Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.96□□□□□ -1.94
PCDHB3Q9Y5E6 RNU6-1241P-201ENST00000384536 107 ntBASIC2.96□□□□□ -1.94
PCDHB3Q9Y5E6 RNU6-243P-201ENST00000391140 107 ntBASIC2.96□□□□□ -1.94
PCDHB3Q9Y5E6 SNORD92-201ENST00000585078 85 ntBASIC2.96□□□□□ -1.94
PCDHB3Q9Y5E6 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
PCDHB3Q9Y5E6 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
PCDHB3Q9Y5E6 RNU6-987P-201ENST00000384759 104 ntBASIC2.95□□□□□ -1.94
PCDHB3Q9Y5E6 MIR518A2-201ENST00000384966 87 ntBASIC2.95□□□□□ -1.94
PCDHB3Q9Y5E6 RNA5SP501-201ENST00000410990 112 ntBASIC2.95□□□□□ -1.94
PCDHB3Q9Y5E6 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC2.95□□□□□ -1.94
PCDHB3Q9Y5E6 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC2.95□□□□□ -1.94
PCDHB3Q9Y5E6 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.95□□□□□ -1.94
PCDHB3Q9Y5E6 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
PCDHB3Q9Y5E6 MIRLET7F1-201ENST00000362202 87 ntBASIC2.94□□□□□ -1.94
PCDHB3Q9Y5E6 Y_RNA.12-201ENST00000362393 112 ntBASIC2.94□□□□□ -1.94
PCDHB3Q9Y5E6 RNU6-471P-201ENST00000383944 106 ntBASIC2.94□□□□□ -1.94
PCDHB3Q9Y5E6 MIR588-201ENST00000384900 83 ntBASIC2.94□□□□□ -1.94
PCDHB3Q9Y5E6 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC2.94□□□□□ -1.94
PCDHB3Q9Y5E6 SNORD90-201ENST00000391145 111 ntBASIC2.94□□□□□ -1.94
PCDHB3Q9Y5E6 RNA5SP274-201ENST00000410484 108 ntBASIC2.94□□□□□ -1.94
PCDHB3Q9Y5E6 AP004217.1-201ENST00000480579 346 ntBASIC2.94□□□□□ -1.94
PCDHB3Q9Y5E6 NEAT1_2.1-201ENST00000620525 105 ntBASIC2.94□□□□□ -1.94
PCDHB3Q9Y5E6 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
PCDHB3Q9Y5E6 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC2.93□□□□□ -1.94
PCDHB3Q9Y5E6 SNORA54-201ENST00000384281 123 ntBASIC2.93□□□□□ -1.94
PCDHB3Q9Y5E6 MIR563-201ENST00000385080 79 ntBASIC2.93□□□□□ -1.94
PCDHB3Q9Y5E6 MIR154-201ENST00000385243 84 ntBASIC2.93□□□□□ -1.94
PCDHB3Q9Y5E6 RNU6-466P-201ENST00000391224 103 ntBASIC2.93□□□□□ -1.94
PCDHB3Q9Y5E6 AC105272.1-201ENST00000438604 198 ntBASIC2.93□□□□□ -1.94
PCDHB3Q9Y5E6 RN7SL20P-201ENST00000488827 297 ntBASIC2.93□□□□□ -1.94
PCDHB3Q9Y5E6 AC121758.2-201ENST00000553271 193 ntBASIC2.93□□□□□ -1.94
PCDHB3Q9Y5E6 SNORA4-201ENST00000584302 138 ntBASIC2.93□□□□□ -1.94
PCDHB3Q9Y5E6 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
PCDHB3Q9Y5E6 MIR22-201ENST00000362190 85 ntBASIC2.92□□□□□ -1.94
PCDHB3Q9Y5E6 SNORD115-31-201ENST00000365318 82 ntBASIC2.92□□□□□ -1.94
PCDHB3Q9Y5E6 RNU1-138P-201ENST00000384093 164 ntBASIC2.92□□□□□ -1.94
PCDHB3Q9Y5E6 RNU6-663P-201ENST00000391105 106 ntBASIC2.92□□□□□ -1.94
PCDHB3Q9Y5E6 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
PCDHB3Q9Y5E6 EEF1A1P41-201ENST00000414667 207 ntBASIC2.92□□□□□ -1.94
PCDHB3Q9Y5E6 RN7SL633P-201ENST00000488974 297 ntBASIC2.92□□□□□ -1.94
PCDHB3Q9Y5E6 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.92□□□□□ -1.94
PCDHB3Q9Y5E6 YWHAEP2-201ENST00000580066 112 ntBASIC2.92□□□□□ -1.94
PCDHB3Q9Y5E6 YWHAEP3-201ENST00000582767 121 ntBASIC2.92□□□□□ -1.94
PCDHB3Q9Y5E6 AL096861.1-201ENST00000610899 123 ntBASIC2.92□□□□□ -1.94
PCDHB3Q9Y5E6 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC2.92□□□□□ -1.94
PCDHB3Q9Y5E6 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
PCDHB3Q9Y5E6 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
PCDHB3Q9Y5E6 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC2.91□□□□□ -1.94
PCDHB3Q9Y5E6 MTND4LP19-201ENST00000403051 166 ntBASIC2.91□□□□□ -1.94
PCDHB3Q9Y5E6 RNU4-37P-201ENST00000410214 84 ntBASIC2.91□□□□□ -1.94
PCDHB3Q9Y5E6 AC245517.4-201ENST00000448601 281 ntBASIC2.91□□□□□ -1.94
