Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 RNU6-971P-201ENST00000516920 106 ntBASIC0.98□□□□□ -2.25
CCDC28AQ8IWP9 AC022523.2-201ENST00000561045 150 ntBASIC0.98□□□□□ -2.25
CCDC28AQ8IWP9 MIR4804-201ENST00000581683 73 ntBASIC0.98□□□□□ -2.25
CCDC28AQ8IWP9 Y_RNA.213-201ENST00000364178 111 ntBASIC0.97□□□□□ -2.25
CCDC28AQ8IWP9 RNU6-1187P-201ENST00000364771 110 ntBASIC0.97□□□□□ -2.25
CCDC28AQ8IWP9 RNU1-36P-201ENST00000365130 165 ntBASIC0.97□□□□□ -2.25
CCDC28AQ8IWP9 MIR938-201ENST00000401216 83 ntBASIC0.97□□□□□ -2.25
CCDC28AQ8IWP9 MIR1263-201ENST00000408324 86 ntBASIC0.97□□□□□ -2.25
CCDC28AQ8IWP9 RNU1-123P-201ENST00000458950 160 ntBASIC0.97□□□□□ -2.25
CCDC28AQ8IWP9 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.97□□□□□ -2.25
CCDC28AQ8IWP9 RNU6-1061P-201ENST00000516530 99 ntBASIC0.97□□□□□ -2.25
CCDC28AQ8IWP9 AC015712.3-201ENST00000559380 164 ntBASIC0.97□□□□□ -2.25
CCDC28AQ8IWP9 RMST_2.1-201ENST00000617263 136 ntBASIC0.97□□□□□ -2.25
CCDC28AQ8IWP9 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.97□□□□□ -2.25
CCDC28AQ8IWP9 RNU6-364P-201ENST00000384387 107 ntBASIC0.96□□□□□ -2.26
CCDC28AQ8IWP9 RNU6-1104P-201ENST00000384723 104 ntBASIC0.96□□□□□ -2.26
CCDC28AQ8IWP9 MIR759-201ENST00000390224 91 ntBASIC0.96□□□□□ -2.26
CCDC28AQ8IWP9 U8.15-201ENST00000390947 134 ntBASIC0.96□□□□□ -2.26
CCDC28AQ8IWP9 AL603908.1-201ENST00000406098 201 ntBASIC0.96□□□□□ -2.26
CCDC28AQ8IWP9 COX6CP6-201ENST00000490840 228 ntBASIC0.96□□□□□ -2.26
CCDC28AQ8IWP9 AC104984.5-201ENST00000586878 94 ntBASIC0.96□□□□□ -2.26
CCDC28AQ8IWP9 Y_RNA.198-201ENST00000364013 98 ntBASIC0.95□□□□□ -2.26
CCDC28AQ8IWP9 RNU6-1335P-201ENST00000365426 107 ntBASIC0.95□□□□□ -2.26
CCDC28AQ8IWP9 RPL39P28-201ENST00000465655 155 ntBASIC0.95□□□□□ -2.26
CCDC28AQ8IWP9 RNU6-781P-201ENST00000516377 101 ntBASIC0.95□□□□□ -2.26
CCDC28AQ8IWP9 MIR3163-201ENST00000581592 73 ntBASIC0.95□□□□□ -2.26
CCDC28AQ8IWP9 SNORD58C-201ENST00000365223 64 ntBASIC0.94□□□□□ -2.26
CCDC28AQ8IWP9 RNU1-119P-201ENST00000391122 165 ntBASIC0.94□□□□□ -2.26
CCDC28AQ8IWP9 RNU6-447P-201ENST00000410293 104 ntBASIC0.94□□□□□ -2.26
CCDC28AQ8IWP9 RNU6-1118P-201ENST00000410382 104 ntBASIC0.94□□□□□ -2.26
CCDC28AQ8IWP9 RNU6-1076P-201ENST00000410397 104 ntBASIC0.94□□□□□ -2.26
CCDC28AQ8IWP9 RNU6-355P-201ENST00000410427 104 ntBASIC0.94□□□□□ -2.26
CCDC28AQ8IWP9 RNU6-791P-201ENST00000410467 104 ntBASIC0.94□□□□□ -2.26
