Protein–RNA interactions for Protein: A6NCS4

NKX2-6, Homeobox protein Nkx-2.6, humanhuman

Predictions only

Length 301 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-6A6NCS4 Y_RNA.521-201ENST00000384560 114 ntBASIC0.38□□□□□ -2.35
NKX2-6A6NCS4 RNU6-447P-201ENST00000410293 104 ntBASIC0.38□□□□□ -2.35
NKX2-6A6NCS4 RNU6-1118P-201ENST00000410382 104 ntBASIC0.38□□□□□ -2.35
NKX2-6A6NCS4 RNU6-1076P-201ENST00000410397 104 ntBASIC0.38□□□□□ -2.35
NKX2-6A6NCS4 RNA5SP237-201ENST00000410414 113 ntBASIC0.38□□□□□ -2.35
NKX2-6A6NCS4 RNU6-355P-201ENST00000410427 104 ntBASIC0.38□□□□□ -2.35
NKX2-6A6NCS4 RNU6-791P-201ENST00000410467 104 ntBASIC0.38□□□□□ -2.35
NKX2-6A6NCS4 RNU6-705P-201ENST00000410601 104 ntBASIC0.38□□□□□ -2.35
NKX2-6A6NCS4 RNU6-1100P-201ENST00000410691 104 ntBASIC0.38□□□□□ -2.35
NKX2-6A6NCS4 RNU6-860P-201ENST00000410860 104 ntBASIC0.38□□□□□ -2.35
NKX2-6A6NCS4 RNU6-1217P-201ENST00000411276 104 ntBASIC0.38□□□□□ -2.35
NKX2-6A6NCS4 RNU6-785P-201ENST00000411324 104 ntBASIC0.38□□□□□ -2.35
NKX2-6A6NCS4 RNU4-71P-201ENST00000516258 113 ntBASIC0.38□□□□□ -2.35
NKX2-6A6NCS4 MIR4514-201ENST00000581410 57 ntBASIC0.38□□□□□ -2.35
NKX2-6A6NCS4 U6.90-201ENST00000614007 104 ntBASIC0.38□□□□□ -2.35
NKX2-6A6NCS4 U6.70-201ENST00000620287 104 ntBASIC0.38□□□□□ -2.35
NKX2-6A6NCS4 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.38□□□□□ -2.35
NKX2-6A6NCS4 SNORA22.1-201ENST00000362701 134 ntBASIC0.37□□□□□ -2.35
NKX2-6A6NCS4 SNORD18A-201ENST00000363753 72 ntBASIC0.37□□□□□ -2.35
NKX2-6A6NCS4 Y_RNA.171-201ENST00000363760 102 ntBASIC0.37□□□□□ -2.35
NKX2-6A6NCS4 RNU6-1082P-201ENST00000364574 107 ntBASIC0.37□□□□□ -2.35
NKX2-6A6NCS4 Y_RNA.478-201ENST00000384358 107 ntBASIC0.37□□□□□ -2.35
NKX2-6A6NCS4 MIR140-201ENST00000385282 100 ntBASIC0.37□□□□□ -2.35
NKX2-6A6NCS4 U8.15-201ENST00000390947 134 ntBASIC0.37□□□□□ -2.35
NKX2-6A6NCS4 AC018659.1-201ENST00000551083 169 ntBASIC0.37□□□□□ -2.35
NKX2-6A6NCS4 MIR3152-201ENST00000579801 74 ntBASIC0.37□□□□□ -2.35
NKX2-6A6NCS4 AL662814.1-201ENST00000617364 121 ntBASIC0.37□□□□□ -2.35
NKX2-6A6NCS4 Y_RNA.83-201ENST00000363005 113 ntBASIC0.36□□□□□ -2.35
NKX2-6A6NCS4 RNU6-403P-201ENST00000363163 104 ntBASIC0.36□□□□□ -2.35
NKX2-6A6NCS4 Y_RNA.433-201ENST00000384089 102 ntBASIC0.36□□□□□ -2.35
NKX2-6A6NCS4 Y_RNA.452-201ENST00000384202 108 ntBASIC0.36□□□□□ -2.35
NKX2-6A6NCS4 SNORA18-201ENST00000384416 132 ntBASIC0.36□□□□□ -2.35
