Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 RNU6-1100P-201ENST00000410691 104 ntBASIC0.44□□□□□ -2.34
PTPN4P29074 RNU6-860P-201ENST00000410860 104 ntBASIC0.44□□□□□ -2.34
PTPN4P29074 RNU6-1217P-201ENST00000411276 104 ntBASIC0.44□□□□□ -2.34
PTPN4P29074 RNU6-785P-201ENST00000411324 104 ntBASIC0.44□□□□□ -2.34
PTPN4P29074 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC0.44□□□□□ -2.34
PTPN4P29074 U6.90-201ENST00000614007 104 ntBASIC0.44□□□□□ -2.34
PTPN4P29074 U6.70-201ENST00000620287 104 ntBASIC0.44□□□□□ -2.34
PTPN4P29074 SNORA22.1-201ENST00000362701 134 ntBASIC0.43□□□□□ -2.34
PTPN4P29074 SNORD18A-201ENST00000363753 72 ntBASIC0.43□□□□□ -2.34
PTPN4P29074 RNU6-47P-201ENST00000383866 107 ntBASIC0.43□□□□□ -2.34
PTPN4P29074 SNORD100-201ENST00000408573 76 ntBASIC0.43□□□□□ -2.34
PTPN4P29074 RNA5SP237-201ENST00000410414 113 ntBASIC0.43□□□□□ -2.34
PTPN4P29074 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.43□□□□□ -2.34
PTPN4P29074 MTND5P32-201ENST00000560711 1802 ntBASIC0.43□□□□□ -2.34
PTPN4P29074 Y_RNA.83-201ENST00000363005 113 ntBASIC0.42□□□□□ -2.34
PTPN4P29074 Y_RNA.144-201ENST00000363521 113 ntBASIC0.42□□□□□ -2.34
PTPN4P29074 RNA5SP457-201ENST00000363657 124 ntBASIC0.42□□□□□ -2.34
PTPN4P29074 RNU6-1336P-201ENST00000383886 109 ntBASIC0.42□□□□□ -2.34
PTPN4P29074 RNU6ATAC42P-201ENST00000408637 95 ntBASIC0.42□□□□□ -2.34
PTPN4P29074 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC0.42□□□□□ -2.34
PTPN4P29074 MIR4431-201ENST00000579990 94 ntBASIC0.42□□□□□ -2.34
PTPN4P29074 AC009779.6-201ENST00000603972 165 ntBASIC0.42□□□□□ -2.34
PTPN4P29074 AC090625.1-201ENST00000357130 210 ntBASIC0.41□□□□□ -2.34
PTPN4P29074 RNU6-1020P-201ENST00000363684 107 ntBASIC0.41□□□□□ -2.34
PTPN4P29074 RNU4-16P-201ENST00000364737 141 ntBASIC0.41□□□□□ -2.34
PTPN4P29074 VTRNA1-3-201ENST00000365645 89 ntBASIC0.41□□□□□ -2.34
PTPN4P29074 Y_RNA.521-201ENST00000384560 114 ntBASIC0.41□□□□□ -2.34
PTPN4P29074 SNORD93-201ENST00000408813 74 ntBASIC0.41□□□□□ -2.34
PTPN4P29074 AC002350.1-201ENST00000490759 375 ntBASIC0.41□□□□□ -2.34
PTPN4P29074 AC141846.1-201ENST00000568348 142 ntBASIC0.41□□□□□ -2.34
PTPN4P29074 AL162730.1-201ENST00000605734 292 ntBASIC0.41□□□□□ -2.34
PTPN4P29074 MIR8066-201ENST00000617280 78 ntBASIC0.41□□□□□ -2.34
PTPN4P29074 Y_RNA.42-201ENST00000362660 108 ntBASIC0.4□□□□□ -2.35
PTPN4P29074 Y_RNA.52-201ENST00000362760 96 ntBASIC0.4□□□□□ -2.35
PTPN4P29074 RNU4-83P-201ENST00000410863 133 ntBASIC0.4□□□□□ -2.35
PTPN4P29074 AC130289.1-201ENST00000577321 73 ntBASIC0.4□□□□□ -2.35
PTPN4P29074 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC0.4□□□□□ -2.35
PTPN4P29074 uc_338.16-201ENST00000621804 95 ntBASIC0.4□□□□□ -2.35
PTPN4P29074 MIR330-201ENST00000362196 94 ntBASIC0.39□□□□□ -2.35
PTPN4P29074 RNY1P6-201ENST00000384193 109 ntBASIC0.39□□□□□ -2.35
PTPN4P29074 SNORA50A-201ENST00000384225 134 ntBASIC0.39□□□□□ -2.35
PTPN4P29074 Y_RNA.515-201ENST00000384535 112 ntBASIC0.39□□□□□ -2.35
PTPN4P29074 RNU6-768P-201ENST00000384683 107 ntBASIC0.39□□□□□ -2.35
PTPN4P29074 U8.15-201ENST00000390947 134 ntBASIC0.39□□□□□ -2.35
PTPN4P29074 RPL39P25-201ENST00000449384 154 ntBASIC0.39□□□□□ -2.35
PTPN4P29074 RNU6-893P-201ENST00000458841 100 ntBASIC0.39□□□□□ -2.35
PTPN4P29074 RNU6-1258P-201ENST00000516911 111 ntBASIC0.39□□□□□ -2.35
PTPN4P29074 RNU6-448P-201ENST00000517052 107 ntBASIC0.39□□□□□ -2.35
PTPN4P29074 Y_RNA.757-201ENST00000578934 114 ntBASIC0.39□□□□□ -2.35
PTPN4P29074 RNU6-1082P-201ENST00000364574 107 ntBASIC0.38□□□□□ -2.35
