Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.64□□□□□ -1.99
LIMD1Q9UGP4 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
LIMD1Q9UGP4 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
LIMD1Q9UGP4 RNU6-279P-201ENST00000391297 101 ntBASIC2.64□□□□□ -1.99
LIMD1Q9UGP4 RNU6ATAC42P-201ENST00000408637 95 ntBASIC2.64□□□□□ -1.99
LIMD1Q9UGP4 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.64□□□□□ -1.99
LIMD1Q9UGP4 MIR8066-201ENST00000617280 78 ntBASIC2.64□□□□□ -1.99
LIMD1Q9UGP4 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
LIMD1Q9UGP4 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.63□□□□□ -1.99
LIMD1Q9UGP4 MIR1302-7-201ENST00000408841 72 ntBASIC2.63□□□□□ -1.99
LIMD1Q9UGP4 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC2.63□□□□□ -1.99
LIMD1Q9UGP4 RN7SL274P-201ENST00000492268 272 ntBASIC2.63□□□□□ -1.99
LIMD1Q9UGP4 AL133373.1-201ENST00000497098 94 ntBASIC2.63□□□□□ -1.99
LIMD1Q9UGP4 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.63□□□□□ -1.99
LIMD1Q9UGP4 RNU6-787P-201ENST00000384032 107 ntBASIC2.62□□□□□ -1.99
LIMD1Q9UGP4 MT-TF-201ENST00000387314 71 ntBASIC2.62□□□□□ -1.99
LIMD1Q9UGP4 RNU6-482P-201ENST00000391068 107 ntBASIC2.62□□□□□ -1.99
LIMD1Q9UGP4 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
LIMD1Q9UGP4 Y_RNA.191-201ENST00000363972 113 ntBASIC2.61□□□□□ -1.99
LIMD1Q9UGP4 RNA5SP99-201ENST00000364020 114 ntBASIC2.61□□□□□ -1.99
LIMD1Q9UGP4 HMGN2P35-201ENST00000412164 270 ntBASIC2.61□□□□□ -1.99
LIMD1Q9UGP4 AL356320.1-201ENST00000429616 163 ntBASIC2.61□□□□□ -1.99
LIMD1Q9UGP4 RPS27P21-201ENST00000486977 252 ntBASIC2.61□□□□□ -1.99
LIMD1Q9UGP4 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.6□□□□□ -1.99
LIMD1Q9UGP4 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.6□□□□□ -1.99
LIMD1Q9UGP4 AL359851.1-201ENST00000569460 4997 ntBASIC2.6□□□□□ -1.99
LIMD1Q9UGP4 MIR377-201ENST00000362145 69 ntBASIC2.6□□□□□ -1.99
LIMD1Q9UGP4 SNORD33-201ENST00000362761 85 ntBASIC2.6□□□□□ -1.99
LIMD1Q9UGP4 RNU6-571P-201ENST00000384128 107 ntBASIC2.6□□□□□ -1.99
LIMD1Q9UGP4 MIR519C-201ENST00000385053 87 ntBASIC2.6□□□□□ -1.99
LIMD1Q9UGP4 RNU6-1165P-201ENST00000410119 107 ntBASIC2.6□□□□□ -1.99
LIMD1Q9UGP4 AL603825.1-201ENST00000438481 80 ntBASIC2.6□□□□□ -1.99
LIMD1Q9UGP4 RNU7-62P-201ENST00000458856 62 ntBASIC2.6□□□□□ -1.99
LIMD1Q9UGP4 SNORA44.1-201ENST00000517031 108 ntBASIC2.6□□□□□ -1.99
LIMD1Q9UGP4 AC138749.4-201ENST00000563970 127 ntBASIC2.6□□□□□ -1.99
LIMD1Q9UGP4 AC090897.1-201ENST00000580909 226 ntBASIC2.6□□□□□ -1.99
LIMD1Q9UGP4 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC2.6□□□□□ -1.99
LIMD1Q9UGP4 SNORD115-37-201ENST00000363768 82 ntBASIC2.59□□□□□ -1.99
LIMD1Q9UGP4 RNU6-613P-201ENST00000410412 108 ntBASIC2.59□□□□□ -1.99
LIMD1Q9UGP4 RNU6-519P-201ENST00000410590 108 ntBASIC2.59□□□□□ -1.99
LIMD1Q9UGP4 SNRPGP12-201ENST00000449481 213 ntBASIC2.59□□□□□ -1.99
LIMD1Q9UGP4 RNU6-947P-201ENST00000516264 106 ntBASIC2.59□□□□□ -1.99
LIMD1Q9UGP4 RNU6-548P-201ENST00000517083 115 ntBASIC2.59□□□□□ -1.99
LIMD1Q9UGP4 MIR6740-201ENST00000618268 113 ntBASIC2.59□□□□□ -1.99
LIMD1Q9UGP4 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC2.58□□□□□ -2
LIMD1Q9UGP4 AL596028.1-201ENST00000326971 197 ntBASIC2.58□□□□□ -2
LIMD1Q9UGP4 SNORA25.3-201ENST00000363205 127 ntBASIC2.58□□□□□ -2
LIMD1Q9UGP4 RNA5SP393-201ENST00000363423 117 ntBASIC2.58□□□□□ -2
LIMD1Q9UGP4 RPL30P7-201ENST00000479312 323 ntBASIC2.58□□□□□ -2
LIMD1Q9UGP4 MIR1273D-201ENST00000577266 86 ntBASIC2.58□□□□□ -2
