Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 Y_RNA.294-201ENST00000364916 102 ntBASIC0.85□□□□□ -2.27
MSH3P20585 RNU6-1237P-201ENST00000384777 107 ntBASIC0.85□□□□□ -2.27
MSH3P20585 SNORA40-201ENST00000388090 126 ntBASIC0.85□□□□□ -2.27
MSH3P20585 MIR942-201ENST00000401111 86 ntBASIC0.85□□□□□ -2.27
MSH3P20585 RPS26P5-201ENST00000418544 335 ntBASIC0.85□□□□□ -2.27
MSH3P20585 AC004812.1-201ENST00000540773 146 ntBASIC0.85□□□□□ -2.27
MSH3P20585 MIR6504-201ENST00000613520 61 ntBASIC0.85□□□□□ -2.27
MSH3P20585 AL662814.1-201ENST00000617364 121 ntBASIC0.85□□□□□ -2.27
MSH3P20585 TUG1_4.1-201ENST00000619464 181 ntBASIC0.85□□□□□ -2.27
MSH3P20585 RNU1-93P-201ENST00000364704 169 ntBASIC0.84□□□□□ -2.27
MSH3P20585 Y_RNA.298-201ENST00000364960 107 ntBASIC0.84□□□□□ -2.27
MSH3P20585 SNORD50.2-201ENST00000365465 70 ntBASIC0.84□□□□□ -2.27
MSH3P20585 SNORA18-201ENST00000384416 132 ntBASIC0.84□□□□□ -2.27
MSH3P20585 RNU6-342P-201ENST00000384521 104 ntBASIC0.84□□□□□ -2.27
MSH3P20585 MIR1827-201ENST00000408549 66 ntBASIC0.84□□□□□ -2.27
MSH3P20585 RNA5SP237-201ENST00000410414 113 ntBASIC0.84□□□□□ -2.27
MSH3P20585 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.84□□□□□ -2.27
MSH3P20585 AL158147.1-201ENST00000443970 75 ntBASIC0.84□□□□□ -2.27
MSH3P20585 AC067940.1-201ENST00000458411 300 ntBASIC0.84□□□□□ -2.27
MSH3P20585 U7.7-201ENST00000459276 60 ntBASIC0.84□□□□□ -2.27
MSH3P20585 RNU7-123P-201ENST00000515911 60 ntBASIC0.84□□□□□ -2.27
MSH3P20585 AC141846.1-201ENST00000568348 142 ntBASIC0.84□□□□□ -2.27
MSH3P20585 MIR3973-201ENST00000579824 107 ntBASIC0.84□□□□□ -2.27
MSH3P20585 FAM71BP1-201ENST00000604431 523 ntBASIC0.84□□□□□ -2.27
MSH3P20585 AC211469.2-201ENST00000605461 205 ntBASIC0.84□□□□□ -2.27
MSH3P20585 SNORD114-2-201ENST00000363953 78 ntBASIC0.83□□□□□ -2.28
MSH3P20585 RNU6-647P-201ENST00000364243 107 ntBASIC0.83□□□□□ -2.28
MSH3P20585 RNU1-36P-201ENST00000365130 165 ntBASIC0.83□□□□□ -2.28
MSH3P20585 MIR499A-201ENST00000384903 122 ntBASIC0.83□□□□□ -2.28
MSH3P20585 MT-TF-201ENST00000387314 71 ntBASIC0.83□□□□□ -2.28
MSH3P20585 RNU6ATAC42P-201ENST00000408637 95 ntBASIC0.83□□□□□ -2.28
MSH3P20585 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.83□□□□□ -2.28
MSH3P20585 PDCD5P2-201ENST00000507570 312 ntBASIC0.83□□□□□ -2.28
MSH3P20585 RN7SKP19-201ENST00000516016 252 ntBASIC0.83□□□□□ -2.28
MSH3P20585 RNU6-351P-201ENST00000516097 100 ntBASIC0.83□□□□□ -2.28
MSH3P20585 RNA5SP255-201ENST00000516370 107 ntBASIC0.83□□□□□ -2.28
MSH3P20585 RNU6-1110P-201ENST00000516462 101 ntBASIC0.83□□□□□ -2.28
MSH3P20585 RNA5SP33-201ENST00000516687 98 ntBASIC0.83□□□□□ -2.28
MSH3P20585 IGKV1-22-201ENST00000524313 326 ntBASIC0.83□□□□□ -2.28
MSH3P20585 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.83□□□□□ -2.28
MSH3P20585 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC0.82□□□□□ -2.28
MSH3P20585 MIR1-1-201ENST00000362147 71 ntBASIC0.82□□□□□ -2.28
MSH3P20585 Y_RNA.191-201ENST00000363972 113 ntBASIC0.82□□□□□ -2.28
MSH3P20585 SNORD114-22-201ENST00000365423 72 ntBASIC0.82□□□□□ -2.28
MSH3P20585 MIR613-201ENST00000385248 95 ntBASIC0.82□□□□□ -2.28
MSH3P20585 SNORD89-201ENST00000390981 114 ntBASIC0.82□□□□□ -2.28
MSH3P20585 Y_RNA.586-201ENST00000391146 98 ntBASIC0.82□□□□□ -2.28
MSH3P20585 RNU6-1086P-201ENST00000410930 100 ntBASIC0.82□□□□□ -2.28
MSH3P20585 AC015818.7-201ENST00000428754 109 ntBASIC0.82□□□□□ -2.28
MSH3P20585 AC087499.7-201ENST00000441958 109 ntBASIC0.82□□□□□ -2.28
