Protein–RNA interactions for Protein: Q9N2J8

HERV-H_2q24.1 provirus ancestral Env polyprotein, humanhuman

Predictions only

Length 555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Q9N2J8 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.1□□□□□ -2.23
Q9N2J8 RNU1-124P-201ENST00000363861 145 ntBASIC1.09□□□□□ -2.23
Q9N2J8 RNU6-647P-201ENST00000364243 107 ntBASIC1.09□□□□□ -2.23
Q9N2J8 SNORD12C-201ENST00000386307 89 ntBASIC1.09□□□□□ -2.23
Q9N2J8 RNU6-257P-201ENST00000410238 98 ntBASIC1.09□□□□□ -2.23
Q9N2J8 snoU13.2-201ENST00000459201 104 ntBASIC1.09□□□□□ -2.23
Q9N2J8 MIR4781-201ENST00000585250 76 ntBASIC1.09□□□□□ -2.23
Q9N2J8 AL137067.1-201ENST00000615933 120 ntBASIC1.09□□□□□ -2.23
Q9N2J8 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC1.09□□□□□ -2.23
Q9N2J8 RNA5SP432-201ENST00000362480 116 ntBASIC1.08□□□□□ -2.24
Q9N2J8 Y_RNA.114-201ENST00000363265 113 ntBASIC1.08□□□□□ -2.24
Q9N2J8 Y_RNA.366-201ENST00000365540 102 ntBASIC1.08□□□□□ -2.24
Q9N2J8 MIR588-201ENST00000384900 83 ntBASIC1.08□□□□□ -2.24
Q9N2J8 RNU7-164P-201ENST00000459221 62 ntBASIC1.08□□□□□ -2.24
Q9N2J8 RNU7-113P-201ENST00000459273 62 ntBASIC1.08□□□□□ -2.24
Q9N2J8 snoU13.31-201ENST00000607291 104 ntBASIC1.08□□□□□ -2.24
Q9N2J8 AC012676.2-201ENST00000619258 186 ntBASIC1.08□□□□□ -2.24
Q9N2J8 MIR200A-201ENST00000384875 90 ntBASIC1.07□□□□□ -2.24
Q9N2J8 RNU6-994P-201ENST00000410507 111 ntBASIC1.07□□□□□ -2.24
Q9N2J8 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC1.07□□□□□ -2.24
Q9N2J8 AC113410.1-201ENST00000505029 247 ntBASIC1.07□□□□□ -2.24
Q9N2J8 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.07□□□□□ -2.24
Q9N2J8 AC108081.1-201ENST00000604358 221 ntBASIC1.07□□□□□ -2.24
Q9N2J8 MIR6740-201ENST00000618268 113 ntBASIC1.07□□□□□ -2.24
Q9N2J8 Y_RNA.171-201ENST00000363760 102 ntBASIC1.06□□□□□ -2.24
Q9N2J8 RNU6-704P-201ENST00000364162 103 ntBASIC1.06□□□□□ -2.24
Q9N2J8 MIR539-201ENST00000365690 78 ntBASIC1.06□□□□□ -2.24
Q9N2J8 RNU6-187P-201ENST00000384139 106 ntBASIC1.06□□□□□ -2.24
Q9N2J8 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.06□□□□□ -2.24
Q9N2J8 AL603908.1-201ENST00000406098 201 ntBASIC1.06□□□□□ -2.24
Q9N2J8 RNA5SP237-201ENST00000410414 113 ntBASIC1.06□□□□□ -2.24
Q9N2J8 SUMO1P3-201ENST00000439961 304 ntBASIC1.06□□□□□ -2.24
Q9N2J8 AC067940.1-201ENST00000458411 300 ntBASIC1.06□□□□□ -2.24
Q9N2J8 RPS23P4-201ENST00000487908 423 ntBASIC1.06□□□□□ -2.24
Q9N2J8 RNU6-94P-201ENST00000607728 107 ntBASIC1.06□□□□□ -2.24
Q9N2J8 Y_RNA.280-201ENST00000364765 112 ntBASIC1.05□□□□□ -2.24
Q9N2J8 Y_RNA.294-201ENST00000364916 102 ntBASIC1.05□□□□□ -2.24
Q9N2J8 Y_RNA.298-201ENST00000364960 107 ntBASIC1.05□□□□□ -2.24
Q9N2J8 MIR563-201ENST00000385080 79 ntBASIC1.05□□□□□ -2.24
Q9N2J8 Y_RNA.586-201ENST00000391146 98 ntBASIC1.05□□□□□ -2.24
Q9N2J8 RNU6-1165P-201ENST00000410119 107 ntBASIC1.05□□□□□ -2.24
Q9N2J8 AL158147.1-201ENST00000443970 75 ntBASIC1.05□□□□□ -2.24
Q9N2J8 RNU7-123P-201ENST00000515911 60 ntBASIC1.05□□□□□ -2.24
Q9N2J8 RNU2-35P-201ENST00000516446 142 ntBASIC1.05□□□□□ -2.24
Q9N2J8 RNU6-1258P-201ENST00000516911 111 ntBASIC1.05□□□□□ -2.24
Q9N2J8 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.04□□□□□ -2.24
Q9N2J8 SNORD115-2-201ENST00000362842 82 ntBASIC1.04□□□□□ -2.24
Q9N2J8 SNORD115-20-201ENST00000365099 82 ntBASIC1.04□□□□□ -2.24