NKX2-6A6NCS4 SNORA20-201ENST00000384662 132 ntBASIC0.36□□□□□ -2.35
NKX2-6A6NCS4 RNU6-768P-201ENST00000384683 107 ntBASIC0.36□□□□□ -2.35
NKX2-6A6NCS4 MIR624-201ENST00000385217 97 ntBASIC0.36□□□□□ -2.35
NKX2-6A6NCS4 RNU4-83P-201ENST00000410863 133 ntBASIC0.36□□□□□ -2.35
NKX2-6A6NCS4 AC002350.1-201ENST00000490759 375 ntBASIC0.36□□□□□ -2.35
NKX2-6A6NCS4 RNU6-1219P-201ENST00000516143 112 ntBASIC0.36□□□□□ -2.35
NKX2-6A6NCS4 AC141846.1-201ENST00000568348 142 ntBASIC0.36□□□□□ -2.35
NKX2-6A6NCS4 AC130289.1-201ENST00000577321 73 ntBASIC0.36□□□□□ -2.35
NKX2-6A6NCS4 AC090897.1-201ENST00000580909 226 ntBASIC0.36□□□□□ -2.35
NKX2-6A6NCS4 SNORD92-201ENST00000585078 85 ntBASIC0.36□□□□□ -2.35
NKX2-6A6NCS4 MIR6841-201ENST00000637129 72 ntBASIC0.36□□□□□ -2.35
NKX2-6A6NCS4 MIR411-201ENST00000362239 96 ntBASIC0.35□□□□□ -2.35
NKX2-6A6NCS4 Y_RNA.13-201ENST00000362403 112 ntBASIC0.35□□□□□ -2.35
NKX2-6A6NCS4 Y_RNA.200-201ENST00000364018 102 ntBASIC0.35□□□□□ -2.35
NKX2-6A6NCS4 SNORA25.7-201ENST00000364375 127 ntBASIC0.35□□□□□ -2.35
NKX2-6A6NCS4 Y_RNA.430-201ENST00000384081 110 ntBASIC0.35□□□□□ -2.35
NKX2-6A6NCS4 RNU6-463P-201ENST00000384340 107 ntBASIC0.35□□□□□ -2.35
NKX2-6A6NCS4 MT-TF-201ENST00000387314 71 ntBASIC0.35□□□□□ -2.35
NKX2-6A6NCS4 RNA5SP261-201ENST00000410536 106 ntBASIC0.35□□□□□ -2.35
NKX2-6A6NCS4 RPL39P25-201ENST00000449384 154 ntBASIC0.35□□□□□ -2.35
NKX2-6A6NCS4 SNORA68.3-201ENST00000515906 83 ntBASIC0.35□□□□□ -2.35
NKX2-6A6NCS4 MIR4719-201ENST00000585233 84 ntBASIC0.35□□□□□ -2.35
NKX2-6A6NCS4 MIR2909-201ENST00000617113 69 ntBASIC0.35□□□□□ -2.35
NKX2-6A6NCS4 MIR8066-201ENST00000617280 78 ntBASIC0.35□□□□□ -2.35
NKX2-6A6NCS4 Y_RNA.52-201ENST00000362760 96 ntBASIC0.34□□□□□ -2.36
NKX2-6A6NCS4 Y_RNA.75-201ENST00000362927 97 ntBASIC0.34□□□□□ -2.36
NKX2-6A6NCS4 Y_RNA.144-201ENST00000363521 113 ntBASIC0.34□□□□□ -2.36
NKX2-6A6NCS4 RNY1P11-201ENST00000363759 113 ntBASIC0.34□□□□□ -2.36
NKX2-6A6NCS4 Y_RNA.274-201ENST00000364714 101 ntBASIC0.34□□□□□ -2.36
NKX2-6A6NCS4 SNORD100-201ENST00000408573 76 ntBASIC0.34□□□□□ -2.36
NKX2-6A6NCS4 AC096949.1-201ENST00000412047 152 ntBASIC0.34□□□□□ -2.36
NKX2-6A6NCS4 RN7SKP12-201ENST00000516275 143 ntBASIC0.34□□□□□ -2.36
NKX2-6A6NCS4 Y_RNA.757-201ENST00000578934 114 ntBASIC0.34□□□□□ -2.36
NKX2-6A6NCS4 RNU6-508P-201ENST00000363231 103 ntBASIC0.33□□□□□ -2.36
NKX2-6A6NCS4 RNA5SP517-201ENST00000364724 117 ntBASIC0.33□□□□□ -2.36
