Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 ACA64.5-201ENST00000516207 127 ntBASIC1.26□□□□□ -2.21
SF3A1Q15459 SNORA72.6-201ENST00000384520 129 ntBASIC1.25□□□□□ -2.21
SF3A1Q15459 RNU6-447P-201ENST00000410293 104 ntBASIC1.25□□□□□ -2.21
SF3A1Q15459 RNU6-1118P-201ENST00000410382 104 ntBASIC1.25□□□□□ -2.21
SF3A1Q15459 RNU6-1076P-201ENST00000410397 104 ntBASIC1.25□□□□□ -2.21
SF3A1Q15459 RNU6-355P-201ENST00000410427 104 ntBASIC1.25□□□□□ -2.21
SF3A1Q15459 RNU6-791P-201ENST00000410467 104 ntBASIC1.25□□□□□ -2.21
SF3A1Q15459 RNU6-705P-201ENST00000410601 104 ntBASIC1.25□□□□□ -2.21
SF3A1Q15459 RNU6-1100P-201ENST00000410691 104 ntBASIC1.25□□□□□ -2.21
SF3A1Q15459 RNU6-860P-201ENST00000410860 104 ntBASIC1.25□□□□□ -2.21
SF3A1Q15459 RNU6-1217P-201ENST00000411276 104 ntBASIC1.25□□□□□ -2.21
SF3A1Q15459 RNU6-785P-201ENST00000411324 104 ntBASIC1.25□□□□□ -2.21
SF3A1Q15459 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.25□□□□□ -2.21
SF3A1Q15459 U6.90-201ENST00000614007 104 ntBASIC1.25□□□□□ -2.21
SF3A1Q15459 U6.70-201ENST00000620287 104 ntBASIC1.25□□□□□ -2.21
SF3A1Q15459 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
SF3A1Q15459 Y_RNA.213-201ENST00000364178 111 ntBASIC1.24□□□□□ -2.21
SF3A1Q15459 RNU6-1104P-201ENST00000384723 104 ntBASIC1.24□□□□□ -2.21
SF3A1Q15459 RNA5SP136-201ENST00000410906 107 ntBASIC1.24□□□□□ -2.21
SF3A1Q15459 RNU7-102P-201ENST00000458948 62 ntBASIC1.24□□□□□ -2.21
SF3A1Q15459 RNU6-781P-201ENST00000516377 101 ntBASIC1.24□□□□□ -2.21
SF3A1Q15459 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC1.24□□□□□ -2.21
SF3A1Q15459 SNORD114-27-201ENST00000363766 70 ntBASIC1.23□□□□□ -2.21
SF3A1Q15459 RNU1-93P-201ENST00000364704 169 ntBASIC1.23□□□□□ -2.21
SF3A1Q15459 SNORD67.1-201ENST00000516618 108 ntBASIC1.23□□□□□ -2.21
SF3A1Q15459 AC011195.1-201ENST00000578177 177 ntBASIC1.23□□□□□ -2.21
SF3A1Q15459 AL353765.1-201ENST00000605514 183 ntBASIC1.23□□□□□ -2.21
SF3A1Q15459 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.23□□□□□ -2.21
SF3A1Q15459 SNORA22-201ENST00000383907 134 ntBASIC1.22□□□□□ -2.21
SF3A1Q15459 Y_RNA.528-201ENST00000384575 108 ntBASIC1.22□□□□□ -2.21
SF3A1Q15459 SNORA22C-201ENST00000384614 134 ntBASIC1.22□□□□□ -2.21
SF3A1Q15459 MIR520E-201ENST00000384867 87 ntBASIC1.22□□□□□ -2.21
SF3A1Q15459 MIR7-2-201ENST00000384970 110 ntBASIC1.22□□□□□ -2.21
SF3A1Q15459 Y_RNA.617-201ENST00000410920 90 ntBASIC1.22□□□□□ -2.21
SF3A1Q15459 TMSB4XP3-201ENST00000445144 114 ntBASIC1.22□□□□□ -2.21
SF3A1Q15459 SNORD114-21-201ENST00000606412 72 ntBASIC1.22□□□□□ -2.21
SF3A1Q15459 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.21□□□□□ -2.22
SF3A1Q15459 MIR608-201ENST00000384820 100 ntBASIC1.21□□□□□ -2.22
SF3A1Q15459 MIR605-201ENST00000385078 83 ntBASIC1.21□□□□□ -2.22
SF3A1Q15459 RNU7-56P-201ENST00000458744 62 ntBASIC1.21□□□□□ -2.22
SF3A1Q15459 RNU7-6P-201ENST00000516845 62 ntBASIC1.21□□□□□ -2.22
SF3A1Q15459 MIR3163-201ENST00000581592 73 ntBASIC1.21□□□□□ -2.22
SF3A1Q15459 SNORD58C-201ENST00000365223 64 ntBASIC1.2□□□□□ -2.22
SF3A1Q15459 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
SF3A1Q15459 RPS29P1-201ENST00000465274 159 ntBASIC1.2□□□□□ -2.22
SF3A1Q15459 RNU7-137P-201ENST00000516788 62 ntBASIC1.2□□□□□ -2.22
SF3A1Q15459 AC133485.1-201ENST00000567176 124 ntBASIC1.2□□□□□ -2.22
SF3A1Q15459 SNORD92-201ENST00000585078 85 ntBASIC1.2□□□□□ -2.22
SF3A1Q15459 MIR4295-201ENST00000585286 85 ntBASIC1.2□□□□□ -2.22
SF3A1Q15459 FAM71BP1-201ENST00000604431 523 ntBASIC1.2□□□□□ -2.22