LIMD1Q9UGP4 MIR4500-201ENST00000579472 76 ntBASIC2.58□□□□□ -2
LIMD1Q9UGP4 U6.109-201ENST00000636749 87 ntBASIC2.58□□□□□ -2
LIMD1Q9UGP4 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC2.58□□□□□ -2
LIMD1Q9UGP4 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
LIMD1Q9UGP4 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.58□□□□□ -2
LIMD1Q9UGP4 AC008163.1-202ENST00000636004 2889 ntBASIC2.57□□□□□ -2
LIMD1Q9UGP4 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.57□□□□□ -2
LIMD1Q9UGP4 MIR30D-201ENST00000362283 70 ntBASIC2.57□□□□□ -2
LIMD1Q9UGP4 RNA5SP133-201ENST00000363368 119 ntBASIC2.57□□□□□ -2
LIMD1Q9UGP4 SNORA16B-201ENST00000364674 135 ntBASIC2.57□□□□□ -2
LIMD1Q9UGP4 Y_RNA.313-201ENST00000365095 103 ntBASIC2.57□□□□□ -2
LIMD1Q9UGP4 RNU6-24P-201ENST00000384440 107 ntBASIC2.57□□□□□ -2
LIMD1Q9UGP4 AL359511.1-201ENST00000402970 211 ntBASIC2.57□□□□□ -2
LIMD1Q9UGP4 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.57□□□□□ -2
LIMD1Q9UGP4 snoU13.9-201ENST00000458927 103 ntBASIC2.57□□□□□ -2
LIMD1Q9UGP4 MIR4446-201ENST00000578505 67 ntBASIC2.57□□□□□ -2
LIMD1Q9UGP4 AC046143.2-201ENST00000609789 160 ntBASIC2.57□□□□□ -2
LIMD1Q9UGP4 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.57□□□□□ -2
LIMD1Q9UGP4 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC2.57□□□□□ -2
LIMD1Q9UGP4 SNORD114-1-201ENST00000362705 72 ntBASIC2.56□□□□□ -2
LIMD1Q9UGP4 Y_RNA.57-201ENST00000362806 113 ntBASIC2.56□□□□□ -2
LIMD1Q9UGP4 Y_RNA.676-201ENST00000516393 96 ntBASIC2.56□□□□□ -2
LIMD1Q9UGP4 MIR3670-2-201ENST00000582974 65 ntBASIC2.56□□□□□ -2
LIMD1Q9UGP4 MIR3670-1-201ENST00000584160 65 ntBASIC2.56□□□□□ -2
LIMD1Q9UGP4 MIR3670-3-201ENST00000584855 65 ntBASIC2.56□□□□□ -2
LIMD1Q9UGP4 AL512598.1-201ENST00000610158 273 ntBASIC2.56□□□□□ -2
LIMD1Q9UGP4 MIR3670-4-201ENST00000612260 65 ntBASIC2.56□□□□□ -2
LIMD1Q9UGP4 MIR8063-201ENST00000621930 81 ntBASIC2.56□□□□□ -2
LIMD1Q9UGP4 Y_RNA.244-201ENST00000364484 109 ntBASIC2.55□□□□□ -2
LIMD1Q9UGP4 AC093729.1-201ENST00000513074 128 ntBASIC2.55□□□□□ -2
LIMD1Q9UGP4 RNU6-857P-201ENST00000515893 110 ntBASIC2.55□□□□□ -2
LIMD1Q9UGP4 AP003716.2-201ENST00000528260 108 ntBASIC2.55□□□□□ -2
LIMD1Q9UGP4 AC121758.2-201ENST00000553271 193 ntBASIC2.55□□□□□ -2
LIMD1Q9UGP4 MIR4299-201ENST00000577899 72 ntBASIC2.55□□□□□ -2
LIMD1Q9UGP4 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.55□□□□□ -2
LIMD1Q9UGP4 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.55□□□□□ -2
LIMD1Q9UGP4 AC080100.1-201ENST00000624239 5356 ntBASIC2.54□□□□□ -2
LIMD1Q9UGP4 MIR103A2-201ENST00000362154 78 ntBASIC2.54□□□□□ -2
LIMD1Q9UGP4 Y_RNA.119-201ENST00000363301 96 ntBASIC2.54□□□□□ -2
LIMD1Q9UGP4 RNU6-53P-201ENST00000365367 106 ntBASIC2.54□□□□□ -2
LIMD1Q9UGP4 RNU6-1065P-201ENST00000384513 106 ntBASIC2.54□□□□□ -2
LIMD1Q9UGP4 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC2.54□□□□□ -2
LIMD1Q9UGP4 RNU6-205P-201ENST00000390858 107 ntBASIC2.54□□□□□ -2
LIMD1Q9UGP4 RNA5SP210-201ENST00000391034 120 ntBASIC2.54□□□□□ -2
LIMD1Q9UGP4 5S_rRNA.2-201ENST00000391293 112 ntBASIC2.54□□□□□ -2
LIMD1Q9UGP4 RNU6-850P-201ENST00000516934 103 ntBASIC2.54□□□□□ -2
LIMD1Q9UGP4 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC2.54□□□□□ -2
LIMD1Q9UGP4 AC019288.1-201ENST00000557918 224 ntBASIC2.54□□□□□ -2
LIMD1Q9UGP4 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.54□□□□□ -2
LIMD1Q9UGP4 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.53□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 226.9 ms