CCDC28AQ8IWP9 RNU6-705P-201ENST00000410601 104 ntBASIC0.94□□□□□ -2.26
CCDC28AQ8IWP9 RNU6-1100P-201ENST00000410691 104 ntBASIC0.94□□□□□ -2.26
CCDC28AQ8IWP9 RNU6-860P-201ENST00000410860 104 ntBASIC0.94□□□□□ -2.26
CCDC28AQ8IWP9 RNU4-83P-201ENST00000410863 133 ntBASIC0.94□□□□□ -2.26
CCDC28AQ8IWP9 RNU6-1217P-201ENST00000411276 104 ntBASIC0.94□□□□□ -2.26
CCDC28AQ8IWP9 RNU6-785P-201ENST00000411324 104 ntBASIC0.94□□□□□ -2.26
CCDC28AQ8IWP9 TMSB4XP3-201ENST00000445144 114 ntBASIC0.94□□□□□ -2.26
CCDC28AQ8IWP9 AC004223.1-201ENST00000479840 271 ntBASIC0.94□□□□□ -2.26
CCDC28AQ8IWP9 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC0.94□□□□□ -2.26
CCDC28AQ8IWP9 RNU7-156P-201ENST00000517214 74 ntBASIC0.94□□□□□ -2.26
CCDC28AQ8IWP9 MIR4303-201ENST00000581299 66 ntBASIC0.94□□□□□ -2.26
CCDC28AQ8IWP9 SNORD92-201ENST00000585078 85 ntBASIC0.94□□□□□ -2.26
CCDC28AQ8IWP9 MIR4295-201ENST00000585286 85 ntBASIC0.94□□□□□ -2.26
CCDC28AQ8IWP9 U6.90-201ENST00000614007 104 ntBASIC0.94□□□□□ -2.26
CCDC28AQ8IWP9 U6.70-201ENST00000620287 104 ntBASIC0.94□□□□□ -2.26
CCDC28AQ8IWP9 SNORD114-10-201ENST00000363409 72 ntBASIC0.93□□□□□ -2.26
CCDC28AQ8IWP9 SNORA7.1-201ENST00000363750 139 ntBASIC0.93□□□□□ -2.26
CCDC28AQ8IWP9 RNU6-80P-201ENST00000384195 107 ntBASIC0.93□□□□□ -2.26
CCDC28AQ8IWP9 Y_RNA.528-201ENST00000384575 108 ntBASIC0.93□□□□□ -2.26
CCDC28AQ8IWP9 MIR520H-201ENST00000385126 88 ntBASIC0.93□□□□□ -2.26
CCDC28AQ8IWP9 RNU7-56P-201ENST00000458744 62 ntBASIC0.93□□□□□ -2.26
CCDC28AQ8IWP9 MIR1270-201ENST00000459320 83 ntBASIC0.93□□□□□ -2.26
CCDC28AQ8IWP9 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC0.93□□□□□ -2.26
CCDC28AQ8IWP9 RNU6-772P-201ENST00000516042 105 ntBASIC0.93□□□□□ -2.26
CCDC28AQ8IWP9 RNU7-137P-201ENST00000516788 62 ntBASIC0.93□□□□□ -2.26
CCDC28AQ8IWP9 MIR4421-201ENST00000578133 69 ntBASIC0.93□□□□□ -2.26
CCDC28AQ8IWP9 MIR4524B-201ENST00000581569 115 ntBASIC0.93□□□□□ -2.26
CCDC28AQ8IWP9 MIR3660-201ENST00000584845 100 ntBASIC0.93□□□□□ -2.26
CCDC28AQ8IWP9 AC025166.1-201ENST00000612411 163 ntBASIC0.93□□□□□ -2.26
CCDC28AQ8IWP9 MIR6715A-201ENST00000615929 79 ntBASIC0.93□□□□□ -2.26
CCDC28AQ8IWP9 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.93□□□□□ -2.26
CCDC28AQ8IWP9 AL589743.1-201ENST00000551932 2712 ntBASIC0.93□□□□□ -2.26
CCDC28AQ8IWP9 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.92□□□□□ -2.26
CCDC28AQ8IWP9 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.92□□□□□ -2.26
