Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 RNU2-35P-201ENST00000516446 142 ntBASIC0.77□□□□□ -2.29
HOXC9P31274 RNA5SP33-201ENST00000516687 98 ntBASIC0.77□□□□□ -2.29
HOXC9P31274 MIR548X2-201ENST00000579776 100 ntBASIC0.77□□□□□ -2.29
HOXC9P31274 Y_RNA.366-201ENST00000365540 102 ntBASIC0.76□□□□□ -2.29
HOXC9P31274 MIR193B-201ENST00000384907 83 ntBASIC0.76□□□□□ -2.29
HOXC9P31274 AL603914.1-201ENST00000401964 204 ntBASIC0.76□□□□□ -2.29
HOXC9P31274 RNU7-156P-201ENST00000517214 74 ntBASIC0.76□□□□□ -2.29
HOXC9P31274 MIR4653-201ENST00000585107 83 ntBASIC0.76□□□□□ -2.29
HOXC9P31274 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.75□□□□□ -2.29
HOXC9P31274 Y_RNA.400-201ENST00000383963 111 ntBASIC0.75□□□□□ -2.29
HOXC9P31274 RNU1-119P-201ENST00000391122 165 ntBASIC0.75□□□□□ -2.29
HOXC9P31274 RNU6-1086P-201ENST00000410930 100 ntBASIC0.75□□□□□ -2.29
HOXC9P31274 RNA5SP222-201ENST00000411039 105 ntBASIC0.75□□□□□ -2.29
HOXC9P31274 AC243829.3-201ENST00000622177 108 ntBASIC0.75□□□□□ -2.29
HOXC9P31274 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.74□□□□□ -2.29
HOXC9P31274 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.74□□□□□ -2.29
HOXC9P31274 RNU6-403P-201ENST00000363163 104 ntBASIC0.74□□□□□ -2.29
HOXC9P31274 Y_RNA.215-201ENST00000364204 112 ntBASIC0.74□□□□□ -2.29
HOXC9P31274 U8.15-201ENST00000390947 134 ntBASIC0.74□□□□□ -2.29
HOXC9P31274 RNU6-447P-201ENST00000410293 104 ntBASIC0.74□□□□□ -2.29
HOXC9P31274 RNU6-1118P-201ENST00000410382 104 ntBASIC0.74□□□□□ -2.29
HOXC9P31274 RNU6-1076P-201ENST00000410397 104 ntBASIC0.74□□□□□ -2.29
HOXC9P31274 RNU6-355P-201ENST00000410427 104 ntBASIC0.74□□□□□ -2.29
HOXC9P31274 RNU6-791P-201ENST00000410467 104 ntBASIC0.74□□□□□ -2.29
HOXC9P31274 RNU6-705P-201ENST00000410601 104 ntBASIC0.74□□□□□ -2.29
HOXC9P31274 RNU6-1100P-201ENST00000410691 104 ntBASIC0.74□□□□□ -2.29
HOXC9P31274 RNU6-860P-201ENST00000410860 104 ntBASIC0.74□□□□□ -2.29
HOXC9P31274 RNU4-83P-201ENST00000410863 133 ntBASIC0.74□□□□□ -2.29
HOXC9P31274 RNU6-1217P-201ENST00000411276 104 ntBASIC0.74□□□□□ -2.29
HOXC9P31274 RNU6-785P-201ENST00000411324 104 ntBASIC0.74□□□□□ -2.29
HOXC9P31274 AC244098.3-201ENST00000424803 96 ntBASIC0.74□□□□□ -2.29
HOXC9P31274 RNU7-56P-201ENST00000458744 62 ntBASIC0.74□□□□□ -2.29
HOXC9P31274 RNU7-102P-201ENST00000458948 62 ntBASIC0.74□□□□□ -2.29
