Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 MIR1273G-201ENST00000577677 100 ntBASIC0.37□□□□□ -2.35
ATG4BQ9Y4P1 U6.106-201ENST00000636360 105 ntBASIC0.37□□□□□ -2.35
ATG4BQ9Y4P1 MTND5P32-201ENST00000560711 1802 ntBASIC0.36□□□□□ -2.35
ATG4BQ9Y4P1 SNORA20.1-201ENST00000364790 130 ntBASIC0.36□□□□□ -2.35
ATG4BQ9Y4P1 Y_RNA.412-201ENST00000384001 104 ntBASIC0.36□□□□□ -2.35
ATG4BQ9Y4P1 SNORA18-201ENST00000384416 132 ntBASIC0.36□□□□□ -2.35
ATG4BQ9Y4P1 SNORA72.6-201ENST00000384520 129 ntBASIC0.36□□□□□ -2.35
ATG4BQ9Y4P1 U8.15-201ENST00000390947 134 ntBASIC0.36□□□□□ -2.35
ATG4BQ9Y4P1 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.36□□□□□ -2.35
ATG4BQ9Y4P1 RNU4-71P-201ENST00000516258 113 ntBASIC0.36□□□□□ -2.35
ATG4BQ9Y4P1 RNU6-111P-201ENST00000517179 105 ntBASIC0.36□□□□□ -2.35
ATG4BQ9Y4P1 U4.1-201ENST00000620349 87 ntBASIC0.36□□□□□ -2.35
ATG4BQ9Y4P1 MIR6841-201ENST00000637129 72 ntBASIC0.36□□□□□ -2.35
ATG4BQ9Y4P1 Y_RNA.13-201ENST00000362403 112 ntBASIC0.35□□□□□ -2.35
ATG4BQ9Y4P1 RNA5SP517-201ENST00000364724 117 ntBASIC0.35□□□□□ -2.35
ATG4BQ9Y4P1 VTRNA1-3-201ENST00000365645 89 ntBASIC0.35□□□□□ -2.35
ATG4BQ9Y4P1 Y_RNA.515-201ENST00000384535 112 ntBASIC0.35□□□□□ -2.35
ATG4BQ9Y4P1 RNA5SP94-201ENST00000516917 108 ntBASIC0.35□□□□□ -2.35
ATG4BQ9Y4P1 MIR3678-201ENST00000578455 94 ntBASIC0.35□□□□□ -2.35
ATG4BQ9Y4P1 MIR8066-201ENST00000617280 78 ntBASIC0.35□□□□□ -2.35
ATG4BQ9Y4P1 Y_RNA.42-201ENST00000362660 108 ntBASIC0.34□□□□□ -2.36
ATG4BQ9Y4P1 RNU6-702P-201ENST00000364982 107 ntBASIC0.34□□□□□ -2.36
ATG4BQ9Y4P1 Y_RNA.447-201ENST00000384184 113 ntBASIC0.34□□□□□ -2.36
ATG4BQ9Y4P1 RNU6-196P-201ENST00000384315 107 ntBASIC0.34□□□□□ -2.36
ATG4BQ9Y4P1 Y_RNA.567-201ENST00000384736 106 ntBASIC0.34□□□□□ -2.36
ATG4BQ9Y4P1 SNORD58.1-201ENST00000391313 66 ntBASIC0.34□□□□□ -2.36
ATG4BQ9Y4P1 SNORD71-201ENST00000411292 86 ntBASIC0.34□□□□□ -2.36
ATG4BQ9Y4P1 MTND3P2-201ENST00000438452 342 ntBASIC0.34□□□□□ -2.36
ATG4BQ9Y4P1 RNU6-1023P-201ENST00000516137 106 ntBASIC0.34□□□□□ -2.36
ATG4BQ9Y4P1 MRPS18CP4-201ENST00000535821 231 ntBASIC0.34□□□□□ -2.36
ATG4BQ9Y4P1 AC133485.4-201ENST00000561835 220 ntBASIC0.34□□□□□ -2.36
ATG4BQ9Y4P1 MIRLET7D-201ENST00000362263 87 ntBASIC0.33□□□□□ -2.36
ATG4BQ9Y4P1 Y_RNA.307-201ENST00000365022 117 ntBASIC0.33□□□□□ -2.36
ATG4BQ9Y4P1 RNY1P6-201ENST00000384193 109 ntBASIC0.33□□□□□ -2.36