MSH3P20585 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC0.82□□□□□ -2.28
MSH3P20585 RNU7-35P-201ENST00000517174 62 ntBASIC0.82□□□□□ -2.28
MSH3P20585 MIR4771-2-201ENST00000577758 74 ntBASIC0.82□□□□□ -2.28
MSH3P20585 MIR4771-1-201ENST00000582617 74 ntBASIC0.82□□□□□ -2.28
MSH3P20585 AC013244.2-201ENST00000603396 103 ntBASIC0.82□□□□□ -2.28
MSH3P20585 AC020891.4-201ENST00000605745 93 ntBASIC0.82□□□□□ -2.28
MSH3P20585 RNU6-187P-201ENST00000384139 106 ntBASIC0.81□□□□□ -2.28
MSH3P20585 MIR548M-201ENST00000408260 86 ntBASIC0.81□□□□□ -2.28
MSH3P20585 Y_RNA.617-201ENST00000410920 90 ntBASIC0.81□□□□□ -2.28
MSH3P20585 ACA64.5-201ENST00000516207 127 ntBASIC0.81□□□□□ -2.28
MSH3P20585 RNY4P20-201ENST00000516678 93 ntBASIC0.81□□□□□ -2.28
MSH3P20585 IGHVII-40-1-201ENST00000517316 58 ntBASIC0.81□□□□□ -2.28
MSH3P20585 MIR548AE2-201ENST00000583456 67 ntBASIC0.81□□□□□ -2.28
MSH3P20585 SNORA4-201ENST00000584302 138 ntBASIC0.81□□□□□ -2.28
MSH3P20585 AL136317.1-201ENST00000612653 226 ntBASIC0.81□□□□□ -2.28
MSH3P20585 AC023934.1-201ENST00000574529 2389 ntBASIC0.81□□□□□ -2.28
MSH3P20585 MIR373-201ENST00000362273 69 ntBASIC0.8□□□□□ -2.28
MSH3P20585 RNY1P13-201ENST00000365030 105 ntBASIC0.8□□□□□ -2.28
MSH3P20585 RNU6-1104P-201ENST00000384723 104 ntBASIC0.8□□□□□ -2.28
MSH3P20585 MIR146A-201ENST00000385201 99 ntBASIC0.8□□□□□ -2.28
MSH3P20585 MIR100-201ENST00000385259 80 ntBASIC0.8□□□□□ -2.28
MSH3P20585 RNU7-185P-201ENST00000459215 60 ntBASIC0.8□□□□□ -2.28
MSH3P20585 RNU7-79P-201ENST00000516082 62 ntBASIC0.8□□□□□ -2.28
MSH3P20585 MIR4676-201ENST00000583078 72 ntBASIC0.8□□□□□ -2.28
MSH3P20585 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.8□□□□□ -2.28
MSH3P20585 RNU6-704P-201ENST00000364162 103 ntBASIC0.79□□□□□ -2.28
MSH3P20585 RNU6-1335P-201ENST00000365426 107 ntBASIC0.79□□□□□ -2.28
MSH3P20585 RNU6-949P-201ENST00000384040 107 ntBASIC0.79□□□□□ -2.28
MSH3P20585 SNORA32-201ENST00000384072 121 ntBASIC0.79□□□□□ -2.28
MSH3P20585 MIR520E-201ENST00000384867 87 ntBASIC0.79□□□□□ -2.28
MSH3P20585 U8.15-201ENST00000390947 134 ntBASIC0.79□□□□□ -2.28
MSH3P20585 AC022523.2-201ENST00000561045 150 ntBASIC0.79□□□□□ -2.28
MSH3P20585 MIR4804-201ENST00000581683 73 ntBASIC0.79□□□□□ -2.28
MSH3P20585 MIR4452-201ENST00000583004 71 ntBASIC0.79□□□□□ -2.28
MSH3P20585 MIR6866-201ENST00000638146 69 ntBASIC0.79□□□□□ -2.28
MSH3P20585 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.79□□□□□ -2.28
MSH3P20585 RNU6-235P-201ENST00000362644 107 ntBASIC0.78□□□□□ -2.28
MSH3P20585 Y_RNA.299-201ENST00000364973 94 ntBASIC0.78□□□□□ -2.28
MSH3P20585 MIR539-201ENST00000365690 78 ntBASIC0.78□□□□□ -2.28
MSH3P20585 MIR125B2-201ENST00000385128 89 ntBASIC0.78□□□□□ -2.28
MSH3P20585 MIR1257-201ENST00000408490 117 ntBASIC0.78□□□□□ -2.28
MSH3P20585 RNU4-69P-201ENST00000410677 143 ntBASIC0.78□□□□□ -2.28
MSH3P20585 RNA5SP247-201ENST00000411181 105 ntBASIC0.78□□□□□ -2.28
MSH3P20585 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.78□□□□□ -2.28
MSH3P20585 RNU6-977P-201ENST00000516411 103 ntBASIC0.78□□□□□ -2.28
MSH3P20585 AC025627.3-201ENST00000582078 182 ntBASIC0.78□□□□□ -2.28
MSH3P20585 MIR4653-201ENST00000585107 83 ntBASIC0.78□□□□□ -2.28
MSH3P20585 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.78□□□□□ -2.28
MSH3P20585 SNORD105-201ENST00000386910 85 ntBASIC0.77□□□□□ -2.29
MSH3P20585 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.77□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 219.1 ms