SF3A1Q15459 MIR6515-201ENST00000619843 57 ntBASIC1.2□□□□□ -2.22
SF3A1Q15459 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC1.19□□□□□ -2.22
SF3A1Q15459 RNU6-1187P-201ENST00000364771 110 ntBASIC1.19□□□□□ -2.22
SF3A1Q15459 COX6CP6-201ENST00000490840 228 ntBASIC1.19□□□□□ -2.22
SF3A1Q15459 RNU6-772P-201ENST00000516042 105 ntBASIC1.19□□□□□ -2.22
SF3A1Q15459 DEFB131E-201ENST00000532329 154 ntBASIC1.19□□□□□ -2.22
SF3A1Q15459 MIR4491-201ENST00000581087 68 ntBASIC1.19□□□□□ -2.22
SF3A1Q15459 AC025166.1-201ENST00000612411 163 ntBASIC1.19□□□□□ -2.22
SF3A1Q15459 AC022709.1-201ENST00000615967 87 ntBASIC1.19□□□□□ -2.22
SF3A1Q15459 AC105081.1-201ENST00000617727 106 ntBASIC1.19□□□□□ -2.22
SF3A1Q15459 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.19□□□□□ -2.22
SF3A1Q15459 Y_RNA.198-201ENST00000364013 98 ntBASIC1.18□□□□□ -2.22
SF3A1Q15459 RNU6-81P-201ENST00000365608 104 ntBASIC1.18□□□□□ -2.22
SF3A1Q15459 MIR1270-201ENST00000459320 83 ntBASIC1.18□□□□□ -2.22
SF3A1Q15459 AC087343.1-201ENST00000477341 475 ntBASIC1.18□□□□□ -2.22
SF3A1Q15459 RNA5SP480-201ENST00000516840 109 ntBASIC1.18□□□□□ -2.22
SF3A1Q15459 AL359881.1-201ENST00000602916 267 ntBASIC1.18□□□□□ -2.22
SF3A1Q15459 AC008608.1-201ENST00000603910 127 ntBASIC1.18□□□□□ -2.22
SF3A1Q15459 AC211469.2-201ENST00000605461 205 ntBASIC1.18□□□□□ -2.22
SF3A1Q15459 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.18□□□□□ -2.22
SF3A1Q15459 Y_RNA.13-201ENST00000362403 112 ntBASIC1.17□□□□□ -2.22
SF3A1Q15459 SNORD114-10-201ENST00000363409 72 ntBASIC1.17□□□□□ -2.22
SF3A1Q15459 Y_RNA.540-201ENST00000384638 111 ntBASIC1.17□□□□□ -2.22
SF3A1Q15459 MIR573-201ENST00000384964 99 ntBASIC1.17□□□□□ -2.22
SF3A1Q15459 PSMC1P5-201ENST00000512850 177 ntBASIC1.17□□□□□ -2.22
SF3A1Q15459 RNU6-1223P-201ENST00000517124 104 ntBASIC1.17□□□□□ -2.22
SF3A1Q15459 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC1.17□□□□□ -2.22
SF3A1Q15459 MIR3910-1-201ENST00000580936 111 ntBASIC1.17□□□□□ -2.22
SF3A1Q15459 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC1.17□□□□□ -2.22
SF3A1Q15459 RNU6-80P-201ENST00000384195 107 ntBASIC1.16□□□□□ -2.22
SF3A1Q15459 Y_RNA.588-201ENST00000391254 102 ntBASIC1.16□□□□□ -2.22
SF3A1Q15459 RNU7-107P-201ENST00000459121 61 ntBASIC1.16□□□□□ -2.22
SF3A1Q15459 RNU6-1234P-201ENST00000516877 103 ntBASIC1.16□□□□□ -2.22
SF3A1Q15459 RNU6-789P-201ENST00000517105 102 ntBASIC1.16□□□□□ -2.22
SF3A1Q15459 MIR6788-201ENST00000618842 66 ntBASIC1.16□□□□□ -2.22
SF3A1Q15459 U6.109-201ENST00000636749 87 ntBASIC1.16□□□□□ -2.22
SF3A1Q15459 AC132825.6-201ENST00000638861 357 ntBASIC1.16□□□□□ -2.22
SF3A1Q15459 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.15□□□□□ -2.22
SF3A1Q15459 RNA5SP133-201ENST00000363368 119 ntBASIC1.15□□□□□ -2.23
SF3A1Q15459 RNU6-959P-201ENST00000384671 107 ntBASIC1.15□□□□□ -2.23
SF3A1Q15459 RNA5SP222-201ENST00000411039 105 ntBASIC1.15□□□□□ -2.23
SF3A1Q15459 AC096949.1-201ENST00000412047 152 ntBASIC1.15□□□□□ -2.23
SF3A1Q15459 MIR151B-201ENST00000584249 96 ntBASIC1.15□□□□□ -2.23
SF3A1Q15459 MIR6082-201ENST00000613604 109 ntBASIC1.15□□□□□ -2.23
SF3A1Q15459 MIR8066-201ENST00000617280 78 ntBASIC1.15□□□□□ -2.23
SF3A1Q15459 AL157777.2-201ENST00000258070 137 ntBASIC1.14□□□□□ -2.23
SF3A1Q15459 RNU4-38P-201ENST00000364472 129 ntBASIC1.14□□□□□ -2.23
SF3A1Q15459 RNU6-616P-201ENST00000384353 107 ntBASIC1.14□□□□□ -2.23
SF3A1Q15459 MT-TI-201ENST00000387365 69 ntBASIC1.14□□□□□ -2.23
SF3A1Q15459 MIR548J-201ENST00000408833 112 ntBASIC1.14□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 218.8 ms