□□□□□ -2.27
SYNE3Q6ZMZ3 CYP3A137P-201ENST00000562436 69 ntBASIC0.85□□□□□ -2.27
SYNE3Q6ZMZ3 MIR548AE2-201ENST00000583456 67 ntBASIC0.85□□□□□ -2.27
SYNE3Q6ZMZ3 Y_RNA.114-201ENST00000363265 113 ntBASIC0.84□□□□□ -2.27
SYNE3Q6ZMZ3 RNU6-1237P-201ENST00000384777 107 ntBASIC0.84□□□□□ -2.27
SYNE3Q6ZMZ3 Y_RNA.588-201ENST00000391254 102 ntBASIC0.84□□□□□ -2.27
SYNE3Q6ZMZ3 Y_RNA.617-201ENST00000410920 90 ntBASIC0.84□□□□□ -2.27
SYNE3Q6ZMZ3 RNU7-79P-201ENST00000516082 62 ntBASIC0.84□□□□□ -2.27
SYNE3Q6ZMZ3 RNY4P20-201ENST00000516678 93 ntBASIC0.84□□□□□ -2.27
SYNE3Q6ZMZ3 MIR8066-201ENST00000617280 78 ntBASIC0.84□□□□□ -2.27
SYNE3Q6ZMZ3 MIR6515-201ENST00000619843 57 ntBASIC0.84□□□□□ -2.27
SYNE3Q6ZMZ3 SNORD50.2-201ENST00000365465 70 ntBASIC0.83□□□□□ -2.28
SYNE3Q6ZMZ3 MIR605-201ENST00000385078 83 ntBASIC0.83□□□□□ -2.28
SYNE3Q6ZMZ3 MIR520H-201ENST00000385126 88 ntBASIC0.83□□□□□ -2.28
SYNE3Q6ZMZ3 MTND4LP9-201ENST00000427694 174 ntBASIC0.83□□□□□ -2.28
SYNE3Q6ZMZ3 ACA64.5-201ENST00000516207 127 ntBASIC0.83□□□□□ -2.28
SYNE3Q6ZMZ3 AC090897.1-201ENST00000580909 226 ntBASIC0.83□□□□□ -2.28
SYNE3Q6ZMZ3 AC022709.1-201ENST00000615967 87 ntBASIC0.83□□□□□ -2.28
SYNE3Q6ZMZ3 Y_RNA.343-201ENST00000365354 112 ntBASIC0.82□□□□□ -2.28
SYNE3Q6ZMZ3 RNU6-110P-201ENST00000384508 104 ntBASIC0.82□□□□□ -2.28
SYNE3Q6ZMZ3 MIR613-201ENST00000385248 95 ntBASIC0.82□□□□□ -2.28
SYNE3Q6ZMZ3 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.82□□□□□ -2.28
SYNE3Q6ZMZ3 RNU4-69P-201ENST00000410677 143 ntBASIC0.82□□□□□ -2.28
SYNE3Q6ZMZ3 AL606490.4-201ENST00000423117 127 ntBASIC0.82□□□□□ -2.28
SYNE3Q6ZMZ3 AL158147.1-201ENST00000443970 75 ntBASIC0.82□□□□□ -2.28
SYNE3Q6ZMZ3 RNU7-102P-201ENST00000458948 62 ntBASIC0.82□□□□□ -2.28
SYNE3Q6ZMZ3 PSMC1P5-201ENST00000512850 177 ntBASIC0.82□□□□□ -2.28
SYNE3Q6ZMZ3 RNU6-765P-201ENST00000516916 99 ntBASIC0.82□□□□□ -2.28
SYNE3Q6ZMZ3 AP003327.1-201ENST00000529684 127 ntBASIC0.82□□□□□ -2.28
SYNE3Q6ZMZ3 AL590095.2-201ENST00000604136 117 ntBASIC0.82□□□□□ -2.28
SYNE3Q6ZMZ3 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.81□□□□□ -2.28
SYNE3Q6ZMZ3 RNU1-119P-201ENST00000391122 165 ntBASIC0.81□□□□□ -2.28
SYNE3Q6ZMZ3 SNORD100-201ENST00000408573 76 ntBASIC0.81□□□□□ -2.28
