Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 RNU4-67P-201ENST00000364569 141 ntBASIC0.27□□□□□ -2.37
SDC3O75056 RNU6-643P-201ENST00000384018 107 ntBASIC0.27□□□□□ -2.37
SDC3O75056 RNU6-1011P-201ENST00000384668 107 ntBASIC0.27□□□□□ -2.37
SDC3O75056 Y_RNA.588-201ENST00000391254 102 ntBASIC0.27□□□□□ -2.37
SDC3O75056 MTCYBP9-201ENST00000431021 303 ntBASIC0.27□□□□□ -2.37
SDC3O75056 Y_RNA.797-201ENST00000515977 94 ntBASIC0.27□□□□□ -2.37
SDC3O75056 RNU2-4P-201ENST00000606190 192 ntBASIC0.27□□□□□ -2.37
SDC3O75056 SNORA25.18-201ENST00000607153 114 ntBASIC0.27□□□□□ -2.37
SDC3O75056 SNORD44.1-201ENST00000363202 61 ntBASIC0.26□□□□□ -2.37
SDC3O75056 SNORD118-201ENST00000363593 134 ntBASIC0.26□□□□□ -2.37
SDC3O75056 RNU6-949P-201ENST00000384040 107 ntBASIC0.26□□□□□ -2.37
SDC3O75056 SNORA8.2-201ENST00000384372 139 ntBASIC0.26□□□□□ -2.37
SDC3O75056 Y_RNA.515-201ENST00000384535 112 ntBASIC0.26□□□□□ -2.37
SDC3O75056 RNU6-493P-201ENST00000391321 108 ntBASIC0.26□□□□□ -2.37
SDC3O75056 Y_RNA.617-201ENST00000410920 90 ntBASIC0.26□□□□□ -2.37
SDC3O75056 AC096949.1-201ENST00000412047 152 ntBASIC0.26□□□□□ -2.37
SDC3O75056 AC108740.1-201ENST00000498629 225 ntBASIC0.26□□□□□ -2.37
SDC3O75056 Y_RNA.668-201ENST00000516233 93 ntBASIC0.26□□□□□ -2.37
SDC3O75056 RNU6-1149P-201ENST00000516810 97 ntBASIC0.26□□□□□ -2.37
SDC3O75056 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC0.26□□□□□ -2.37
SDC3O75056 AC023932.2-201ENST00000603176 175 ntBASIC0.26□□□□□ -2.37
SDC3O75056 MIR6082-201ENST00000613604 109 ntBASIC0.26□□□□□ -2.37
SDC3O75056 MIR103A1-201ENST00000362165 78 ntBASIC0.25□□□□□ -2.37
SDC3O75056 RNU4-16P-201ENST00000364737 141 ntBASIC0.25□□□□□ -2.37
SDC3O75056 Y_RNA.478-201ENST00000384358 107 ntBASIC0.25□□□□□ -2.37
SDC3O75056 Y_RNA.571-201ENST00000384753 98 ntBASIC0.25□□□□□ -2.37
SDC3O75056 RNU5E-9P-201ENST00000411164 104 ntBASIC0.25□□□□□ -2.37
SDC3O75056 Y_RNA.626-201ENST00000411288 95 ntBASIC0.25□□□□□ -2.37
SDC3O75056 MTND2P23-201ENST00000422990 651 ntBASIC0.25□□□□□ -2.37
SDC3O75056 RNU6-863P-201ENST00000515989 104 ntBASIC0.25□□□□□ -2.37
SDC3O75056 AC022523.2-201ENST00000561045 150 ntBASIC0.25□□□□□ -2.37
SDC3O75056 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.25□□□□□ -2.37
SDC3O75056 Y_RNA.13-201ENST00000362403 112 ntBASIC0.24□□□□□ -2.37
SDC3O75056 Y_RNA.133-201ENST00000363428 110 ntBASIC0.24□□□□□ -2.37
SDC3O75056 SNORA25.7-201ENST00000364375 127 ntBASIC0.24□□□□□ -2.37
SDC3O75056 RNU6-275P-201ENST00000364910 107 ntBASIC0.24□□□□□ -2.37
SDC3O75056 Y_RNA.539-201ENST00000384635 107 ntBASIC0.24□□□□□ -2.37
SDC3O75056 RNU6-1086P-201ENST00000410930 100 ntBASIC0.24□□□□□ -2.37
SDC3O75056 MRPS18CP4-201ENST00000535821 231 ntBASIC0.24□□□□□ -2.37
SDC3O75056 AC133485.4-201ENST00000561835 220 ntBASIC0.24□□□□□ -2.37
SDC3O75056 MIR4308-201ENST00000580634 81 ntBASIC0.24□□□□□ -2.37
SDC3O75056 MIR4491-201ENST00000581087 68 ntBASIC0.24□□□□□ -2.37
SDC3O75056 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.24□□□□□ -2.37
SDC3O75056 AC078938.1-201ENST00000620993 318 ntBASIC0.24□□□□□ -2.37
SDC3O75056 RNU6-403P-201ENST00000363163 104 ntBASIC0.23□□□□□ -2.37
SDC3O75056 RNA5SP62-201ENST00000363457 110 ntBASIC0.23□□□□□ -2.37
SDC3O75056 Y_RNA.174-201ENST00000363781 105 ntBASIC0.23□□□□□ -2.37
SDC3O75056 SNORA18-201ENST00000384416 132 ntBASIC0.23□□□□□ -2.37
SDC3O75056 Y_RNA.567-201ENST00000384736 106 ntBASIC0.23□□□□□ -2.37
SDC3O75056 RNA5SP63-201ENST00000391225 112 ntBASIC0.23□□□□□ -2.37
