Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 RNU6-519P-201ENST00000410590 108 ntBASIC2.12□□□□□ -2.07
SOX4Q06945 RPS27P21-201ENST00000486977 252 ntBASIC2.12□□□□□ -2.07
SOX4Q06945 AC138749.4-201ENST00000563970 127 ntBASIC2.12□□□□□ -2.07
SOX4Q06945 MIR4500-201ENST00000579472 76 ntBASIC2.12□□□□□ -2.07
SOX4Q06945 AL096861.1-201ENST00000610899 123 ntBASIC2.12□□□□□ -2.07
SOX4Q06945 MIR6845-201ENST00000613182 61 ntBASIC2.12□□□□□ -2.07
SOX4Q06945 MIR8066-201ENST00000617280 78 ntBASIC2.12□□□□□ -2.07
SOX4Q06945 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.12□□□□□ -2.07
SOX4Q06945 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.12□□□□□ -2.07
SOX4Q06945 RNA5SP133-201ENST00000363368 119 ntBASIC2.11□□□□□ -2.07
SOX4Q06945 RNU6-396P-201ENST00000365369 105 ntBASIC2.11□□□□□ -2.07
SOX4Q06945 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC2.11□□□□□ -2.07
SOX4Q06945 snoU13.23-201ENST00000458863 104 ntBASIC2.11□□□□□ -2.07
SOX4Q06945 MIR4524B-201ENST00000581569 115 ntBASIC2.11□□□□□ -2.07
SOX4Q06945 AL357312.1-201ENST00000603879 298 ntBASIC2.11□□□□□ -2.07
SOX4Q06945 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
SOX4Q06945 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.1□□□□□ -2.07
SOX4Q06945 SNORA25.3-201ENST00000363205 127 ntBASIC2.1□□□□□ -2.07
SOX4Q06945 SNORD115-37-201ENST00000363768 82 ntBASIC2.1□□□□□ -2.07
SOX4Q06945 RNU6-776P-201ENST00000364403 104 ntBASIC2.1□□□□□ -2.07
SOX4Q06945 RNU6-1022P-201ENST00000365049 104 ntBASIC2.1□□□□□ -2.07
SOX4Q06945 MIR17-201ENST00000385012 84 ntBASIC2.1□□□□□ -2.07
SOX4Q06945 MIR563-201ENST00000385080 79 ntBASIC2.1□□□□□ -2.07
SOX4Q06945 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC2.1□□□□□ -2.07
SOX4Q06945 AC003989.2-201ENST00000440224 169 ntBASIC2.1□□□□□ -2.07
SOX4Q06945 AC087499.7-201ENST00000441958 109 ntBASIC2.1□□□□□ -2.07
SOX4Q06945 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC2.1□□□□□ -2.07
SOX4Q06945 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
SOX4Q06945 RNU4-83P-201ENST00000410863 133 ntBASIC2.09□□□□□ -2.07
SOX4Q06945 SNRPGP12-201ENST00000449481 213 ntBASIC2.09□□□□□ -2.07
SOX4Q06945 RNU6-295P-201ENST00000516901 104 ntBASIC2.09□□□□□ -2.07
SOX4Q06945 AC015712.3-201ENST00000559380 164 ntBASIC2.09□□□□□ -2.07
SOX4Q06945 MIR4287-201ENST00000579398 78 ntBASIC2.09□□□□□ -2.07
SOX4Q06945 SNORA4-201ENST00000584302 138 ntBASIC2.09□□□□□ -2.07
SOX4Q06945 MIR6740-201ENST00000618268 113 ntBASIC2.09□□□□□ -2.07
SOX4Q06945 U6.109-201ENST00000636749 87 ntBASIC2.09□□□□□ -2.07
SOX4Q06945 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.09□□□□□ -2.08
SOX4Q06945 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.08□□□□□ -2.08
SOX4Q06945 Y_RNA.57-201ENST00000362806 113 ntBASIC2.08□□□□□ -2.08
SOX4Q06945 SNORA16B-201ENST00000364674 135 ntBASIC2.08□□□□□ -2.08
SOX4Q06945 HSPE1P24-201ENST00000450782 238 ntBASIC2.08□□□□□ -2.08
SOX4Q06945 HMGN2P23-201ENST00000456759 269 ntBASIC2.08□□□□□ -2.08
SOX4Q06945 AC025033.1-201ENST00000463883 194 ntBASIC2.08□□□□□ -2.08
SOX4Q06945 RNU6-850P-201ENST00000516934 103 ntBASIC2.08□□□□□ -2.08
SOX4Q06945 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC2.08□□□□□ -2.08
SOX4Q06945 AC140658.3-201ENST00000567603 271 ntBASIC2.08□□□□□ -2.08
SOX4Q06945 MIR4769-201ENST00000584126 77 ntBASIC2.08□□□□□ -2.08
SOX4Q06945 GHRLOS.1-201ENST00000610995 70 ntBASIC2.08□□□□□ -2.08
SOX4Q06945 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.07□□□□□ -2.08
SOX4Q06945 MIR30D-201ENST00000362283 70 ntBASIC2.07□□□□□ -2.08