SYNE3Q6ZMZ3 RNU7-137P-201ENST00000516788 62 ntBASIC0.81□□□□□ -2.28
SYNE3Q6ZMZ3 Y_RNA.703-201ENST00000516846 111 ntBASIC0.81□□□□□ -2.28
SYNE3Q6ZMZ3 RNU7-156P-201ENST00000517214 74 ntBASIC0.81□□□□□ -2.28
SYNE3Q6ZMZ3 AC008608.1-201ENST00000603910 127 ntBASIC0.81□□□□□ -2.28
SYNE3Q6ZMZ3 TUG1_4.1-201ENST00000619464 181 ntBASIC0.81□□□□□ -2.28
SYNE3Q6ZMZ3 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC0.81□□□□□ -2.28
SYNE3Q6ZMZ3 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.81□□□□□ -2.28
SYNE3Q6ZMZ3 MIRLET7F2-201ENST00000385277 83 ntBASIC0.8□□□□□ -2.28
SYNE3Q6ZMZ3 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.8□□□□□ -2.28
SYNE3Q6ZMZ3 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC0.8□□□□□ -2.28
SYNE3Q6ZMZ3 SNORD93-201ENST00000408813 74 ntBASIC0.8□□□□□ -2.28
SYNE3Q6ZMZ3 RNU6-257P-201ENST00000410238 98 ntBASIC0.8□□□□□ -2.28
SYNE3Q6ZMZ3 RN7SKP19-201ENST00000516016 252 ntBASIC0.8□□□□□ -2.28
SYNE3Q6ZMZ3 RNU6-346P-201ENST00000516288 111 ntBASIC0.8□□□□□ -2.28
SYNE3Q6ZMZ3 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.8□□□□□ -2.28
SYNE3Q6ZMZ3 AC133485.1-201ENST00000567176 124 ntBASIC0.8□□□□□ -2.28
SYNE3Q6ZMZ3 AC138907.6-201ENST00000568401 126 ntBASIC0.8□□□□□ -2.28
SYNE3Q6ZMZ3 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.8□□□□□ -2.28
SYNE3Q6ZMZ3 SNORD114-10-201ENST00000363409 72 ntBASIC0.79□□□□□ -2.28
SYNE3Q6ZMZ3 RNU4-45P-201ENST00000365469 141 ntBASIC0.79□□□□□ -2.28
SYNE3Q6ZMZ3 RNU6-746P-201ENST00000384112 109 ntBASIC0.79□□□□□ -2.28
SYNE3Q6ZMZ3 RNU6-364P-201ENST00000384387 107 ntBASIC0.79□□□□□ -2.28
SYNE3Q6ZMZ3 SNORA40-201ENST00000388090 126 ntBASIC0.79□□□□□ -2.28
SYNE3Q6ZMZ3 RNU6-447P-201ENST00000410293 104 ntBASIC0.79□□□□□ -2.28
SYNE3Q6ZMZ3 RNU6-1118P-201ENST00000410382 104 ntBASIC0.79□□□□□ -2.28
SYNE3Q6ZMZ3 RNU6-1076P-201ENST00000410397 104 ntBASIC0.79□□□□□ -2.28
SYNE3Q6ZMZ3 RNU6-355P-201ENST00000410427 104 ntBASIC0.79□□□□□ -2.28
SYNE3Q6ZMZ3 RNU6-791P-201ENST00000410467 104 ntBASIC0.79□□□□□ -2.28
SYNE3Q6ZMZ3 RNU6-705P-201ENST00000410601 104 ntBASIC0.79□□□□□ -2.28
SYNE3Q6ZMZ3 RNU6-1100P-201ENST00000410691 104 ntBASIC0.79□□□□□ -2.28
SYNE3Q6ZMZ3 RNU6-860P-201ENST00000410860 104 ntBASIC0.79□□□□□ -2.28
SYNE3Q6ZMZ3 RNU4-83P-201ENST00000410863 133 ntBASIC0.79□□□□□ -2.28