PTPN4P29074 RNU6-312P-201ENST00000364629 107 ntBASIC0.38□□□□□ -2.35
PTPN4P29074 RNU6-949P-201ENST00000384040 107 ntBASIC0.38□□□□□ -2.35
PTPN4P29074 SNORA18-201ENST00000384416 132 ntBASIC0.38□□□□□ -2.35
PTPN4P29074 AC096949.1-201ENST00000412047 152 ntBASIC0.38□□□□□ -2.35
PTPN4P29074 AC107027.2-201ENST00000512197 115 ntBASIC0.38□□□□□ -2.35
PTPN4P29074 RNU6-1219P-201ENST00000516143 112 ntBASIC0.38□□□□□ -2.35
PTPN4P29074 RNA5SP236-201ENST00000516169 116 ntBASIC0.38□□□□□ -2.35
PTPN4P29074 RNA5SP330-201ENST00000517096 96 ntBASIC0.38□□□□□ -2.35
PTPN4P29074 MIR8087-201ENST00000612745 78 ntBASIC0.38□□□□□ -2.35
PTPN4P29074 RNU6-349P-201ENST00000362402 107 ntBASIC0.37□□□□□ -2.35
PTPN4P29074 Y_RNA.85-201ENST00000363014 111 ntBASIC0.37□□□□□ -2.35
PTPN4P29074 Y_RNA.171-201ENST00000363760 102 ntBASIC0.37□□□□□ -2.35
PTPN4P29074 Y_RNA.233-201ENST00000364407 101 ntBASIC0.37□□□□□ -2.35
PTPN4P29074 Y_RNA.258-201ENST00000364613 105 ntBASIC0.37□□□□□ -2.35
PTPN4P29074 Y_RNA.274-201ENST00000364714 101 ntBASIC0.37□□□□□ -2.35
PTPN4P29074 Y_RNA.489-201ENST00000384410 101 ntBASIC0.37□□□□□ -2.35
PTPN4P29074 Y_RNA.588-201ENST00000391254 102 ntBASIC0.37□□□□□ -2.35
PTPN4P29074 AL078595.1-201ENST00000404458 226 ntBASIC0.37□□□□□ -2.35
PTPN4P29074 RNA5SP144-201ENST00000410846 116 ntBASIC0.37□□□□□ -2.35
PTPN4P29074 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.37□□□□□ -2.35
PTPN4P29074 SNORA68.3-201ENST00000515906 83 ntBASIC0.37□□□□□ -2.35
PTPN4P29074 AC022559.1-201ENST00000520905 205 ntBASIC0.37□□□□□ -2.35
PTPN4P29074 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC0.37□□□□□ -2.35
PTPN4P29074 Y_RNA.13-201ENST00000362403 112 ntBASIC0.36□□□□□ -2.35
PTPN4P29074 RNY1P13-201ENST00000365030 105 ntBASIC0.36□□□□□ -2.35
PTPN4P29074 RNA5SP117-201ENST00000365294 118 ntBASIC0.36□□□□□ -2.35
PTPN4P29074 RNU6-679P-201ENST00000391003 106 ntBASIC0.36□□□□□ -2.35
PTPN4P29074 Y_RNA.617-201ENST00000410920 90 ntBASIC0.36□□□□□ -2.35
PTPN4P29074 RNU5E-9P-201ENST00000411164 104 ntBASIC0.36□□□□□ -2.35
PTPN4P29074 SNORD71-201ENST00000411292 86 ntBASIC0.36□□□□□ -2.35
PTPN4P29074 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.36□□□□□ -2.35
PTPN4P29074 RNA5SP94-201ENST00000516917 108 ntBASIC0.36□□□□□ -2.35
PTPN4P29074 AP003327.1-201ENST00000529684 127 ntBASIC0.36□□□□□ -2.35
PTPN4P29074 AC092634.7-201ENST00000621022 103 ntBASIC0.36□□□□□ -2.35
PTPN4P29074 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.36□□□□□ -2.35
PTPN4P29074 RNU6-403P-201ENST00000363163 104 ntBASIC0.35□□□□□ -2.35
PTPN4P29074 Y_RNA.115-201ENST00000363272 98 ntBASIC0.35□□□□□ -2.35
PTPN4P29074 RNA5SP517-201ENST00000364724 117 ntBASIC0.35□□□□□ -2.35
PTPN4P29074 Y_RNA.337-201ENST00000365312 102 ntBASIC0.35□□□□□ -2.35
PTPN4P29074 RNU6-1086P-201ENST00000410930 100 ntBASIC0.35□□□□□ -2.35
PTPN4P29074 MIR3678-201ENST00000578455 94 ntBASIC0.35□□□□□ -2.35
PTPN4P29074 MIR4491-201ENST00000581087 68 ntBASIC0.35□□□□□ -2.35
PTPN4P29074 MIR6082-201ENST00000613604 109 ntBASIC0.35□□□□□ -2.35
PTPN4P29074 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.35□□□□□ -2.35
PTPN4P29074 RNU6-818P-201ENST00000364837 108 ntBASIC0.34□□□□□ -2.36
PTPN4P29074 SNORA75.5-201ENST00000391291 81 ntBASIC0.34□□□□□ -2.36
PTPN4P29074 Y_RNA.644-201ENST00000459006 113 ntBASIC0.34□□□□□ -2.36
PTPN4P29074 Y_RNA.674-201ENST00000516362 113 ntBASIC0.34□□□□□ -2.36
PTPN4P29074 RNU6-765P-201ENST00000516916 99 ntBASIC0.34□□□□□ -2.36
PTPN4P29074 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC0.34□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 232.8 ms