PCDHB3Q9Y5E6 AC107016.2-201ENST00000547968 190 ntBASIC2.91□□□□□ -1.94
PCDHB3Q9Y5E6 AC006023.1-201ENST00000603944 259 ntBASIC2.91□□□□□ -1.94
PCDHB3Q9Y5E6 PRELID3BP2-201ENST00000605362 201 ntBASIC2.91□□□□□ -1.94
PCDHB3Q9Y5E6 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC2.91□□□□□ -1.94
PCDHB3Q9Y5E6 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.91□□□□□ -1.94
PCDHB3Q9Y5E6 RNU6-1123P-201ENST00000362347 106 ntBASIC2.9□□□□□ -1.95
PCDHB3Q9Y5E6 MIR518E-201ENST00000385252 88 ntBASIC2.9□□□□□ -1.95
PCDHB3Q9Y5E6 SNORD67-201ENST00000390833 111 ntBASIC2.9□□□□□ -1.95
PCDHB3Q9Y5E6 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.9□□□□□ -1.95
PCDHB3Q9Y5E6 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC2.89□□□□□ -1.95
PCDHB3Q9Y5E6 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.89□□□□□ -1.95
PCDHB3Q9Y5E6 SNORA8.1-201ENST00000384250 140 ntBASIC2.89□□□□□ -1.95
PCDHB3Q9Y5E6 RNU7-106P-201ENST00000459514 67 ntBASIC2.89□□□□□ -1.95
PCDHB3Q9Y5E6 RNU7-156P-201ENST00000517214 74 ntBASIC2.89□□□□□ -1.95
PCDHB3Q9Y5E6 MIR6740-201ENST00000618268 113 ntBASIC2.89□□□□□ -1.95
PCDHB3Q9Y5E6 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC2.89□□□□□ -1.95
PCDHB3Q9Y5E6 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC2.89□□□□□ -1.95
PCDHB3Q9Y5E6 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.89□□□□□ -1.95
PCDHB3Q9Y5E6 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
PCDHB3Q9Y5E6 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
PCDHB3Q9Y5E6 AC108206.1-201ENST00000570186 4159 ntBASIC2.88□□□□□ -1.95
PCDHB3Q9Y5E6 MIR30D-201ENST00000362283 70 ntBASIC2.88□□□□□ -1.95
PCDHB3Q9Y5E6 Y_RNA.36-201ENST00000362602 112 ntBASIC2.88□□□□□ -1.95
PCDHB3Q9Y5E6 RNU6-957P-201ENST00000363652 99 ntBASIC2.88□□□□□ -1.95
PCDHB3Q9Y5E6 RNA5SP48-201ENST00000363969 126 ntBASIC2.88□□□□□ -1.95
PCDHB3Q9Y5E6 MIR653-201ENST00000385279 96 ntBASIC2.88□□□□□ -1.95
PCDHB3Q9Y5E6 RN7SL499P-201ENST00000481141 276 ntBASIC2.88□□□□□ -1.95
PCDHB3Q9Y5E6 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC2.88□□□□□ -1.95
PCDHB3Q9Y5E6 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC2.88□□□□□ -1.95
PCDHB3Q9Y5E6 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
PCDHB3Q9Y5E6 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.87□□□□□ -1.95
PCDHB3Q9Y5E6 RNU6-851P-201ENST00000384565 107 ntBASIC2.87□□□□□ -1.95
PCDHB3Q9Y5E6 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
PCDHB3Q9Y5E6 snoU13.17-201ENST00000458802 104 ntBASIC2.87□□□□□ -1.95
PCDHB3Q9Y5E6 RNU6-322P-201ENST00000516010 103 ntBASIC2.87□□□□□ -1.95
PCDHB3Q9Y5E6 SNORA31.15-201ENST00000516771 132 ntBASIC2.87□□□□□ -1.95
PCDHB3Q9Y5E6 AL161431.1-201ENST00000618966 4205 ntBASIC2.87□□□□□ -1.95
PCDHB3Q9Y5E6 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC2.87□□□□□ -1.95
PCDHB3Q9Y5E6 AC073325.2-201ENST00000339545 159 ntBASIC2.86□□□□□ -1.95
PCDHB3Q9Y5E6 RNU6-330P-201ENST00000363015 107 ntBASIC2.86□□□□□ -1.95
PCDHB3Q9Y5E6 MIR942-201ENST00000401111 86 ntBASIC2.86□□□□□ -1.95
PCDHB3Q9Y5E6 RPS29P6-201ENST00000438196 145 ntBASIC2.86□□□□□ -1.95
PCDHB3Q9Y5E6 SNORD111.1-201ENST00000516421 86 ntBASIC2.86□□□□□ -1.95
PCDHB3Q9Y5E6 GTF3AP2-201ENST00000557014 266 ntBASIC2.86□□□□□ -1.95
PCDHB3Q9Y5E6 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
PCDHB3Q9Y5E6 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.86□□□□□ -1.95
PCDHB3Q9Y5E6 AP006437.1-201ENST00000641440 3685 ntBASIC2.86□□□□□ -1.95
PCDHB3Q9Y5E6 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
PCDHB3Q9Y5E6 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.85□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 193.3 ms