Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 MIR1-1-201ENST00000362147 71 ntBASIC0.86□□□□□ -2.27
LIMA1Q9UHB6 RNU6-369P-201ENST00000362515 102 ntBASIC0.86□□□□□ -2.27
LIMA1Q9UHB6 MIR605-201ENST00000385078 83 ntBASIC0.86□□□□□ -2.27
LIMA1Q9UHB6 MIR100-201ENST00000385259 80 ntBASIC0.86□□□□□ -2.27
LIMA1Q9UHB6 AL512326.2-201ENST00000426359 151 ntBASIC0.86□□□□□ -2.27
LIMA1Q9UHB6 RNU7-123P-201ENST00000515911 60 ntBASIC0.86□□□□□ -2.27
LIMA1Q9UHB6 RNU5E-3P-201ENST00000515913 68 ntBASIC0.86□□□□□ -2.27
LIMA1Q9UHB6 Y_RNA.692-201ENST00000516627 105 ntBASIC0.86□□□□□ -2.27
LIMA1Q9UHB6 AC133485.4-201ENST00000561835 220 ntBASIC0.86□□□□□ -2.27
LIMA1Q9UHB6 AC138907.4-201ENST00000570107 226 ntBASIC0.86□□□□□ -2.27
LIMA1Q9UHB6 MIR3152-201ENST00000579801 74 ntBASIC0.86□□□□□ -2.27
LIMA1Q9UHB6 AC021443.1-201ENST00000604478 211 ntBASIC0.86□□□□□ -2.27
LIMA1Q9UHB6 MIR30D-201ENST00000362283 70 ntBASIC0.85□□□□□ -2.27
LIMA1Q9UHB6 RNU6-704P-201ENST00000364162 103 ntBASIC0.85□□□□□ -2.27
LIMA1Q9UHB6 RNU6-342P-201ENST00000384521 104 ntBASIC0.85□□□□□ -2.27
LIMA1Q9UHB6 MIR588-201ENST00000384900 83 ntBASIC0.85□□□□□ -2.27
LIMA1Q9UHB6 MIR613-201ENST00000385248 95 ntBASIC0.85□□□□□ -2.27
LIMA1Q9UHB6 SNORA40-201ENST00000388090 126 ntBASIC0.85□□□□□ -2.27
LIMA1Q9UHB6 MIR548M-201ENST00000408260 86 ntBASIC0.85□□□□□ -2.27
LIMA1Q9UHB6 SNORD83.1-201ENST00000411362 77 ntBASIC0.85□□□□□ -2.27
LIMA1Q9UHB6 MIR1270-201ENST00000459320 83 ntBASIC0.85□□□□□ -2.27
LIMA1Q9UHB6 AC113410.1-201ENST00000505029 247 ntBASIC0.85□□□□□ -2.27
LIMA1Q9UHB6 PSMC1P5-201ENST00000512850 177 ntBASIC0.85□□□□□ -2.27
LIMA1Q9UHB6 RNA5SP102-201ENST00000516865 106 ntBASIC0.85□□□□□ -2.27
LIMA1Q9UHB6 Y_RNA.164-201ENST00000363709 102 ntBASIC0.84□□□□□ -2.27
LIMA1Q9UHB6 Y_RNA.298-201ENST00000364960 107 ntBASIC0.84□□□□□ -2.27
LIMA1Q9UHB6 RNU6-934P-201ENST00000365154 107 ntBASIC0.84□□□□□ -2.27
LIMA1Q9UHB6 SNORD99-201ENST00000408612 74 ntBASIC0.84□□□□□ -2.27
LIMA1Q9UHB6 Y_RNA.617-201ENST00000410920 90 ntBASIC0.84□□□□□ -2.27
LIMA1Q9UHB6 AL158147.1-201ENST00000443970 75 ntBASIC0.84□□□□□ -2.27
LIMA1Q9UHB6 RNY4P20-201ENST00000516678 93 ntBASIC0.84□□□□□ -2.27
LIMA1Q9UHB6 AC004812.1-201ENST00000540773 146 ntBASIC0.84□□□□□ -2.27
LIMA1Q9UHB6 AC022523.2-201ENST00000561045 150 ntBASIC0.84□□□□□ -2.27
LIMA1Q9UHB6 AL137067.1-201ENST00000615933 120 ntBASIC0.84□□□□□ -2.27