Q9N2J8 Y_RNA.531-201ENST00000384589 121 ntBASIC1.04□□□□□ -2.24
Q9N2J8 MT-TF-201ENST00000387314 71 ntBASIC1.04□□□□□ -2.24
Q9N2J8 MIR1285-1-201ENST00000408593 84 ntBASIC1.04□□□□□ -2.24
Q9N2J8 FABP5P4-201ENST00000437203 171 ntBASIC1.04□□□□□ -2.24
Q9N2J8 MIR18B-201ENST00000454574 71 ntBASIC1.04□□□□□ -2.24
Q9N2J8 RNA5SP33-201ENST00000516687 98 ntBASIC1.04□□□□□ -2.24
Q9N2J8 IGHVII-40-1-201ENST00000517316 58 ntBASIC1.04□□□□□ -2.24
Q9N2J8 AC004812.1-201ENST00000540773 146 ntBASIC1.04□□□□□ -2.24
Q9N2J8 SNORD114-24-201ENST00000365029 72 ntBASIC1.03□□□□□ -2.24
Q9N2J8 Y_RNA.327-201ENST00000365201 102 ntBASIC1.03□□□□□ -2.24
Q9N2J8 SNORA18-201ENST00000384416 132 ntBASIC1.03□□□□□ -2.24
Q9N2J8 RNU6-1237P-201ENST00000384777 107 ntBASIC1.03□□□□□ -2.24
Q9N2J8 AL512326.2-201ENST00000426359 151 ntBASIC1.03□□□□□ -2.24
Q9N2J8 RPS29P28-201ENST00000446439 141 ntBASIC1.03□□□□□ -2.24
Q9N2J8 SNORD124-201ENST00000459577 104 ntBASIC1.03□□□□□ -2.24
Q9N2J8 RN7SKP19-201ENST00000516016 252 ntBASIC1.03□□□□□ -2.24
Q9N2J8 RNY4P20-201ENST00000516678 93 ntBASIC1.03□□□□□ -2.24
Q9N2J8 AL662814.1-201ENST00000617364 121 ntBASIC1.03□□□□□ -2.24
Q9N2J8 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.02□□□□□ -2.25
Q9N2J8 RNU6-934P-201ENST00000365154 107 ntBASIC1.02□□□□□ -2.25
Q9N2J8 Y_RNA.470-201ENST00000384307 117 ntBASIC1.02□□□□□ -2.25
Q9N2J8 MIR942-201ENST00000401111 86 ntBASIC1.02□□□□□ -2.25
Q9N2J8 RNU6-1211P-201ENST00000459179 105 ntBASIC1.02□□□□□ -2.25
Q9N2J8 MIR4295-201ENST00000585286 85 ntBASIC1.02□□□□□ -2.25
Q9N2J8 Y_RNA.299-201ENST00000364973 94 ntBASIC1.01□□□□□ -2.25
Q9N2J8 RNU6-342P-201ENST00000384521 104 ntBASIC1.01□□□□□ -2.25
Q9N2J8 RNU6ATAC6P-201ENST00000408132 126 ntBASIC1.01□□□□□ -2.25
Q9N2J8 RNU6ATAC33P-201ENST00000408647 126 ntBASIC1.01□□□□□ -2.25
Q9N2J8 RNU6-1086P-201ENST00000410930 100 ntBASIC1.01□□□□□ -2.25
Q9N2J8 RPL39P25-201ENST00000449384 154 ntBASIC1.01□□□□□ -2.25
Q9N2J8 AC108729.3-201ENST00000513484 108 ntBASIC1.01□□□□□ -2.25
Q9N2J8 MIR30D-201ENST00000362283 70 ntBASIC1□□□□□ -2.25
Q9N2J8 RNA5SP136-201ENST00000410906 107 ntBASIC1□□□□□ -2.25
Q9N2J8 Y_RNA.617-201ENST00000410920 90 ntBASIC1□□□□□ -2.25
Q9N2J8 SNORD83.1-201ENST00000411362 77 ntBASIC1□□□□□ -2.25
Q9N2J8 TMSB4XP3-201ENST00000445144 114 ntBASIC1□□□□□ -2.25
Q9N2J8 snoU13.21-201ENST00000459368 105 ntBASIC1□□□□□ -2.25
Q9N2J8 AC087343.1-201ENST00000477341 475 ntBASIC1□□□□□ -2.25
Q9N2J8 RNU6-971P-201ENST00000516920 106 ntBASIC1□□□□□ -2.25
Q9N2J8 IGKV1-22-201ENST00000524313 326 ntBASIC1□□□□□ -2.25
Q9N2J8 AC141846.1-201ENST00000568348 142 ntBASIC1□□□□□ -2.25
Q9N2J8 MIR4498-201ENST00000577599 66 ntBASIC1□□□□□ -2.25
Q9N2J8 SNORA4-201ENST00000584302 138 ntBASIC1□□□□□ -2.25
Q9N2J8 AL359821.1-201ENST00000605519 182 ntBASIC1□□□□□ -2.25
Q9N2J8 AL136317.1-201ENST00000612653 226 ntBASIC1□□□□□ -2.25
Q9N2J8 uc_338.6-201ENST00000613544 171 ntBASIC1□□□□□ -2.25
Q9N2J8 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC0.99□□□□□ -2.25
Q9N2J8 MIR1-1-201ENST00000362147 71 ntBASIC0.99□□□□□ -2.25
Q9N2J8 RNU6-235P-201ENST00000362644 107 ntBASIC0.99□□□□□ -2.25
Q9N2J8 RPS26P5-201ENST00000418544 335 ntBASIC0.99□□□□□ -2.25
Q9N2J8 MIR4771-2-201ENST00000577758 74 ntBASIC0.99□□□□□ -2.25
Q9N2J8 MIR4771-1-201ENST00000582617 74 ntBASIC0.99□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 179.7 ms