SYNE3Q6ZMZ3 RNA5SP136-201ENST00000410906 107 ntBASIC0.79□□□□□ -2.28
SYNE3Q6ZMZ3 RNU6-1217P-201ENST00000411276 104 ntBASIC0.79□□□□□ -2.28
SYNE3Q6ZMZ3 RNU6-785P-201ENST00000411324 104 ntBASIC0.79□□□□□ -2.28
SYNE3Q6ZMZ3 RNU6-1194P-201ENST00000516208 104 ntBASIC0.79□□□□□ -2.28
SYNE3Q6ZMZ3 AC022523.2-201ENST00000561045 150 ntBASIC0.79□□□□□ -2.28
SYNE3Q6ZMZ3 MIR5000-201ENST00000577717 103 ntBASIC0.79□□□□□ -2.28
SYNE3Q6ZMZ3 MIR4491-201ENST00000581087 68 ntBASIC0.79□□□□□ -2.28
SYNE3Q6ZMZ3 AL359881.1-201ENST00000602916 267 ntBASIC0.79□□□□□ -2.28
SYNE3Q6ZMZ3 U6.90-201ENST00000614007 104 ntBASIC0.79□□□□□ -2.28
SYNE3Q6ZMZ3 U6.70-201ENST00000620287 104 ntBASIC0.79□□□□□ -2.28
SYNE3Q6ZMZ3 Y_RNA.294-201ENST00000364916 102 ntBASIC0.78□□□□□ -2.28
SYNE3Q6ZMZ3 SNORA32-201ENST00000384072 121 ntBASIC0.78□□□□□ -2.28
SYNE3Q6ZMZ3 RNU6-1104P-201ENST00000384723 104 ntBASIC0.78□□□□□ -2.28
SYNE3Q6ZMZ3 MIR508-201ENST00000384857 115 ntBASIC0.78□□□□□ -2.28
SYNE3Q6ZMZ3 RNA5SP272-201ENST00000516095 111 ntBASIC0.78□□□□□ -2.28
SYNE3Q6ZMZ3 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC0.78□□□□□ -2.28
SYNE3Q6ZMZ3 MIR6082-201ENST00000613604 109 ntBASIC0.78□□□□□ -2.28
SYNE3Q6ZMZ3 Y_RNA.586-201ENST00000391146 98 ntBASIC0.77□□□□□ -2.29
SYNE3Q6ZMZ3 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.77□□□□□ -2.29
SYNE3Q6ZMZ3 RPL39P25-201ENST00000449384 154 ntBASIC0.77□□□□□ -2.29
SYNE3Q6ZMZ3 COX6CP6-201ENST00000490840 228 ntBASIC0.77□□□□□ -2.29
SYNE3Q6ZMZ3 SNORD67.1-201ENST00000516618 108 ntBASIC0.77□□□□□ -2.29
SYNE3Q6ZMZ3 AC011195.1-201ENST00000578177 177 ntBASIC0.77□□□□□ -2.29
SYNE3Q6ZMZ3 MIR598-201ENST00000384868 97 ntBASIC0.76□□□□□ -2.29
SYNE3Q6ZMZ3 RNU5E-3P-201ENST00000515913 68 ntBASIC0.76□□□□□ -2.29
SYNE3Q6ZMZ3 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.76□□□□□ -2.29
SYNE3Q6ZMZ3 Y_RNA.13-201ENST00000362403 112 ntBASIC0.75□□□□□ -2.29
SYNE3Q6ZMZ3 SNORD115-19-201ENST00000363098 82 ntBASIC0.75□□□□□ -2.29
SYNE3Q6ZMZ3 SNORD115-18-201ENST00000363293 82 ntBASIC0.75□□□□□ -2.29
SYNE3Q6ZMZ3 Y_RNA.198-201ENST00000364013 98 ntBASIC0.75□□□□□ -2.29
SYNE3Q6ZMZ3 SNORD115-17-201ENST00000364612 82 ntBASIC0.75□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 334 ms