LIMA1Q9UHB6 MIR373-201ENST00000362273 69 ntBASIC0.83□□□□□ -2.28
LIMA1Q9UHB6 Y_RNA.4-201ENST00000362333 112 ntBASIC0.83□□□□□ -2.28
LIMA1Q9UHB6 RNU6-235P-201ENST00000362644 107 ntBASIC0.83□□□□□ -2.28
LIMA1Q9UHB6 SNORD115-2-201ENST00000362842 82 ntBASIC0.83□□□□□ -2.28
LIMA1Q9UHB6 SNORD115-20-201ENST00000365099 82 ntBASIC0.83□□□□□ -2.28
LIMA1Q9UHB6 RNU6-1104P-201ENST00000384723 104 ntBASIC0.83□□□□□ -2.28
LIMA1Q9UHB6 MIR146A-201ENST00000385201 99 ntBASIC0.83□□□□□ -2.28
LIMA1Q9UHB6 SNORD105-201ENST00000386910 85 ntBASIC0.83□□□□□ -2.28
LIMA1Q9UHB6 RNU6ATAC3P-201ENST00000387974 126 ntBASIC0.83□□□□□ -2.28
LIMA1Q9UHB6 AL603908.1-201ENST00000406098 201 ntBASIC0.83□□□□□ -2.28
LIMA1Q9UHB6 RNU6-1165P-201ENST00000410119 107 ntBASIC0.83□□□□□ -2.28
LIMA1Q9UHB6 RNA5SP247-201ENST00000411181 105 ntBASIC0.83□□□□□ -2.28
LIMA1Q9UHB6 RPS26P5-201ENST00000418544 335 ntBASIC0.83□□□□□ -2.28
LIMA1Q9UHB6 AC015818.7-201ENST00000428754 109 ntBASIC0.83□□□□□ -2.28
LIMA1Q9UHB6 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.83□□□□□ -2.28
LIMA1Q9UHB6 AC087499.7-201ENST00000441958 109 ntBASIC0.83□□□□□ -2.28
LIMA1Q9UHB6 RNU7-164P-201ENST00000459221 62 ntBASIC0.83□□□□□ -2.28
LIMA1Q9UHB6 RNU6-781P-201ENST00000516377 101 ntBASIC0.83□□□□□ -2.28
LIMA1Q9UHB6 RNU6-971P-201ENST00000516920 106 ntBASIC0.83□□□□□ -2.28
LIMA1Q9UHB6 AL662814.1-201ENST00000617364 121 ntBASIC0.83□□□□□ -2.28
LIMA1Q9UHB6 Y_RNA.218-201ENST00000364218 104 ntBASIC0.82□□□□□ -2.28
LIMA1Q9UHB6 Y_RNA.354-201ENST00000365448 111 ntBASIC0.82□□□□□ -2.28
LIMA1Q9UHB6 SNORA18-201ENST00000384416 132 ntBASIC0.82□□□□□ -2.28
LIMA1Q9UHB6 Y_RNA.531-201ENST00000384589 121 ntBASIC0.82□□□□□ -2.28
LIMA1Q9UHB6 MT-TI-201ENST00000387365 69 ntBASIC0.82□□□□□ -2.28
LIMA1Q9UHB6 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.82□□□□□ -2.28
LIMA1Q9UHB6 AL022718.1-201ENST00000412004 84 ntBASIC0.82□□□□□ -2.28
LIMA1Q9UHB6 AC096949.1-201ENST00000412047 152 ntBASIC0.82□□□□□ -2.28
LIMA1Q9UHB6 RNU7-113P-201ENST00000459273 62 ntBASIC0.82□□□□□ -2.28
LIMA1Q9UHB6 RN7SKP19-201ENST00000516016 252 ntBASIC0.82□□□□□ -2.28
LIMA1Q9UHB6 MIR4771-2-201ENST00000577758 74 ntBASIC0.82□□□□□ -2.28
LIMA1Q9UHB6 MIR4771-1-201ENST00000582617 74 ntBASIC0.82□□□□□ -2.28
LIMA1Q9UHB6 MIR548AE2-201ENST00000583456 67 ntBASIC0.82□□□□□ -2.28
