Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.78□□□□□ -2.12
TRAIPQ9BWF2 MIR1-1-201ENST00000362147 71 ntBASIC1.78□□□□□ -2.12
TRAIPQ9BWF2 Y_RNA.261-201ENST00000364631 102 ntBASIC1.78□□□□□ -2.12
TRAIPQ9BWF2 Y_RNA.338-201ENST00000365320 114 ntBASIC1.78□□□□□ -2.12
TRAIPQ9BWF2 RNU6-1168P-201ENST00000390831 104 ntBASIC1.78□□□□□ -2.12
TRAIPQ9BWF2 RNU6ATAC6P-201ENST00000408132 126 ntBASIC1.78□□□□□ -2.12
TRAIPQ9BWF2 RNU6ATAC42P-201ENST00000408637 95 ntBASIC1.78□□□□□ -2.12
TRAIPQ9BWF2 RNU2-51P-201ENST00000410708 197 ntBASIC1.78□□□□□ -2.12
TRAIPQ9BWF2 Y_RNA.630-201ENST00000411370 108 ntBASIC1.78□□□□□ -2.12
TRAIPQ9BWF2 Y_RNA.649-201ENST00000459077 103 ntBASIC1.78□□□□□ -2.12
TRAIPQ9BWF2 MIR548AI-201ENST00000579940 88 ntBASIC1.78□□□□□ -2.12
TRAIPQ9BWF2 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.77□□□□□ -2.13
TRAIPQ9BWF2 AC023934.1-201ENST00000574529 2389 ntBASIC1.77□□□□□ -2.13
TRAIPQ9BWF2 Y_RNA.525-201ENST00000384570 113 ntBASIC1.77□□□□□ -2.13
TRAIPQ9BWF2 MIR19B1-201ENST00000384829 87 ntBASIC1.77□□□□□ -2.13
TRAIPQ9BWF2 MIR942-201ENST00000401111 86 ntBASIC1.77□□□□□ -2.13
TRAIPQ9BWF2 MIR1257-201ENST00000408490 117 ntBASIC1.77□□□□□ -2.13
TRAIPQ9BWF2 SNORD83.1-201ENST00000411362 77 ntBASIC1.77□□□□□ -2.13
TRAIPQ9BWF2 RNA5SP404-201ENST00000517118 132 ntBASIC1.77□□□□□ -2.13
TRAIPQ9BWF2 FAM71BP1-201ENST00000604431 523 ntBASIC1.77□□□□□ -2.13
TRAIPQ9BWF2 AL670379.3-201ENST00000605040 251 ntBASIC1.77□□□□□ -2.13
TRAIPQ9BWF2 MIR100-201ENST00000385259 80 ntBASIC1.76□□□□□ -2.13
TRAIPQ9BWF2 MIR4771-2-201ENST00000577758 74 ntBASIC1.76□□□□□ -2.13
TRAIPQ9BWF2 MIR4771-1-201ENST00000582617 74 ntBASIC1.76□□□□□ -2.13
TRAIPQ9BWF2 RNU6-949P-201ENST00000384040 107 ntBASIC1.75□□□□□ -2.13
TRAIPQ9BWF2 SNORD93-201ENST00000408813 74 ntBASIC1.75□□□□□ -2.13
TRAIPQ9BWF2 RPS29P28-201ENST00000446439 141 ntBASIC1.75□□□□□ -2.13
TRAIPQ9BWF2 AC108729.3-201ENST00000513484 108 ntBASIC1.75□□□□□ -2.13
TRAIPQ9BWF2 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.75□□□□□ -2.13
TRAIPQ9BWF2 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC1.74□□□□□ -2.13
TRAIPQ9BWF2 MIR30D-201ENST00000362283 70 ntBASIC1.74□□□□□ -2.13
TRAIPQ9BWF2 SNORD114-24-201ENST00000365029 72 ntBASIC1.74□□□□□ -2.13
TRAIPQ9BWF2 RPS26P5-201ENST00000418544 335 ntBASIC1.74□□□□□ -2.13
TRAIPQ9BWF2 RNU6-1053P-201ENST00000515930 101 ntBASIC1.74□□□□□ -2.13