ATG4BQ9Y4P1 RNU6-574P-201ENST00000384265 107 ntBASIC0.33□□□□□ -2.36
ATG4BQ9Y4P1 RNU6-469P-201ENST00000516253 101 ntBASIC0.33□□□□□ -2.36
ATG4BQ9Y4P1 MIR4503-201ENST00000582187 83 ntBASIC0.33□□□□□ -2.36
ATG4BQ9Y4P1 SNORA25.18-201ENST00000607153 114 ntBASIC0.33□□□□□ -2.36
ATG4BQ9Y4P1 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC0.33□□□□□ -2.36
ATG4BQ9Y4P1 uc_338.16-201ENST00000621804 95 ntBASIC0.33□□□□□ -2.36
ATG4BQ9Y4P1 MIR924-201ENST00000638017 53 ntBASIC0.33□□□□□ -2.36
ATG4BQ9Y4P1 Y_RNA.75-201ENST00000362927 97 ntBASIC0.32□□□□□ -2.36
ATG4BQ9Y4P1 Y_RNA.171-201ENST00000363760 102 ntBASIC0.32□□□□□ -2.36
ATG4BQ9Y4P1 SNORA40.8-201ENST00000411034 126 ntBASIC0.32□□□□□ -2.36
ATG4BQ9Y4P1 RNU6-893P-201ENST00000458841 100 ntBASIC0.32□□□□□ -2.36
ATG4BQ9Y4P1 MIR4491-201ENST00000581087 68 ntBASIC0.32□□□□□ -2.36
ATG4BQ9Y4P1 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC0.32□□□□□ -2.36
ATG4BQ9Y4P1 MIR6082-201ENST00000613604 109 ntBASIC0.32□□□□□ -2.36
ATG4BQ9Y4P1 Y_RNA.52-201ENST00000362760 96 ntBASIC0.31□□□□□ -2.36
ATG4BQ9Y4P1 RNU6-1327P-201ENST00000365302 105 ntBASIC0.31□□□□□ -2.36
ATG4BQ9Y4P1 RNU6-949P-201ENST00000384040 107 ntBASIC0.31□□□□□ -2.36
ATG4BQ9Y4P1 MIR644A-201ENST00000385262 94 ntBASIC0.31□□□□□ -2.36
ATG4BQ9Y4P1 RNU6-918P-201ENST00000391219 106 ntBASIC0.31□□□□□ -2.36
ATG4BQ9Y4P1 Y_RNA.588-201ENST00000391254 102 ntBASIC0.31□□□□□ -2.36
ATG4BQ9Y4P1 RNU5E-9P-201ENST00000411164 104 ntBASIC0.31□□□□□ -2.36
ATG4BQ9Y4P1 RNU6-1258P-201ENST00000516911 111 ntBASIC0.31□□□□□ -2.36
ATG4BQ9Y4P1 Y_RNA.757-201ENST00000578934 114 ntBASIC0.31□□□□□ -2.36
ATG4BQ9Y4P1 MIR4431-201ENST00000579990 94 ntBASIC0.31□□□□□ -2.36
ATG4BQ9Y4P1 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.31□□□□□ -2.36
ATG4BQ9Y4P1 MIR411-201ENST00000362239 96 ntBASIC0.3□□□□□ -2.36
ATG4BQ9Y4P1 Y_RNA.83-201ENST00000363005 113 ntBASIC0.3□□□□□ -2.36
ATG4BQ9Y4P1 RNA5SP325-201ENST00000363756 130 ntBASIC0.3□□□□□ -2.36
ATG4BQ9Y4P1 Y_RNA.200-201ENST00000364018 102 ntBASIC0.3□□□□□ -2.36
ATG4BQ9Y4P1 RNY1P13-201ENST00000365030 105 ntBASIC0.3□□□□□ -2.36
ATG4BQ9Y4P1 RNU6-47P-201ENST00000383866 107 ntBASIC0.3□□□□□ -2.36
ATG4BQ9Y4P1 RNU6-768P-201ENST00000384683 107 ntBASIC0.3□□□□□ -2.36
ATG4BQ9Y4P1 MIR518A1-201ENST00000385068 85 ntBASIC0.3□□□□□ -2.36