SOX4Q06945 Y_RNA.119-201ENST00000363301 96 ntBASIC2.07□□□□□ -2.08
SOX4Q06945 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC2.07□□□□□ -2.08
SOX4Q06945 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC2.07□□□□□ -2.08
SOX4Q06945 SNORA40.18-201ENST00000391200 128 ntBASIC2.07□□□□□ -2.08
SOX4Q06945 HMGN2P38-201ENST00000423806 265 ntBASIC2.07□□□□□ -2.08
SOX4Q06945 SNORD4B-201ENST00000459083 72 ntBASIC2.07□□□□□ -2.08
SOX4Q06945 RNU7-153P-201ENST00000516455 62 ntBASIC2.07□□□□□ -2.08
SOX4Q06945 AC015688.6-201ENST00000577737 104 ntBASIC2.07□□□□□ -2.08
SOX4Q06945 SNORA77B-201ENST00000578179 125 ntBASIC2.07□□□□□ -2.08
SOX4Q06945 MIR4264-201ENST00000583520 66 ntBASIC2.07□□□□□ -2.08
SOX4Q06945 MIR4712-201ENST00000583750 82 ntBASIC2.07□□□□□ -2.08
SOX4Q06945 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC2.07□□□□□ -2.08
SOX4Q06945 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC2.07□□□□□ -2.08
SOX4Q06945 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
SOX4Q06945 RNU6-205P-201ENST00000390858 107 ntBASIC2.06□□□□□ -2.08
SOX4Q06945 MIR1236-201ENST00000408340 102 ntBASIC2.06□□□□□ -2.08
SOX4Q06945 RNU6-1165P-201ENST00000410119 107 ntBASIC2.06□□□□□ -2.08
SOX4Q06945 AC090255.1-201ENST00000495779 349 ntBASIC2.06□□□□□ -2.08
SOX4Q06945 RNU6-947P-201ENST00000516264 106 ntBASIC2.06□□□□□ -2.08
SOX4Q06945 AL773524.1-201ENST00000614065 229 ntBASIC2.06□□□□□ -2.08
SOX4Q06945 RNU4-32P-201ENST00000363404 141 ntBASIC2.05□□□□□ -2.08
SOX4Q06945 MIR583-201ENST00000384846 75 ntBASIC2.05□□□□□ -2.08
SOX4Q06945 SNORA26.9-201ENST00000391322 122 ntBASIC2.05□□□□□ -2.08
SOX4Q06945 BX276092.1-201ENST00000427368 251 ntBASIC2.05□□□□□ -2.08
SOX4Q06945 snoU13.25-201ENST00000458945 104 ntBASIC2.05□□□□□ -2.08
SOX4Q06945 RNU6-717P-201ENST00000459076 104 ntBASIC2.05□□□□□ -2.08
SOX4Q06945 RPL23AP42-201ENST00000471152 471 ntBASIC2.05□□□□□ -2.08
SOX4Q06945 RN7SL274P-201ENST00000492268 272 ntBASIC2.05□□□□□ -2.08
SOX4Q06945 AC108210.2-201ENST00000503681 201 ntBASIC2.05□□□□□ -2.08
SOX4Q06945 RNU6-65P-201ENST00000516332 98 ntBASIC2.05□□□□□ -2.08
SOX4Q06945 MIR2115-201ENST00000516657 100 ntBASIC2.05□□□□□ -2.08
SOX4Q06945 MIR514B-201ENST00000516774 80 ntBASIC2.05□□□□□ -2.08
SOX4Q06945 RNU6-250P-201ENST00000516958 103 ntBASIC2.05□□□□□ -2.08
SOX4Q06945 AP000553.5-201ENST00000641933 54 ntBASIC2.05□□□□□ -2.08
SOX4Q06945 RNU6-571P-201ENST00000384128 107 ntBASIC2.04□□□□□ -2.08
SOX4Q06945 RNU4-52P-201ENST00000384209 138 ntBASIC2.04□□□□□ -2.08
SOX4Q06945 MIR9-3-201ENST00000385084 90 ntBASIC2.04□□□□□ -2.08
SOX4Q06945 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC2.04□□□□□ -2.08
SOX4Q06945 5S_rRNA.2-201ENST00000391293 112 ntBASIC2.04□□□□□ -2.08
SOX4Q06945 RNA5SP338-201ENST00000410495 85 ntBASIC2.04□□□□□ -2.08
SOX4Q06945 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.04□□□□□ -2.08
SOX4Q06945 RNU7-62P-201ENST00000458856 62 ntBASIC2.04□□□□□ -2.08
SOX4Q06945 RNA5SP182-201ENST00000516064 82 ntBASIC2.04□□□□□ -2.08
SOX4Q06945 AL512598.1-201ENST00000610158 273 ntBASIC2.04□□□□□ -2.08
SOX4Q06945 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC2.04□□□□□ -2.08
SOX4Q06945 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC2.03□□□□□ -2.08
SOX4Q06945 RNA5SP99-201ENST00000364020 114 ntBASIC2.03□□□□□ -2.08
SOX4Q06945 MT-TN-201ENST00000387400 73 ntBASIC2.03□□□□□ -2.08
SOX4Q06945 RNA5SP233-201ENST00000459153 113 ntBASIC2.03□□□□□ -2.08
SOX4Q06945 AL133373.1-201ENST00000497098 94 ntBASIC2.03□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 170.7 ms