HOXC9P31274 RNU7-123P-201ENST00000515911 60 ntBASIC0.74□□□□□ -2.29
HOXC9P31274 RNA5SP272-201ENST00000516095 111 ntBASIC0.74□□□□□ -2.29
HOXC9P31274 AC008608.1-201ENST00000603910 127 ntBASIC0.74□□□□□ -2.29
HOXC9P31274 AC108081.1-201ENST00000604358 221 ntBASIC0.74□□□□□ -2.29
HOXC9P31274 U6.90-201ENST00000614007 104 ntBASIC0.74□□□□□ -2.29
HOXC9P31274 U6.70-201ENST00000620287 104 ntBASIC0.74□□□□□ -2.29
HOXC9P31274 AC010487.4-201ENST00000637027 61 ntBASIC0.74□□□□□ -2.29
HOXC9P31274 Y_RNA.180-201ENST00000363867 113 ntBASIC0.73□□□□□ -2.29
HOXC9P31274 RNY1P13-201ENST00000365030 105 ntBASIC0.73□□□□□ -2.29
HOXC9P31274 Y_RNA.420-201ENST00000384043 110 ntBASIC0.73□□□□□ -2.29
HOXC9P31274 Y_RNA.531-201ENST00000384589 121 ntBASIC0.73□□□□□ -2.29
HOXC9P31274 MIR573-201ENST00000384964 99 ntBASIC0.73□□□□□ -2.29
HOXC9P31274 RNU6-907P-201ENST00000390924 102 ntBASIC0.73□□□□□ -2.29
HOXC9P31274 RNU7-79P-201ENST00000516082 62 ntBASIC0.73□□□□□ -2.29
HOXC9P31274 AP001328.1-201ENST00000528550 176 ntBASIC0.73□□□□□ -2.29
HOXC9P31274 MIR1273G-201ENST00000577677 100 ntBASIC0.73□□□□□ -2.29
HOXC9P31274 MIR548AE2-201ENST00000583456 67 ntBASIC0.73□□□□□ -2.29
HOXC9P31274 Y_RNA.170-201ENST00000363746 110 ntBASIC0.72□□□□□ -2.29
HOXC9P31274 RNU6-949P-201ENST00000384040 107 ntBASIC0.72□□□□□ -2.29
HOXC9P31274 SNORA72.6-201ENST00000384520 129 ntBASIC0.72□□□□□ -2.29
HOXC9P31274 MIR146A-201ENST00000385201 99 ntBASIC0.72□□□□□ -2.29
HOXC9P31274 MIR569-201ENST00000385228 96 ntBASIC0.72□□□□□ -2.29
HOXC9P31274 RNU6-229P-201ENST00000516614 102 ntBASIC0.72□□□□□ -2.29
HOXC9P31274 Y_RNA.692-201ENST00000516627 105 ntBASIC0.72□□□□□ -2.29
HOXC9P31274 HSBP1P2-201ENST00000299671 229 ntBASIC0.71□□□□□ -2.3
HOXC9P31274 Y_RNA.294-201ENST00000364916 102 ntBASIC0.71□□□□□ -2.3
HOXC9P31274 Y_RNA.298-201ENST00000364960 107 ntBASIC0.71□□□□□ -2.3
HOXC9P31274 SNORA36.2-201ENST00000384004 127 ntBASIC0.71□□□□□ -2.3
HOXC9P31274 RNU6-209P-201ENST00000384118 107 ntBASIC0.71□□□□□ -2.3
HOXC9P31274 Y_RNA.488-201ENST00000384403 102 ntBASIC0.71□□□□□ -2.3
HOXC9P31274 AL606490.4-201ENST00000423117 127 ntBASIC0.71□□□□□ -2.3
HOXC9P31274 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC0.71□□□□□ -2.3
HOXC9P31274 RNU7-35P-201ENST00000517174 62 ntBASIC0.71□□□□□ -2.3