ATG4BQ9Y4P1 RNA5SP134-201ENST00000516492 96 ntBASIC0.3□□□□□ -2.36
ATG4BQ9Y4P1 AP003327.1-201ENST00000529684 127 ntBASIC0.3□□□□□ -2.36
ATG4BQ9Y4P1 MIR3149-201ENST00000584629 83 ntBASIC0.3□□□□□ -2.36
ATG4BQ9Y4P1 MIR103A1-201ENST00000362165 78 ntBASIC0.29□□□□□ -2.36
ATG4BQ9Y4P1 RNU6-1020P-201ENST00000363684 107 ntBASIC0.29□□□□□ -2.36
ATG4BQ9Y4P1 Y_RNA.193-201ENST00000363979 102 ntBASIC0.29□□□□□ -2.36
ATG4BQ9Y4P1 SNORA8.2-201ENST00000384372 139 ntBASIC0.29□□□□□ -2.36
ATG4BQ9Y4P1 RNU6-1086P-201ENST00000410930 100 ntBASIC0.29□□□□□ -2.36
ATG4BQ9Y4P1 RNU7-113P-201ENST00000459273 62 ntBASIC0.29□□□□□ -2.36
ATG4BQ9Y4P1 RNU6-863P-201ENST00000515989 104 ntBASIC0.29□□□□□ -2.36
ATG4BQ9Y4P1 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.29□□□□□ -2.36
ATG4BQ9Y4P1 Y_RNA.32-201ENST00000362589 110 ntBASIC0.28□□□□□ -2.36
ATG4BQ9Y4P1 RNU6-1082P-201ENST00000364574 107 ntBASIC0.28□□□□□ -2.36
ATG4BQ9Y4P1 SNORA32-201ENST00000384072 121 ntBASIC0.28□□□□□ -2.36
ATG4BQ9Y4P1 Y_RNA.452-201ENST00000384202 108 ntBASIC0.28□□□□□ -2.36
ATG4BQ9Y4P1 RNA5SP144-201ENST00000410846 116 ntBASIC0.28□□□□□ -2.36
ATG4BQ9Y4P1 AL022718.1-201ENST00000412004 84 ntBASIC0.28□□□□□ -2.36
ATG4BQ9Y4P1 AC096949.1-201ENST00000412047 152 ntBASIC0.28□□□□□ -2.36
ATG4BQ9Y4P1 AL512326.2-201ENST00000426359 151 ntBASIC0.28□□□□□ -2.36
ATG4BQ9Y4P1 AC107027.2-201ENST00000512197 115 ntBASIC0.28□□□□□ -2.36
ATG4BQ9Y4P1 RNA5SP33-201ENST00000516687 98 ntBASIC0.28□□□□□ -2.36
ATG4BQ9Y4P1 SNORA25.16-201ENST00000516741 121 ntBASIC0.28□□□□□ -2.36
ATG4BQ9Y4P1 Y_RNA.697-201ENST00000516776 113 ntBASIC0.28□□□□□ -2.36
ATG4BQ9Y4P1 DEFB131E-201ENST00000532329 154 ntBASIC0.28□□□□□ -2.36
ATG4BQ9Y4P1 AC022523.2-201ENST00000561045 150 ntBASIC0.28□□□□□ -2.36
ATG4BQ9Y4P1 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.28□□□□□ -2.36
ATG4BQ9Y4P1 RNU6-690P-201ENST00000365242 106 ntBASIC0.27□□□□□ -2.37
ATG4BQ9Y4P1 Y_RNA.470-201ENST00000384307 117 ntBASIC0.27□□□□□ -2.37
ATG4BQ9Y4P1 AC108740.1-201ENST00000498629 225 ntBASIC0.27□□□□□ -2.37
ATG4BQ9Y4P1 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC0.27□□□□□ -2.37
ATG4BQ9Y4P1 RNU7-79P-201ENST00000516082 62 ntBASIC0.27□□□□□ -2.37
ATG4BQ9Y4P1 MTND5P34-201ENST00000568888 325 ntBASIC0.27□□□□□ -2.37
ATG4BQ9Y4P1 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.27□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 193.1 ms