SDC3O75056 MIR1302-3-201ENST00000408128 138 ntBASIC0.23□□□□□ -2.37
SDC3O75056 SNRPGP12-201ENST00000449481 213 ntBASIC0.23□□□□□ -2.37
SDC3O75056 RNU6-135P-201ENST00000516769 101 ntBASIC0.23□□□□□ -2.37
SDC3O75056 Y_RNA.757-201ENST00000578934 114 ntBASIC0.23□□□□□ -2.37
SDC3O75056 AL360085.1-201ENST00000604713 532 ntBASIC0.23□□□□□ -2.37
SDC3O75056 MIR6718-201ENST00000616153 80 ntBASIC0.23□□□□□ -2.37
SDC3O75056 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.23□□□□□ -2.37
SDC3O75056 Y_RNA.75-201ENST00000362927 97 ntBASIC0.22□□□□□ -2.37
SDC3O75056 SNORA36.1-201ENST00000363424 132 ntBASIC0.22□□□□□ -2.37
SDC3O75056 Y_RNA.182-201ENST00000363880 111 ntBASIC0.22□□□□□ -2.37
SDC3O75056 SNORD27-201ENST00000363981 72 ntBASIC0.22□□□□□ -2.37
SDC3O75056 RNY1P13-201ENST00000365030 105 ntBASIC0.22□□□□□ -2.37
SDC3O75056 RNY1P6-201ENST00000384193 109 ntBASIC0.22□□□□□ -2.37
SDC3O75056 RNU4-70P-201ENST00000384579 139 ntBASIC0.22□□□□□ -2.37
SDC3O75056 MIR644A-201ENST00000385262 94 ntBASIC0.22□□□□□ -2.37
SDC3O75056 AL512326.2-201ENST00000426359 151 ntBASIC0.22□□□□□ -2.37
SDC3O75056 RNU6-469P-201ENST00000516253 101 ntBASIC0.22□□□□□ -2.37
SDC3O75056 RNU4-71P-201ENST00000516258 113 ntBASIC0.22□□□□□ -2.37
SDC3O75056 MIR5093-201ENST00000583199 100 ntBASIC0.22□□□□□ -2.37
SDC3O75056 Y_RNA.65-201ENST00000362846 100 ntBASIC0.21□□□□□ -2.38
SDC3O75056 RNU6-694P-201ENST00000364071 147 ntBASIC0.21□□□□□ -2.38
SDC3O75056 RNU6-923P-201ENST00000364753 107 ntBASIC0.21□□□□□ -2.38
SDC3O75056 Y_RNA.350-201ENST00000365409 98 ntBASIC0.21□□□□□ -2.38
SDC3O75056 SNORA72.6-201ENST00000384520 129 ntBASIC0.21□□□□□ -2.38
SDC3O75056 MIR568-201ENST00000385036 95 ntBASIC0.21□□□□□ -2.38
SDC3O75056 MTND5P32-201ENST00000560711 1802 ntBASIC0.2□□□□□ -2.38
SDC3O75056 RNU6-1336P-201ENST00000383886 109 ntBASIC0.2□□□□□ -2.38
SDC3O75056 Y_RNA.435-201ENST00000384095 112 ntBASIC0.2□□□□□ -2.38
SDC3O75056 Y_RNA.477-201ENST00000384352 108 ntBASIC0.2□□□□□ -2.38
SDC3O75056 RNU6-1258P-201ENST00000516911 111 ntBASIC0.2□□□□□ -2.38
SDC3O75056 RNU6-349P-201ENST00000362402 107 ntBASIC0.19□□□□□ -2.38
SDC3O75056 Y_RNA.32-201ENST00000362589 110 ntBASIC0.19□□□□□ -2.38
SDC3O75056 RNU6-1099P-201ENST00000363533 107 ntBASIC0.19□□□□□ -2.38
SDC3O75056 Y_RNA.412-201ENST00000384001 104 ntBASIC0.19□□□□□ -2.38
SDC3O75056 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.19□□□□□ -2.38
SDC3O75056 RNA5SP144-201ENST00000410846 116 ntBASIC0.19□□□□□ -2.38
SDC3O75056 RNU6-1194P-201ENST00000516208 104 ntBASIC0.19□□□□□ -2.38
SDC3O75056 RNU6-327P-201ENST00000516270 127 ntBASIC0.19□□□□□ -2.38
SDC3O75056 SNORA31.14-201ENST00000516728 116 ntBASIC0.19□□□□□ -2.38
SDC3O75056 RNU7-35P-201ENST00000517174 62 ntBASIC0.19□□□□□ -2.38
SDC3O75056 MIR4431-201ENST00000579990 94 ntBASIC0.19□□□□□ -2.38
SDC3O75056 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC0.19□□□□□ -2.38
SDC3O75056 AC062037.2-201ENST00000610137 73 ntBASIC0.19□□□□□ -2.38
SDC3O75056 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC0.19□□□□□ -2.38
SDC3O75056 MIR6828-201ENST00000636181 60 ntBASIC0.19□□□□□ -2.38
SDC3O75056 SNORD115-2-201ENST00000362842 82 ntBASIC0.18□□□□□ -2.38
SDC3O75056 SNORD115-20-201ENST00000365099 82 ntBASIC0.18□□□□□ -2.38
SDC3O75056 Y_RNA.536-201ENST00000384621 113 ntBASIC0.18□□□□□ -2.38
SDC3O75056 RNU2-59P-201ENST00000410482 191 ntBASIC0.18□□□□□ -2.38
SDC3O75056 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC0.18□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 218 ms