TRAIPQ9BWF2 AL512598.1-201ENST00000610158 273 ntBASIC1.74□□□□□ -2.13
TRAIPQ9BWF2 RNU1-124P-201ENST00000363861 145 ntBASIC1.73□□□□□ -2.13
TRAIPQ9BWF2 RNU6-60P-201ENST00000364792 103 ntBASIC1.73□□□□□ -2.13
TRAIPQ9BWF2 RNY1P13-201ENST00000365030 105 ntBASIC1.73□□□□□ -2.13
TRAIPQ9BWF2 RNA5SP363-201ENST00000365072 115 ntBASIC1.73□□□□□ -2.13
TRAIPQ9BWF2 MIR517C-201ENST00000385103 95 ntBASIC1.73□□□□□ -2.13
TRAIPQ9BWF2 SNORD53B-201ENST00000577887 78 ntBASIC1.73□□□□□ -2.13
TRAIPQ9BWF2 AL589743.1-201ENST00000551932 2712 ntBASIC1.72□□□□□ -2.13
TRAIPQ9BWF2 MIR548D2-201ENST00000384955 97 ntBASIC1.72□□□□□ -2.13
TRAIPQ9BWF2 RNU7-95P-201ENST00000459222 64 ntBASIC1.72□□□□□ -2.13
TRAIPQ9BWF2 Y_RNA.676-201ENST00000516393 96 ntBASIC1.72□□□□□ -2.13
TRAIPQ9BWF2 RNU6-977P-201ENST00000516411 103 ntBASIC1.72□□□□□ -2.13
TRAIPQ9BWF2 MTND5P34-201ENST00000568888 325 ntBASIC1.72□□□□□ -2.13
TRAIPQ9BWF2 Y_RNA.4-201ENST00000362333 112 ntBASIC1.71□□□□□ -2.14
TRAIPQ9BWF2 SNORD114-10-201ENST00000363409 72 ntBASIC1.71□□□□□ -2.14
TRAIPQ9BWF2 RNA5SP205-201ENST00000364653 136 ntBASIC1.71□□□□□ -2.14
TRAIPQ9BWF2 SNORA22C-201ENST00000384614 134 ntBASIC1.71□□□□□ -2.14
TRAIPQ9BWF2 Y_RNA.563-201ENST00000384707 108 ntBASIC1.71□□□□□ -2.14
TRAIPQ9BWF2 SNORD33.1-201ENST00000516213 88 ntBASIC1.71□□□□□ -2.14
TRAIPQ9BWF2 AC133485.1-201ENST00000567176 124 ntBASIC1.71□□□□□ -2.14
TRAIPQ9BWF2 AL645939.4-201ENST00000604495 135 ntBASIC1.71□□□□□ -2.14
TRAIPQ9BWF2 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.71□□□□□ -2.14
TRAIPQ9BWF2 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.7□□□□□ -2.14
TRAIPQ9BWF2 MIR150-201ENST00000385048 84 ntBASIC1.7□□□□□ -2.14
TRAIPQ9BWF2 RNU6-321P-201ENST00000410912 106 ntBASIC1.7□□□□□ -2.14
TRAIPQ9BWF2 RNU7-185P-201ENST00000459215 60 ntBASIC1.7□□□□□ -2.14
TRAIPQ9BWF2 snoU13.21-201ENST00000459368 105 ntBASIC1.7□□□□□ -2.14
TRAIPQ9BWF2 SNORD67.1-201ENST00000516618 108 ntBASIC1.7□□□□□ -2.14
TRAIPQ9BWF2 BX248123.2-201ENST00000606318 124 ntBASIC1.7□□□□□ -2.14
TRAIPQ9BWF2 RNU6-447P-201ENST00000410293 104 ntBASIC1.69□□□□□ -2.14
TRAIPQ9BWF2 RNU6-1118P-201ENST00000410382 104 ntBASIC1.69□□□□□ -2.14
TRAIPQ9BWF2 RNU6-1076P-201ENST00000410397 104 ntBASIC1.69□□□□□ -2.14
TRAIPQ9BWF2 RNU6-355P-201ENST00000410427 104 ntBASIC1.69□□□□□ -2.14
TRAIPQ9BWF2 RNU6-791P-201ENST00000410467 104 ntBASIC1.69□□□□□ -2.14
