Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 Y_RNA.299-201ENST00000364973 94 ntBASIC0.79□□□□□ -2.28
SHMT1P34896 Y_RNA.366-201ENST00000365540 102 ntBASIC0.79□□□□□ -2.28
SHMT1P34896 RNU6-949P-201ENST00000384040 107 ntBASIC0.79□□□□□ -2.28
SHMT1P34896 RNU1-119P-201ENST00000391122 165 ntBASIC0.79□□□□□ -2.28
SHMT1P34896 SNORD93-201ENST00000408813 74 ntBASIC0.79□□□□□ -2.28
SHMT1P34896 RNU6-447P-201ENST00000410293 104 ntBASIC0.79□□□□□ -2.28
SHMT1P34896 RNU6-1118P-201ENST00000410382 104 ntBASIC0.79□□□□□ -2.28
SHMT1P34896 RNU6-1076P-201ENST00000410397 104 ntBASIC0.79□□□□□ -2.28
SHMT1P34896 RNU6-355P-201ENST00000410427 104 ntBASIC0.79□□□□□ -2.28
SHMT1P34896 RNU6-791P-201ENST00000410467 104 ntBASIC0.79□□□□□ -2.28
SHMT1P34896 RNU6-705P-201ENST00000410601 104 ntBASIC0.79□□□□□ -2.28
SHMT1P34896 RNU6-1100P-201ENST00000410691 104 ntBASIC0.79□□□□□ -2.28
SHMT1P34896 RNU6-860P-201ENST00000410860 104 ntBASIC0.79□□□□□ -2.28
SHMT1P34896 RNU6-1217P-201ENST00000411276 104 ntBASIC0.79□□□□□ -2.28
SHMT1P34896 RNU6-785P-201ENST00000411324 104 ntBASIC0.79□□□□□ -2.28
SHMT1P34896 RNU7-56P-201ENST00000458744 62 ntBASIC0.79□□□□□ -2.28
SHMT1P34896 RNU7-79P-201ENST00000516082 62 ntBASIC0.79□□□□□ -2.28
SHMT1P34896 RNA5SP480-201ENST00000516840 109 ntBASIC0.79□□□□□ -2.28
SHMT1P34896 RNU7-35P-201ENST00000517174 62 ntBASIC0.79□□□□□ -2.28
SHMT1P34896 U6.90-201ENST00000614007 104 ntBASIC0.79□□□□□ -2.28
SHMT1P34896 U6.70-201ENST00000620287 104 ntBASIC0.79□□□□□ -2.28
SHMT1P34896 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.79□□□□□ -2.28
SHMT1P34896 HSBP1P2-201ENST00000299671 229 ntBASIC0.78□□□□□ -2.28
SHMT1P34896 Y_RNA.298-201ENST00000364960 107 ntBASIC0.78□□□□□ -2.28
SHMT1P34896 Y_RNA.343-201ENST00000365354 112 ntBASIC0.78□□□□□ -2.28
SHMT1P34896 RNY1P5-201ENST00000383890 115 ntBASIC0.78□□□□□ -2.28
SHMT1P34896 MIR520H-201ENST00000385126 88 ntBASIC0.78□□□□□ -2.28
SHMT1P34896 RNU6-255P-201ENST00000516957 105 ntBASIC0.78□□□□□ -2.28
SHMT1P34896 RNU7-156P-201ENST00000517214 74 ntBASIC0.78□□□□□ -2.28
SHMT1P34896 SNORD114-26-201ENST00000363543 72 ntBASIC0.77□□□□□ -2.29
SHMT1P34896 RNY1P13-201ENST00000365030 105 ntBASIC0.77□□□□□ -2.29
SHMT1P34896 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.77□□□□□ -2.29
SHMT1P34896 U8.15-201ENST00000390947 134 ntBASIC0.77□□□□□ -2.29