NKX2-6A6NCS4 Y_RNA.470-201ENST00000384307 117 ntBASIC0.33□□□□□ -2.36
NKX2-6A6NCS4 MIR644A-201ENST00000385262 94 ntBASIC0.33□□□□□ -2.36
NKX2-6A6NCS4 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.33□□□□□ -2.36
NKX2-6A6NCS4 SNORA62.5-201ENST00000516634 120 ntBASIC0.33□□□□□ -2.36
NKX2-6A6NCS4 RNU6-448P-201ENST00000517052 107 ntBASIC0.33□□□□□ -2.36
NKX2-6A6NCS4 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.33□□□□□ -2.36
NKX2-6A6NCS4 MIR3678-201ENST00000578455 94 ntBASIC0.33□□□□□ -2.36
NKX2-6A6NCS4 MIR4431-201ENST00000579990 94 ntBASIC0.33□□□□□ -2.36
NKX2-6A6NCS4 MIR4491-201ENST00000581087 68 ntBASIC0.33□□□□□ -2.36
NKX2-6A6NCS4 Z83818.1-201ENST00000603584 150 ntBASIC0.33□□□□□ -2.36
NKX2-6A6NCS4 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.33□□□□□ -2.36
NKX2-6A6NCS4 Y_RNA.42-201ENST00000362660 108 ntBASIC0.32□□□□□ -2.36
NKX2-6A6NCS4 RNA5SP62-201ENST00000363457 110 ntBASIC0.32□□□□□ -2.36
NKX2-6A6NCS4 RNU6-1020P-201ENST00000363684 107 ntBASIC0.32□□□□□ -2.36
NKX2-6A6NCS4 RNY1P13-201ENST00000365030 105 ntBASIC0.32□□□□□ -2.36
NKX2-6A6NCS4 RNA5SP117-201ENST00000365294 118 ntBASIC0.32□□□□□ -2.36
NKX2-6A6NCS4 SNORA50A-201ENST00000384225 134 ntBASIC0.32□□□□□ -2.36
NKX2-6A6NCS4 SNORA72.6-201ENST00000384520 129 ntBASIC0.32□□□□□ -2.36
NKX2-6A6NCS4 Y_RNA.588-201ENST00000391254 102 ntBASIC0.32□□□□□ -2.36
NKX2-6A6NCS4 RNU6-588P-201ENST00000410281 105 ntBASIC0.32□□□□□ -2.36
NKX2-6A6NCS4 SNORA25.16-201ENST00000516741 121 ntBASIC0.32□□□□□ -2.36
NKX2-6A6NCS4 AC133485.4-201ENST00000561835 220 ntBASIC0.32□□□□□ -2.36
NKX2-6A6NCS4 AC009779.6-201ENST00000603972 165 ntBASIC0.32□□□□□ -2.36
NKX2-6A6NCS4 AC092634.7-201ENST00000621022 103 ntBASIC0.32□□□□□ -2.36
NKX2-6A6NCS4 RNU6-349P-201ENST00000362402 107 ntBASIC0.31□□□□□ -2.36
NKX2-6A6NCS4 RNU4-45P-201ENST00000365469 141 ntBASIC0.31□□□□□ -2.36
NKX2-6A6NCS4 SNORA32-201ENST00000384072 121 ntBASIC0.31□□□□□ -2.36
NKX2-6A6NCS4 RNY1P6-201ENST00000384193 109 ntBASIC0.31□□□□□ -2.36
NKX2-6A6NCS4 AL078595.1-201ENST00000404458 226 ntBASIC0.31□□□□□ -2.36
NKX2-6A6NCS4 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.31□□□□□ -2.36
NKX2-6A6NCS4 AL512326.2-201ENST00000426359 151 ntBASIC0.31□□□□□ -2.36
NKX2-6A6NCS4 SNORA25.12-201ENST00000516202 82 ntBASIC0.31□□□□□ -2.36
NKX2-6A6NCS4 RNA5SP395-201ENST00000516567 118 ntBASIC0.31□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 13.8 ms