TRAIPQ9BWF2 RNU6-705P-201ENST00000410601 104 ntBASIC1.69□□□□□ -2.14
TRAIPQ9BWF2 RNU6-1100P-201ENST00000410691 104 ntBASIC1.69□□□□□ -2.14
TRAIPQ9BWF2 RNU6-860P-201ENST00000410860 104 ntBASIC1.69□□□□□ -2.14
TRAIPQ9BWF2 RNU6-1217P-201ENST00000411276 104 ntBASIC1.69□□□□□ -2.14
TRAIPQ9BWF2 RNU6-785P-201ENST00000411324 104 ntBASIC1.69□□□□□ -2.14
TRAIPQ9BWF2 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC1.69□□□□□ -2.14
TRAIPQ9BWF2 AL359821.1-201ENST00000605519 182 ntBASIC1.69□□□□□ -2.14
TRAIPQ9BWF2 uc_338.6-201ENST00000613544 171 ntBASIC1.69□□□□□ -2.14
TRAIPQ9BWF2 U6.90-201ENST00000614007 104 ntBASIC1.69□□□□□ -2.14
TRAIPQ9BWF2 U6.70-201ENST00000620287 104 ntBASIC1.69□□□□□ -2.14
TRAIPQ9BWF2 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.69□□□□□ -2.14
TRAIPQ9BWF2 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC1.68□□□□□ -2.14
TRAIPQ9BWF2 RNU1-42P-201ENST00000364033 160 ntBASIC1.68□□□□□ -2.14
TRAIPQ9BWF2 RNU6-364P-201ENST00000384387 107 ntBASIC1.68□□□□□ -2.14
TRAIPQ9BWF2 MIR548A1-201ENST00000385041 97 ntBASIC1.68□□□□□ -2.14
TRAIPQ9BWF2 SNORD89-201ENST00000390981 114 ntBASIC1.68□□□□□ -2.14
TRAIPQ9BWF2 SNORD124-201ENST00000459577 104 ntBASIC1.68□□□□□ -2.14
TRAIPQ9BWF2 AC007012.1-201ENST00000567192 175 ntBASIC1.68□□□□□ -2.14
TRAIPQ9BWF2 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.67□□□□□ -2.14
TRAIPQ9BWF2 RNU6-53P-201ENST00000365367 106 ntBASIC1.67□□□□□ -2.14
TRAIPQ9BWF2 RNU6-1056P-201ENST00000383996 107 ntBASIC1.67□□□□□ -2.14
TRAIPQ9BWF2 RNU6-616P-201ENST00000384353 107 ntBASIC1.67□□□□□ -2.14
TRAIPQ9BWF2 Y_RNA.507-201ENST00000384500 99 ntBASIC1.67□□□□□ -2.14
TRAIPQ9BWF2 SNORA67.6-201ENST00000391093 99 ntBASIC1.67□□□□□ -2.14
TRAIPQ9BWF2 RNU6-955P-201ENST00000410497 104 ntBASIC1.67□□□□□ -2.14
TRAIPQ9BWF2 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC1.67□□□□□ -2.14
TRAIPQ9BWF2 U7.7-201ENST00000459276 60 ntBASIC1.67□□□□□ -2.14
TRAIPQ9BWF2 RNU6-1110P-201ENST00000516462 101 ntBASIC1.67□□□□□ -2.14
TRAIPQ9BWF2 RNU6-834P-201ENST00000362367 110 ntBASIC1.66□□□□□ -2.14
TRAIPQ9BWF2 MT-TI-201ENST00000387365 69 ntBASIC1.66□□□□□ -2.14
TRAIPQ9BWF2 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.66□□□□□ -2.14
TRAIPQ9BWF2 RNU7-137P-201ENST00000516788 62 ntBASIC1.66□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 189.9 ms