LIMA1Q9UHB6 TUG1_4.1-201ENST00000619464 181 ntBASIC0.82□□□□□ -2.28
LIMA1Q9UHB6 AC023934.1-201ENST00000574529 2389 ntBASIC0.81□□□□□ -2.28
LIMA1Q9UHB6 Y_RNA.525-201ENST00000384570 113 ntBASIC0.81□□□□□ -2.28
LIMA1Q9UHB6 RNU6-1237P-201ENST00000384777 107 ntBASIC0.81□□□□□ -2.28
LIMA1Q9UHB6 MIRLET7F2-201ENST00000385277 83 ntBASIC0.81□□□□□ -2.28
LIMA1Q9UHB6 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.81□□□□□ -2.28
LIMA1Q9UHB6 MIR6767-201ENST00000637302 66 ntBASIC0.81□□□□□ -2.28
LIMA1Q9UHB6 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.81□□□□□ -2.28
LIMA1Q9UHB6 RNU6-647P-201ENST00000364243 107 ntBASIC0.8□□□□□ -2.28
LIMA1Q9UHB6 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.8□□□□□ -2.28
LIMA1Q9UHB6 RNU6-893P-201ENST00000458841 100 ntBASIC0.8□□□□□ -2.28
LIMA1Q9UHB6 RNU6-1211P-201ENST00000459179 105 ntBASIC0.8□□□□□ -2.28
LIMA1Q9UHB6 RNA5SP33-201ENST00000516687 98 ntBASIC0.8□□□□□ -2.28
LIMA1Q9UHB6 RNU7-35P-201ENST00000517174 62 ntBASIC0.8□□□□□ -2.28
LIMA1Q9UHB6 AC141846.1-201ENST00000568348 142 ntBASIC0.8□□□□□ -2.28
LIMA1Q9UHB6 MIR4653-201ENST00000585107 83 ntBASIC0.8□□□□□ -2.28
LIMA1Q9UHB6 AC020891.4-201ENST00000605745 93 ntBASIC0.8□□□□□ -2.28
LIMA1Q9UHB6 MIR6866-201ENST00000638146 69 ntBASIC0.8□□□□□ -2.28
LIMA1Q9UHB6 MIR96-201ENST00000362288 78 ntBASIC0.79□□□□□ -2.28
LIMA1Q9UHB6 RNY1P13-201ENST00000365030 105 ntBASIC0.79□□□□□ -2.28
LIMA1Q9UHB6 SNORA25.9-201ENST00000365087 128 ntBASIC0.79□□□□□ -2.28
LIMA1Q9UHB6 SNORD58C-201ENST00000365223 64 ntBASIC0.79□□□□□ -2.28
LIMA1Q9UHB6 RNU6ATAC42P-201ENST00000408637 95 ntBASIC0.79□□□□□ -2.28
LIMA1Q9UHB6 Y_RNA.630-201ENST00000411370 108 ntBASIC0.79□□□□□ -2.28
LIMA1Q9UHB6 RNU7-107P-201ENST00000459121 61 ntBASIC0.79□□□□□ -2.28
LIMA1Q9UHB6 RNU6-977P-201ENST00000516411 103 ntBASIC0.79□□□□□ -2.28
LIMA1Q9UHB6 RNU6-1234P-201ENST00000516877 103 ntBASIC0.79□□□□□ -2.28
LIMA1Q9UHB6 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.79□□□□□ -2.28
LIMA1Q9UHB6 RMST_2.1-201ENST00000617263 136 ntBASIC0.79□□□□□ -2.28
LIMA1Q9UHB6 HSBP1P2-201ENST00000299671 229 ntBASIC0.78□□□□□ -2.28
LIMA1Q9UHB6 SNORA32-201ENST00000384072 121 ntBASIC0.78□□□□□ -2.28
LIMA1Q9UHB6 MT-TF-201ENST00000387314 71 ntBASIC0.78□□□□□ -2.28
LIMA1Q9UHB6 RNU6-735P-201ENST00000410612 107 ntBASIC0.78□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 299.6 ms