SHMT1P34896 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.77□□□□□ -2.29
SHMT1P34896 RNU7-123P-201ENST00000515911 60 ntBASIC0.77□□□□□ -2.29
SHMT1P34896 SNORD92-201ENST00000585078 85 ntBASIC0.77□□□□□ -2.29
SHMT1P34896 AC108081.1-201ENST00000604358 221 ntBASIC0.77□□□□□ -2.29
SHMT1P34896 U7.2-201ENST00000607576 63 ntBASIC0.77□□□□□ -2.29
SHMT1P34896 MIR6513-201ENST00000621188 64 ntBASIC0.77□□□□□ -2.29
SHMT1P34896 Y_RNA.36-201ENST00000362602 112 ntBASIC0.76□□□□□ -2.29
SHMT1P34896 RNU6-647P-201ENST00000364243 107 ntBASIC0.76□□□□□ -2.29
SHMT1P34896 PSMC1P5-201ENST00000512850 177 ntBASIC0.76□□□□□ -2.29
SHMT1P34896 AC011195.1-201ENST00000578177 177 ntBASIC0.76□□□□□ -2.29
SHMT1P34896 AL590095.2-201ENST00000604136 117 ntBASIC0.76□□□□□ -2.29
SHMT1P34896 Y_RNA.114-201ENST00000363265 113 ntBASIC0.75□□□□□ -2.29
SHMT1P34896 SNORA32-201ENST00000384072 121 ntBASIC0.75□□□□□ -2.29
SHMT1P34896 RNU6-110P-201ENST00000384508 104 ntBASIC0.75□□□□□ -2.29
SHMT1P34896 MIR7-2-201ENST00000384970 110 ntBASIC0.75□□□□□ -2.29
SHMT1P34896 RNU4-69P-201ENST00000410677 143 ntBASIC0.75□□□□□ -2.29
SHMT1P34896 RNU4-83P-201ENST00000410863 133 ntBASIC0.75□□□□□ -2.29
SHMT1P34896 RNU6-426P-201ENST00000516464 97 ntBASIC0.75□□□□□ -2.29
SHMT1P34896 MIR548AE2-201ENST00000583456 67 ntBASIC0.75□□□□□ -2.29
SHMT1P34896 TUG1_4.1-201ENST00000619464 181 ntBASIC0.75□□□□□ -2.29
SHMT1P34896 RNA5SP499-201ENST00000363982 119 ntBASIC0.74□□□□□ -2.29
SHMT1P34896 Y_RNA.506-201ENST00000384494 102 ntBASIC0.74□□□□□ -2.29
SHMT1P34896 MIR573-201ENST00000384964 99 ntBASIC0.74□□□□□ -2.29
SHMT1P34896 MIR605-201ENST00000385078 83 ntBASIC0.74□□□□□ -2.29
SHMT1P34896 AC244098.3-201ENST00000424803 96 ntBASIC0.74□□□□□ -2.29
SHMT1P34896 RNU7-102P-201ENST00000458948 62 ntBASIC0.74□□□□□ -2.29
SHMT1P34896 RNY4P20-201ENST00000516678 93 ntBASIC0.74□□□□□ -2.29
SHMT1P34896 MT-TR-201ENST00000387439 65 ntBASIC0.73□□□□□ -2.29
SHMT1P34896 AC090897.1-201ENST00000580909 226 ntBASIC0.73□□□□□ -2.29
SHMT1P34896 AL589743.1-201ENST00000551932 2712 ntBASIC0.73□□□□□ -2.29
SHMT1P34896 RNU6-403P-201ENST00000363163 104 ntBASIC0.72□□□□□ -2.29
SHMT1P34896 Y_RNA.568-201ENST00000384742 113 ntBASIC0.72□□□□□ -2.29
SHMT1P34896 SNORA40-201ENST00000388090 126 ntBASIC0.72□□□□□ -2.29
SHMT1P34896 MIR936-201ENST00000401264 98 ntBASIC0.72□□□□□ -2.29