HOXC9P31274 AL137067.1-201ENST00000615933 120 ntBASIC0.71□□□□□ -2.3
HOXC9P31274 Y_RNA.464-201ENST00000384282 110 ntBASIC0.7□□□□□ -2.3
HOXC9P31274 RNU6-426P-201ENST00000516464 97 ntBASIC0.7□□□□□ -2.3
HOXC9P31274 RNY4P20-201ENST00000516678 93 ntBASIC0.7□□□□□ -2.3
HOXC9P31274 SNORD92-201ENST00000585078 85 ntBASIC0.7□□□□□ -2.3
HOXC9P31274 Y_RNA.13-201ENST00000362403 112 ntBASIC0.69□□□□□ -2.3
HOXC9P31274 SNORD115-2-201ENST00000362842 82 ntBASIC0.69□□□□□ -2.3
HOXC9P31274 SNORD115-20-201ENST00000365099 82 ntBASIC0.69□□□□□ -2.3
HOXC9P31274 RNU6-255P-201ENST00000516957 105 ntBASIC0.69□□□□□ -2.3
HOXC9P31274 AC022523.2-201ENST00000561045 150 ntBASIC0.69□□□□□ -2.3
HOXC9P31274 MIR3121-201ENST00000579680 77 ntBASIC0.69□□□□□ -2.3
HOXC9P31274 MIR3612-201ENST00000579753 87 ntBASIC0.69□□□□□ -2.3
HOXC9P31274 Y_RNA.258-201ENST00000364613 105 ntBASIC0.68□□□□□ -2.3
HOXC9P31274 RNY1P8-201ENST00000383970 114 ntBASIC0.68□□□□□ -2.3
HOXC9P31274 MIR92A1-201ENST00000385233 78 ntBASIC0.68□□□□□ -2.3
HOXC9P31274 RNU7-200P-201ENST00000516105 62 ntBASIC0.68□□□□□ -2.3
HOXC9P31274 RNU6-346P-201ENST00000516288 111 ntBASIC0.68□□□□□ -2.3
HOXC9P31274 SNORD67.1-201ENST00000516618 108 ntBASIC0.68□□□□□ -2.3
HOXC9P31274 AC090897.1-201ENST00000580909 226 ntBASIC0.68□□□□□ -2.3
HOXC9P31274 MIR4491-201ENST00000581087 68 ntBASIC0.68□□□□□ -2.3
HOXC9P31274 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.68□□□□□ -2.3
HOXC9P31274 Y_RNA.114-201ENST00000363265 113 ntBASIC0.67□□□□□ -2.3
HOXC9P31274 RNU6-110P-201ENST00000384508 104 ntBASIC0.67□□□□□ -2.3
HOXC9P31274 Y_RNA.588-201ENST00000391254 102 ntBASIC0.67□□□□□ -2.3
HOXC9P31274 Y_RNA.617-201ENST00000410920 90 ntBASIC0.67□□□□□ -2.3
HOXC9P31274 AC096949.1-201ENST00000412047 152 ntBASIC0.67□□□□□ -2.3
HOXC9P31274 IGHVII-40-1-201ENST00000517316 58 ntBASIC0.67□□□□□ -2.3
HOXC9P31274 MIR8066-201ENST00000617280 78 ntBASIC0.67□□□□□ -2.3
HOXC9P31274 Y_RNA.42-201ENST00000362660 108 ntBASIC0.66□□□□□ -2.3
HOXC9P31274 MT-TR-201ENST00000387439 65 ntBASIC0.66□□□□□ -2.3
HOXC9P31274 RNU4-69P-201ENST00000410677 143 ntBASIC0.66□□□□□ -2.3
HOXC9P31274 SNORA25.16-201ENST00000516741 121 ntBASIC0.66□□□□□ -2.3
HOXC9P31274 RNU6-1212P-201ENST00000517023 104 ntBASIC0.66□□□□□ -2.3
HOXC9P31274 DEFB131E-201ENST00000532329 154 ntBASIC0.66□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 228.3 ms