CCDC28AQ8IWP9 MIRLET7F2-201ENST00000385277 83 ntBASIC0.92□□□□□ -2.26
CCDC28AQ8IWP9 SNORA40.6-201ENST00000391153 128 ntBASIC0.92□□□□□ -2.26
CCDC28AQ8IWP9 5S_rRNA.2-201ENST00000391293 112 ntBASIC0.92□□□□□ -2.26
CCDC28AQ8IWP9 SNORD99-201ENST00000408612 74 ntBASIC0.92□□□□□ -2.26
CCDC28AQ8IWP9 SNORD67.1-201ENST00000516618 108 ntBASIC0.92□□□□□ -2.26
CCDC28AQ8IWP9 FAM71BP1-201ENST00000604431 523 ntBASIC0.92□□□□□ -2.26
CCDC28AQ8IWP9 AL353765.1-201ENST00000605514 183 ntBASIC0.92□□□□□ -2.26
CCDC28AQ8IWP9 AL157834.3-201ENST00000615543 103 ntBASIC0.92□□□□□ -2.26
CCDC28AQ8IWP9 MIR608-201ENST00000384820 100 ntBASIC0.91□□□□□ -2.26
CCDC28AQ8IWP9 RNU6-482P-201ENST00000391068 107 ntBASIC0.91□□□□□ -2.26
CCDC28AQ8IWP9 AC096949.1-201ENST00000412047 152 ntBASIC0.91□□□□□ -2.26
CCDC28AQ8IWP9 BTF3P4-201ENST00000418852 495 ntBASIC0.91□□□□□ -2.26
CCDC28AQ8IWP9 RNU7-102P-201ENST00000458948 62 ntBASIC0.91□□□□□ -2.26
CCDC28AQ8IWP9 RNU7-6P-201ENST00000516845 62 ntBASIC0.91□□□□□ -2.26
CCDC28AQ8IWP9 MIR6078-201ENST00000611069 100 ntBASIC0.91□□□□□ -2.26
CCDC28AQ8IWP9 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC0.91□□□□□ -2.26
CCDC28AQ8IWP9 RNU6-403P-201ENST00000363163 104 ntBASIC0.9□□□□□ -2.27
CCDC28AQ8IWP9 Y_RNA.140-201ENST00000363474 103 ntBASIC0.9□□□□□ -2.27
CCDC28AQ8IWP9 Y_RNA.346-201ENST00000365385 112 ntBASIC0.9□□□□□ -2.27
CCDC28AQ8IWP9 MIR764-201ENST00000390811 85 ntBASIC0.9□□□□□ -2.27
CCDC28AQ8IWP9 Y_RNA.588-201ENST00000391254 102 ntBASIC0.9□□□□□ -2.27
CCDC28AQ8IWP9 AC133485.1-201ENST00000567176 124 ntBASIC0.9□□□□□ -2.27
CCDC28AQ8IWP9 MIR4491-201ENST00000581087 68 ntBASIC0.9□□□□□ -2.27
CCDC28AQ8IWP9 AL359881.1-201ENST00000602916 267 ntBASIC0.9□□□□□ -2.27
CCDC28AQ8IWP9 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC0.9□□□□□ -2.27
CCDC28AQ8IWP9 AL353770.2-201ENST00000620024 78 ntBASIC0.9□□□□□ -2.27
CCDC28AQ8IWP9 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC0.89□□□□□ -2.27
CCDC28AQ8IWP9 MIR378A-201ENST00000362177 66 ntBASIC0.89□□□□□ -2.27
CCDC28AQ8IWP9 RNU6-53P-201ENST00000365367 106 ntBASIC0.89□□□□□ -2.27
CCDC28AQ8IWP9 RNU4-62P-201ENST00000410125 130 ntBASIC0.89□□□□□ -2.27
CCDC28AQ8IWP9 RNU7-107P-201ENST00000459121 61 ntBASIC0.89□□□□□ -2.27
CCDC28AQ8IWP9 ACA64.5-201ENST00000516207 127 ntBASIC0.89□□□□□ -2.27
CCDC28AQ8IWP9 RNU6-1234P-201ENST00000516877 103 ntBASIC0.89□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 192.7 ms