SHMT1P34896 AL606490.4-201ENST00000423117 127 ntBASIC0.72□□□□□ -2.29
SHMT1P34896 RN7SKP19-201ENST00000516016 252 ntBASIC0.72□□□□□ -2.29
SHMT1P34896 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.72□□□□□ -2.29
SHMT1P34896 MIR4491-201ENST00000581087 68 ntBASIC0.72□□□□□ -2.29
SHMT1P34896 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.71□□□□□ -2.3
SHMT1P34896 SNORD114-10-201ENST00000363409 72 ntBASIC0.71□□□□□ -2.3
SHMT1P34896 Y_RNA.280-201ENST00000364765 112 ntBASIC0.71□□□□□ -2.3
SHMT1P34896 RNU4-45P-201ENST00000365469 141 ntBASIC0.71□□□□□ -2.3
SHMT1P34896 SNORD77B-201ENST00000391112 67 ntBASIC0.71□□□□□ -2.3
SHMT1P34896 RNA5SP193-201ENST00000410353 107 ntBASIC0.71□□□□□ -2.3
SHMT1P34896 AL158147.1-201ENST00000443970 75 ntBASIC0.71□□□□□ -2.3
SHMT1P34896 RNA5SP272-201ENST00000516095 111 ntBASIC0.71□□□□□ -2.3
SHMT1P34896 RNU6-346P-201ENST00000516288 111 ntBASIC0.71□□□□□ -2.3
SHMT1P34896 AC008608.1-201ENST00000603910 127 ntBASIC0.71□□□□□ -2.3
SHMT1P34896 Y_RNA.42-201ENST00000362660 108 ntBASIC0.7□□□□□ -2.3
SHMT1P34896 Y_RNA.294-201ENST00000364916 102 ntBASIC0.7□□□□□ -2.3
SHMT1P34896 RNU6-1062P-201ENST00000383908 107 ntBASIC0.7□□□□□ -2.3
SHMT1P34896 Y_RNA.588-201ENST00000391254 102 ntBASIC0.7□□□□□ -2.3
SHMT1P34896 RNA5SP136-201ENST00000410906 107 ntBASIC0.7□□□□□ -2.3
SHMT1P34896 RNA5SP222-201ENST00000411039 105 ntBASIC0.7□□□□□ -2.3
SHMT1P34896 AC096949.1-201ENST00000412047 152 ntBASIC0.7□□□□□ -2.3
SHMT1P34896 MTND4LP9-201ENST00000427694 174 ntBASIC0.7□□□□□ -2.3
SHMT1P34896 RNU6-448P-201ENST00000517052 107 ntBASIC0.7□□□□□ -2.3
SHMT1P34896 MIR6082-201ENST00000613604 109 ntBASIC0.7□□□□□ -2.3
SHMT1P34896 MIR8066-201ENST00000617280 78 ntBASIC0.7□□□□□ -2.3
SHMT1P34896 Y_RNA.13-201ENST00000362403 112 ntBASIC0.69□□□□□ -2.3
SHMT1P34896 MIR759-201ENST00000390224 91 ntBASIC0.69□□□□□ -2.3
SHMT1P34896 SNORD100-201ENST00000408573 76 ntBASIC0.69□□□□□ -2.3
SHMT1P34896 AC098934.3-201ENST00000430450 190 ntBASIC0.69□□□□□ -2.3
SHMT1P34896 SNORD67.1-201ENST00000516618 108 ntBASIC0.69□□□□□ -2.3
SHMT1P34896 RNU7-137P-201ENST00000516788 62 ntBASIC0.69□□□□□ -2.3
SHMT1P34896 RNU6-765P-201ENST00000516916 99 ntBASIC0.69□□□□□ -2.3
SHMT1P34896 IGKV1-22-201ENST00000524313 326 ntBASIC0.69□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 233.5 ms